Strain Fitness in Shewanella amazonensis SB2B around Sama_1893

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,307,735	+		Sama_1891	0.69	+2.4
2,307,735	+		Sama_1891	0.69	+0.8
2,307,757	-		Sama_1891	0.71	-0.4
2,307,757	-		Sama_1891	0.71	+0.5
2,307,757	-		Sama_1891	0.71	+0.2
2,307,760	+		Sama_1891	0.71	-1.0
2,307,835	-		Sama_1891	0.77	+1.0
2,307,846	+		Sama_1891	0.78	+0.7
2,307,849	-		Sama_1891	0.78	+0.7
2,307,885	-		Sama_1891	0.81	-0.1
2,307,885	-		Sama_1891	0.81	-0.1
2,307,949	-		Sama_1891	0.86	-1.9
2,307,984	+		Sama_1891	0.88	-2.6
2,307,984	+		Sama_1891	0.88	-0.6
2,308,014	+				-0.3
2,308,014	+				+0.2
2,308,015	-				+0.3
2,308,022	+				-0.4
2,308,023	-				-1.0
2,308,023	-				-0.3
2,308,033	-				-0.4
2,308,057	+				-0.7
2,308,057	+				-0.3
2,308,057	+				-1.0
2,308,057	+				+1.5
2,308,058	-				-1.3
2,308,058	-				+0.5
2,308,058	-				-1.3
2,308,058	-				-0.3
2,308,058	-				-0.3
2,308,058	-				-0.7
2,308,058	-				+0.6
2,308,058	-				+0.3
2,308,058	-				+0.7
2,308,065	+				+0.1
2,308,066	-				-0.7
2,308,066	-				+0.1
2,308,135	+				+0.2
2,308,162	+		Sama_1892	0.11	-0.5
2,308,162	+		Sama_1892	0.11	-0.2
2,308,214	-		Sama_1892	0.20	-0.4
2,308,226	+		Sama_1892	0.22	+0.5
2,308,231	+		Sama_1892	0.22	+0.0
2,308,231	+		Sama_1892	0.22	+1.6
2,308,232	-		Sama_1892	0.23	-0.7
2,308,257	-		Sama_1892	0.27	-1.3
2,308,266	+		Sama_1892	0.28	+0.6
2,308,266	+		Sama_1892	0.28	+0.7
2,308,266	+		Sama_1892	0.28	-0.5
2,308,266	+		Sama_1892	0.28	+0.5
2,308,266	+		Sama_1892	0.28	-0.7
2,308,267	-		Sama_1892	0.28	-1.2
2,308,304	-		Sama_1892	0.34	-0.3
2,308,304	-		Sama_1892	0.34	-1.5
2,308,313	-		Sama_1892	0.36	-0.4
2,308,371	-		Sama_1892	0.45	+0.3
2,308,417	+		Sama_1892	0.52	-0.3
2,308,418	-		Sama_1892	0.52	-0.4
2,308,442	-		Sama_1892	0.56	+0.9
2,308,458	-		Sama_1892	0.59	+0.3
2,308,458	-		Sama_1892	0.59	-1.5
2,308,458	-		Sama_1892	0.59	-1.5
2,308,462	-		Sama_1892	0.59	+0.1
2,308,462	-		Sama_1892	0.59	-0.3
2,308,514	-		Sama_1892	0.68	-1.7
2,308,723	+				-0.0
2,308,747	+				-0.9
2,308,748	-				-0.4
2,308,748	-				-1.3
2,308,758	+				-1.1
2,308,758	+				-0.9
2,308,827	+		Sama_1893	0.11	-0.9
2,308,828	-		Sama_1893	0.11	+0.3
2,308,878	+		Sama_1893	0.16	-1.4
2,308,878	+		Sama_1893	0.16	-0.0
2,308,879	-		Sama_1893	0.16	+0.2
2,308,879	-		Sama_1893	0.16	+0.2
2,308,889	-		Sama_1893	0.17	-0.3
2,308,889	-		Sama_1893	0.17	-0.2
2,308,911	+		Sama_1893	0.19	+0.4
2,308,911	+		Sama_1893	0.19	-1.0
2,308,912	-		Sama_1893	0.20	+0.3
2,308,912	-		Sama_1893	0.20	+1.1
2,308,928	+		Sama_1893	0.21	-0.8
2,308,928	+		Sama_1893	0.21	+0.2
2,308,929	-		Sama_1893	0.21	+0.8
2,308,929	-		Sama_1893	0.21	-1.5
2,308,970	+		Sama_1893	0.25	+1.1
2,308,970	+		Sama_1893	0.25	-0.3
2,308,998	+		Sama_1893	0.28	-0.3
2,308,999	-		Sama_1893	0.28	-1.4
2,309,070	+		Sama_1893	0.35	-0.2
2,309,071	-		Sama_1893	0.35	+0.4
2,309,110	+		Sama_1893	0.39	+0.5
2,309,111	-		Sama_1893	0.39	-0.2
2,309,111	-		Sama_1893	0.39	-2.8
2,309,111	-		Sama_1893	0.39	-0.2
2,309,137	+		Sama_1893	0.42	-1.1
2,309,137	+		Sama_1893	0.42	+0.3
2,309,138	-		Sama_1893	0.42	-0.3
2,309,138	-		Sama_1893	0.42	+1.0
2,309,138	-		Sama_1893	0.42	+0.5
2,309,138	-		Sama_1893	0.42	-0.6
2,309,138	-		Sama_1893	0.42	+1.0
2,309,138	-		Sama_1893	0.42	-0.3
2,309,138	-		Sama_1893	0.42	-0.5
2,309,138	-		Sama_1893	0.42	-0.6
2,309,138	-		Sama_1893	0.42	-0.3
2,309,138	-		Sama_1893	0.42	+0.1
2,309,211	+		Sama_1893	0.49	+1.5
2,309,297	-		Sama_1893	0.58	+0.3
2,309,297	-		Sama_1893	0.58	-0.5
2,309,300	+		Sama_1893	0.58	+0.7
2,309,300	+		Sama_1893	0.58	+0.1
2,309,301	-		Sama_1893	0.58	+0.6
2,309,301	-		Sama_1893	0.58	-0.2
2,309,301	-		Sama_1893	0.58	+0.7
2,309,301	-		Sama_1893	0.58	-0.6
2,309,301	-		Sama_1893	0.58	-1.3
2,309,338	+		Sama_1893	0.62	-1.0
2,309,338	+		Sama_1893	0.62	+0.3
2,309,339	-		Sama_1893	0.62	+2.5
2,309,358	-		Sama_1893	0.64	+0.7
2,309,361	+		Sama_1893	0.64	+0.6
2,309,361	+		Sama_1893	0.64	+0.7
2,309,361	+		Sama_1893	0.64	+0.2
2,309,362	-		Sama_1893	0.64	+1.6
2,309,466	+		Sama_1893	0.75	-0.4
2,309,466	+		Sama_1893	0.75	-0.3
2,309,466	+		Sama_1893	0.75	+0.3
2,309,467	-		Sama_1893	0.75	+1.0
2,309,467	-		Sama_1893	0.75	+0.4
2,309,583	+		Sama_1893	0.86	-0.3
2,309,583	+		Sama_1893	0.86	-0.3
2,309,583	+		Sama_1893	0.86	-0.8
2,309,583	+		Sama_1893	0.86	+0.8
2,309,584	-		Sama_1893	0.86	-0.9
2,309,585	+		Sama_1893	0.86	-0.0
2,309,586	-		Sama_1893	0.87	+0.5
2,309,644	-				-0.8
2,309,644	-				+0.6
2,309,737	+				+0.1
2,309,738	-				+0.1
2,309,738	-				-1.7
2,309,738	-				-0.3
2,309,747	+				+0.1
2,309,769	-				+0.0
2,309,783	+				-0.8
2,309,784	-				-0.1
2,309,784	-				-1.7
2,309,804	-				-0.7
2,309,806	+				+0.2
2,309,834	+				-1.0
2,309,844	-				+1.1
2,309,907	-				-1.9
2,309,907	-				-0.7
2,310,171	+		Sama_1894	0.17	+0.3
2,310,236	+		Sama_1894	0.21	-0.7
2,310,237	-		Sama_1894	0.21	+1.3
2,310,429	-		Sama_1894	0.33	-0.3
2,310,429	-		Sama_1894	0.33	+0.6