Strain Fitness in Shewanella amazonensis SB2B around Sama_1854

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
2,257,968	+		Sama_1853	0.46	-0.9
2,258,195	+		Sama_1853	0.59	+0.6
2,258,196	-		Sama_1853	0.59	-0.4
2,258,196	-		Sama_1853	0.59	+0.1
2,258,196	-		Sama_1853	0.59	+1.3
2,258,202	-		Sama_1853	0.59	-1.7
2,258,309	+		Sama_1853	0.65	-0.1
2,258,310	-		Sama_1853	0.65	+0.1
2,258,310	-		Sama_1853	0.65	-0.3
2,258,346	-		Sama_1853	0.67	-1.5
2,258,346	-		Sama_1853	0.67	+1.1
2,258,456	+		Sama_1853	0.73	+0.3
2,258,634	+		Sama_1853	0.83	-1.7
2,258,634	+		Sama_1853	0.83	-0.9
2,258,635	-		Sama_1853	0.83	-0.9
2,258,638	-		Sama_1853	0.83	+1.0
2,258,667	+		Sama_1853	0.85	+0.5
2,258,668	-		Sama_1853	0.85	-0.2
2,258,811	+				-0.7
2,258,812	-				+0.5
2,258,940	+				-0.9
2,258,941	-				+1.5
2,258,954	+				+0.5
2,258,954	+				+0.4
2,258,954	+				-0.3
2,258,954	+				-0.4
2,258,955	-				-0.7
2,258,955	-				-0.3
2,258,955	-				-0.6
2,258,955	-				+1.2
2,258,955	-				+0.2
2,259,053	-		Sama_1854	0.45	-0.0
2,259,206	-				-0.3
2,259,206	-				-0.2
2,259,283	-				-0.7
2,259,307	-				+0.2
2,259,340	+				-0.9
2,259,340	+				-0.0
2,259,340	+				+0.3
2,259,341	-				+0.0
2,259,432	+	thiH	Sama_1855	0.11	-0.2
2,259,448	+	thiH	Sama_1855	0.13	-2.1
2,259,448	+	thiH	Sama_1855	0.13	+0.6
2,259,448	+	thiH	Sama_1855	0.13	-2.0
2,259,448	+	thiH	Sama_1855	0.13	+0.3
2,259,448	+	thiH	Sama_1855	0.13	-0.2
2,259,449	-	thiH	Sama_1855	0.13	-0.2
2,259,449	-	thiH	Sama_1855	0.13	-1.4
2,259,449	-	thiH	Sama_1855	0.13	+0.6
2,259,449	-	thiH	Sama_1855	0.13	+1.8
2,259,449	-	thiH	Sama_1855	0.13	-1.3
2,259,568	+	thiH	Sama_1855	0.24	-0.2
2,259,568	+	thiH	Sama_1855	0.24	+1.3
2,259,569	-	thiH	Sama_1855	0.24	-2.1
2,259,569	-	thiH	Sama_1855	0.24	-0.3
2,259,569	-	thiH	Sama_1855	0.24	-0.8
2,259,569	-	thiH	Sama_1855	0.24	-1.5
2,259,569	-	thiH	Sama_1855	0.24	+0.3
2,259,587	-	thiH	Sama_1855	0.25	-1.7
2,259,649	+	thiH	Sama_1855	0.31	+1.1
2,259,649	+	thiH	Sama_1855	0.31	-0.3
2,259,684	+	thiH	Sama_1855	0.34	+2.3
2,259,793	+	thiH	Sama_1855	0.44	-0.9
2,259,809	-	thiH	Sama_1855	0.45	+1.3
2,259,847	-	thiH	Sama_1855	0.49	+1.1
2,259,847	-	thiH	Sama_1855	0.49	+0.3
2,259,847	-	thiH	Sama_1855	0.49	+0.8
2,259,847	-	thiH	Sama_1855	0.49	-0.1
2,259,862	-	thiH	Sama_1855	0.50	+0.4
2,259,955	-	thiH	Sama_1855	0.58	-0.0
2,259,988	+	thiH	Sama_1855	0.61	-0.4
2,260,051	-	thiH	Sama_1855	0.67	-2.4
2,260,085	-	thiH	Sama_1855	0.70	-0.0
2,260,115	-	thiH	Sama_1855	0.73	+0.3
2,260,143	+	thiH	Sama_1855	0.75	+1.3
2,260,176	+	thiH	Sama_1855	0.78	+0.3
2,260,176	+	thiH	Sama_1855	0.78	+0.3
2,260,176	+	thiH	Sama_1855	0.78	-0.2
2,260,177	-	thiH	Sama_1855	0.78	+0.2
2,260,177	-	thiH	Sama_1855	0.78	-0.3
2,260,188	+	thiH	Sama_1855	0.79	-1.2
2,260,188	+	thiH	Sama_1855	0.79	+0.8
2,260,188	+	thiH	Sama_1855	0.79	+0.5
2,260,189	-	thiH	Sama_1855	0.79	-0.7
2,260,189	-	thiH	Sama_1855	0.79	-1.7