Strain Fitness in Shewanella amazonensis SB2B around Sama_1400

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,697,887	+		Sama_1399	0.77	-0.1
1,697,931	+		Sama_1399	0.79	-0.4
1,698,045	+		Sama_1399	0.83	+0.1
1,698,054	+		Sama_1399	0.83	-1.1
1,698,054	+		Sama_1399	0.83	-2.2
1,698,054	+		Sama_1399	0.83	-0.1
1,698,054	+		Sama_1399	0.83	-0.7
1,698,055	-		Sama_1399	0.83	+0.0
1,698,055	-		Sama_1399	0.83	+2.9
1,698,055	-		Sama_1399	0.83	-1.0
1,698,061	+		Sama_1399	0.83	+0.2
1,698,061	+		Sama_1399	0.83	-2.1
1,698,062	-		Sama_1399	0.83	-0.1
1,698,064	-		Sama_1399	0.83	+0.1
1,698,078	+		Sama_1399	0.84	+0.5
1,698,156	+		Sama_1399	0.86	-0.7
1,698,241	+		Sama_1399	0.89	+1.3
1,698,312	+				+0.2
1,698,313	-				+2.7
1,698,313	-				-2.0
1,698,356	-				-0.5
1,698,356	-				-0.5
1,698,358	+				-0.7
1,698,359	-				+2.7
1,698,538	+				-0.1
1,698,566	-				-0.6
1,698,598	+				-0.1
1,698,598	+				-1.8
1,698,599	-				-0.7
1,698,599	-				+0.1
1,698,599	-				-0.4
1,698,613	+				+0.0
1,698,625	+				-0.6
1,698,626	-				-1.7
1,698,626	-				-0.2
1,698,626	-				+0.5
1,698,626	-				+0.5
1,698,626	-				-0.7
1,698,626	-				+0.8
1,698,660	+				+0.5
1,698,660	+				-1.3
1,698,687	-				-1.1
1,698,841	+				-0.1
1,698,907	-				-1.7
1,698,907	-				-1.7
1,698,907	-				-2.0
1,698,962	-		Sama_1400	0.13	-3.4
1,698,988	+		Sama_1400	0.16	-2.1
1,698,989	-		Sama_1400	0.16	-1.4
1,698,989	-		Sama_1400	0.16	-1.2
1,698,989	-		Sama_1400	0.16	-2.1
1,698,989	-		Sama_1400	0.16	-1.8
1,698,989	-		Sama_1400	0.16	-2.0
1,698,990	+		Sama_1400	0.16	-2.7
1,698,990	+		Sama_1400	0.16	+0.3
1,698,990	+		Sama_1400	0.16	-2.4
1,698,991	-		Sama_1400	0.16	-1.7
1,698,991	-		Sama_1400	0.16	-2.1
1,698,991	-		Sama_1400	0.16	-1.2
1,699,006	+		Sama_1400	0.18	-1.5
1,699,007	-		Sama_1400	0.18	-1.2
1,699,071	-		Sama_1400	0.24	-1.6
1,699,156	-		Sama_1400	0.33	-3.9
1,699,156	-		Sama_1400	0.33	-2.9
1,699,185	+		Sama_1400	0.36	-2.0
1,699,185	+		Sama_1400	0.36	-2.0
1,699,185	+		Sama_1400	0.36	-2.7
1,699,186	-		Sama_1400	0.36	-0.5
1,699,186	-		Sama_1400	0.36	-3.1
1,699,268	-		Sama_1400	0.44	-1.0
1,699,268	-		Sama_1400	0.44	-3.6
1,699,285	+		Sama_1400	0.46	-3.9
1,699,286	-		Sama_1400	0.46	-1.8
1,699,286	-		Sama_1400	0.46	+0.3
1,699,287	+		Sama_1400	0.46	-1.0
1,699,287	+		Sama_1400	0.46	-2.4
1,699,287	+		Sama_1400	0.46	-1.0
1,699,287	+		Sama_1400	0.46	-1.6
1,699,287	+		Sama_1400	0.46	-2.7
1,699,287	+		Sama_1400	0.46	-2.6
1,699,287	+		Sama_1400	0.46	-3.8
1,699,287	+		Sama_1400	0.46	-0.7
1,699,287	+		Sama_1400	0.46	-2.6
1,699,287	+		Sama_1400	0.46	-0.7
1,699,287	+		Sama_1400	0.46	-0.9
1,699,287	+		Sama_1400	0.46	-2.5
1,699,288	-		Sama_1400	0.46	-2.7
1,699,288	-		Sama_1400	0.46	+1.3
1,699,288	-		Sama_1400	0.46	-1.0
1,699,288	-		Sama_1400	0.46	-4.6
1,699,288	-		Sama_1400	0.46	-1.8
1,699,288	-		Sama_1400	0.46	-2.9
1,699,288	-		Sama_1400	0.46	-0.7
1,699,288	-		Sama_1400	0.46	-1.0
1,699,288	-		Sama_1400	0.46	-2.1
1,699,288	-		Sama_1400	0.46	-3.2
1,699,288	-		Sama_1400	0.46	-2.6
1,699,288	-		Sama_1400	0.46	-3.4
1,699,288	-		Sama_1400	0.46	-2.6
1,699,288	-		Sama_1400	0.46	-1.7
1,699,288	-		Sama_1400	0.46	-3.4
1,699,288	-		Sama_1400	0.46	-2.8
1,699,288	-		Sama_1400	0.46	-1.0
1,699,288	-		Sama_1400	0.46	-3.6
1,699,288	-		Sama_1400	0.46	-3.1
1,699,288	-		Sama_1400	0.46	-2.2
1,699,288	-		Sama_1400	0.46	-3.6
1,699,288	-		Sama_1400	0.46	-1.0
1,699,288	-		Sama_1400	0.46	-3.0
1,699,288	-		Sama_1400	0.46	-0.2
1,699,288	-		Sama_1400	0.46	-4.0
1,699,293	-		Sama_1400	0.46	-3.2
1,699,561	+		Sama_1400	0.73	-2.2
1,699,609	-		Sama_1400	0.78	-3.3
1,699,816	-				-1.1
1,699,847	+				-1.8
1,699,848	-				+2.9
1,699,848	-				+0.2
1,699,848	-				-1.5
1,699,850	+				-2.2
1,699,850	+				-2.0
1,699,850	+				-0.7
1,699,850	+				-2.7
1,699,850	+				-0.1
1,699,851	-				-0.2
1,699,851	-				-0.5
1,699,851	-				-2.7
1,699,851	-				-0.5
1,699,851	-				+1.3
1,699,851	-				-1.1
1,699,851	-				-3.1
1,699,851	-				+1.7
1,699,851	-				-1.2
1,699,851	-				+0.8
1,699,851	-				+0.6
1,699,851	-				-0.2
1,699,851	-				+0.2
1,699,851	-				-0.5
1,699,851	-				+0.6
1,699,851	-				-1.2
1,699,851	-				-1.0
1,699,851	-				-0.9
1,699,856	+				-2.1
1,699,856	+				-0.2
1,699,856	+				-1.1
1,699,856	+				-0.5
1,699,857	-				-0.0
1,699,857	-				+0.8
1,699,857	-				-0.8
1,699,857	-				-0.6
1,699,857	-				+0.7
1,699,857	-				-0.5
1,699,857	-				+1.0
1,699,885	+				-1.8
1,699,920	+				-0.2
1,699,920	+				-0.7
1,699,920	+				-0.4
1,699,920	+				-0.1
1,699,920	+				+0.9
1,699,920	+				-0.8
1,699,920	+				-0.2
1,699,920	+				-1.8
1,699,920	+				-1.7
1,699,921	-				-0.7
1,699,921	-				-0.4
1,699,921	-				+0.3
1,699,922	+				-2.6
1,699,922	+				-0.7
1,699,923	-				+0.8
1,700,091	+		Sama_1401	0.18	-0.9
1,700,143	-		Sama_1401	0.22	-1.0
1,700,154	-		Sama_1401	0.22	-0.7
1,700,225	+		Sama_1401	0.28	+0.9
1,700,225	+		Sama_1401	0.28	-0.5
1,700,226	-		Sama_1401	0.28	-0.5
1,700,226	-		Sama_1401	0.28	-1.2
1,700,226	-		Sama_1401	0.28	-0.9
1,700,246	+		Sama_1401	0.29	+0.3
1,700,247	-		Sama_1401	0.29	-0.6
1,700,247	-		Sama_1401	0.29	-0.7
1,700,247	-		Sama_1401	0.29	-0.7
1,700,295	+		Sama_1401	0.33	+0.7
1,700,312	+		Sama_1401	0.34	+1.8
1,700,312	+		Sama_1401	0.34	+0.8
1,700,312	+		Sama_1401	0.34	-1.8
1,700,312	+		Sama_1401	0.34	-0.7
1,700,312	+		Sama_1401	0.34	-0.5
1,700,313	-		Sama_1401	0.34	-1.2
1,700,313	-		Sama_1401	0.34	-0.0
1,700,313	-		Sama_1401	0.34	-0.7
1,700,326	-		Sama_1401	0.35	+0.1
1,700,326	-		Sama_1401	0.35	+0.1
1,700,429	+		Sama_1401	0.43	+0.1
1,700,429	+		Sama_1401	0.43	+0.8
1,700,429	+		Sama_1401	0.43	-0.6
1,700,430	-		Sama_1401	0.43	+0.3
1,700,430	-		Sama_1401	0.43	-0.1
1,700,438	+		Sama_1401	0.44	-0.7
1,700,438	+		Sama_1401	0.44	-0.2
1,700,441	+		Sama_1401	0.44	-0.4
1,700,442	-		Sama_1401	0.44	-0.1
1,700,442	-		Sama_1401	0.44	-0.2
1,700,442	-		Sama_1401	0.44	-0.2
1,700,442	-		Sama_1401	0.44	-0.2
1,700,442	-		Sama_1401	0.44	-0.4
1,700,442	-		Sama_1401	0.44	+1.3
1,700,442	-		Sama_1401	0.44	-0.7
1,700,460	+		Sama_1401	0.45	-0.5
1,700,460	+		Sama_1401	0.45	-0.2
1,700,460	+		Sama_1401	0.45	-1.0
1,700,460	+		Sama_1401	0.45	-1.7
1,700,461	-		Sama_1401	0.45	-0.3
1,700,465	-		Sama_1401	0.46	-1.0
1,700,608	+		Sama_1401	0.56	-1.0
1,700,631	+		Sama_1401	0.58	+0.8
1,700,631	+		Sama_1401	0.58	-0.5
1,700,631	+		Sama_1401	0.58	+0.6
1,700,632	-		Sama_1401	0.58	+0.2
1,700,645	-		Sama_1401	0.59	+0.6
1,700,658	-		Sama_1401	0.60	-0.1
1,700,743	+		Sama_1401	0.67	-0.5
1,700,743	+		Sama_1401	0.67	-0.2
1,700,744	-		Sama_1401	0.67	+0.3
1,700,744	-		Sama_1401	0.67	-0.7
1,700,744	-		Sama_1401	0.67	-0.7
1,700,754	-		Sama_1401	0.67	-0.0
1,700,813	+		Sama_1401	0.72	+0.6
1,700,813	+		Sama_1401	0.72	-0.6
1,700,814	-		Sama_1401	0.72	-0.8
1,700,814	-		Sama_1401	0.72	-1.2
1,700,814	-		Sama_1401	0.72	-1.3
1,700,820	+		Sama_1401	0.72	-1.5
1,700,821	-		Sama_1401	0.72	-1.0