Strain Fitness in Shewanella amazonensis SB2B around Sama_1209

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,483,299	+		Sama_1208	0.67	+0.9
1,483,299	+		Sama_1208	0.67	+0.5
1,483,300	-		Sama_1208	0.67	+0.5
1,483,300	-		Sama_1208	0.67	+0.7
1,483,330	+		Sama_1208	0.69	-2.2
1,483,330	+		Sama_1208	0.69	+1.0
1,483,350	+		Sama_1208	0.70	-0.6
1,483,382	+		Sama_1208	0.72	+0.0
1,483,382	+		Sama_1208	0.72	-0.2
1,483,411	-		Sama_1208	0.73	+0.4
1,483,469	+		Sama_1208	0.76	-0.8
1,483,469	+		Sama_1208	0.76	-0.3
1,483,469	+		Sama_1208	0.76	+1.1
1,483,469	+		Sama_1208	0.76	+0.5
1,483,470	-		Sama_1208	0.76	-0.0
1,483,470	-		Sama_1208	0.76	+1.5
1,483,473	+		Sama_1208	0.76	+0.7
1,483,474	-		Sama_1208	0.76	+1.0
1,483,474	-		Sama_1208	0.76	-0.1
1,483,509	-		Sama_1208	0.78	-0.5
1,483,509	-		Sama_1208	0.78	+0.6
1,483,509	-		Sama_1208	0.78	-0.2
1,483,551	-		Sama_1208	0.80	+0.5
1,483,556	+		Sama_1208	0.80	+0.5
1,483,556	+		Sama_1208	0.80	+0.9
1,483,557	-		Sama_1208	0.80	+0.9
1,483,576	+		Sama_1208	0.81	-0.3
1,483,577	-		Sama_1208	0.81	+0.3
1,483,632	-		Sama_1208	0.84	-0.1
1,483,632	-		Sama_1208	0.84	+0.7
1,483,650	+		Sama_1208	0.85	-0.3
1,483,691	+		Sama_1208	0.87	-0.6
1,483,839	+				-0.5
1,483,903	+				-1.2
1,483,904	-				+0.9
1,483,955	+				-1.0
1,483,955	+				-1.0
1,483,955	+				-0.3
1,483,955	+				+0.3
1,483,956	-				-1.4
1,483,956	-				-0.7
1,484,021	+				+0.3
1,484,021	+				+0.7
1,484,022	-				+0.5
1,484,060	-				+1.1
1,484,067	-				-1.1
1,484,149	+				-0.2
1,484,150	-				+0.5
1,484,150	-				-0.5
1,484,225	+				-1.4
1,484,225	+				+0.5
1,484,225	+				+0.6
1,484,225	+				+0.4
1,484,226	-				-0.5
1,484,226	-				+0.1
1,484,226	-				+0.3
1,484,247	+				+1.1
1,484,247	+				-1.8
1,484,248	-				+2.0
1,484,248	-				-0.9
1,484,253	+				-1.4
1,484,260	+				+1.5
1,484,260	+				-2.0
1,484,280	+				-0.6
1,484,280	+				+0.7
1,484,280	+				+0.1
1,484,281	-				+0.6
1,484,281	-				+0.7
1,484,281	-				+0.9
1,484,281	-				-0.5
1,484,281	-				-0.7
1,484,281	-				-0.8
1,484,281	-				+0.5
1,484,281	-				+0.5
1,484,304	-				-0.7
1,484,348	+				-2.0
1,484,404	+				+0.1
1,484,404	+				+0.9
1,484,404	+				+1.7
1,484,404	+				+0.0
1,484,404	+				-0.8
1,484,404	+				-0.2
1,484,404	+				+0.6
1,484,405	-				+1.3
1,484,405	-				-1.3
1,484,405	-				+1.2
1,484,405	-				+1.1
1,484,405	-				-2.1
1,484,490	+		Sama_1209	0.11	+1.4
1,484,491	-		Sama_1209	0.11	-0.5
1,484,517	-		Sama_1209	0.12	+1.5
1,484,520	-		Sama_1209	0.12	+0.1
1,484,520	-		Sama_1209	0.12	-1.3
1,484,559	+		Sama_1209	0.14	+0.6
1,484,559	+		Sama_1209	0.14	+0.7
1,484,564	+		Sama_1209	0.14	-0.3
1,484,565	-		Sama_1209	0.14	-0.8
1,484,565	-		Sama_1209	0.14	-0.5
1,484,565	-		Sama_1209	0.14	+2.1
1,484,588	+		Sama_1209	0.15	-2.4
1,484,588	+		Sama_1209	0.15	+1.5
1,484,588	+		Sama_1209	0.15	-1.7
1,484,588	+		Sama_1209	0.15	+0.6
1,484,588	+		Sama_1209	0.15	+0.7
1,484,588	+		Sama_1209	0.15	+2.6
1,484,588	+		Sama_1209	0.15	+1.5
1,484,588	+		Sama_1209	0.15	+0.1
1,484,588	+		Sama_1209	0.15	+0.5
1,484,588	+		Sama_1209	0.15	+0.5
1,484,588	+		Sama_1209	0.15	-0.1
1,484,588	+		Sama_1209	0.15	+0.5
1,484,588	+		Sama_1209	0.15	-2.1
1,484,589	-		Sama_1209	0.15	+1.7
1,484,589	-		Sama_1209	0.15	-0.5
1,484,589	-		Sama_1209	0.15	-0.0
1,484,589	-		Sama_1209	0.15	+0.7
1,484,589	-		Sama_1209	0.15	-0.8
1,484,589	-		Sama_1209	0.15	+1.5
1,484,589	-		Sama_1209	0.15	-1.1
1,484,589	-		Sama_1209	0.15	+0.3
1,484,589	-		Sama_1209	0.15	+0.1
1,484,589	-		Sama_1209	0.15	+0.6
1,484,593	+		Sama_1209	0.15	+0.1
1,484,719	+		Sama_1209	0.21	+0.1
1,484,719	+		Sama_1209	0.21	+1.5
1,484,719	+		Sama_1209	0.21	+1.2
1,484,720	-		Sama_1209	0.21	+0.0
1,484,725	+		Sama_1209	0.21	-0.1
1,484,725	+		Sama_1209	0.21	+0.5
1,484,726	-		Sama_1209	0.21	-0.1
1,484,726	-		Sama_1209	0.21	-1.6
1,484,726	-		Sama_1209	0.21	+0.1
1,484,985	+		Sama_1209	0.33	+0.6
1,484,986	-		Sama_1209	0.33	+0.5
1,485,007	+		Sama_1209	0.34	-0.5
1,485,007	+		Sama_1209	0.34	-0.7
1,485,008	-		Sama_1209	0.34	-0.2
1,485,008	-		Sama_1209	0.34	-1.2
1,485,008	-		Sama_1209	0.34	-0.6
1,485,028	+		Sama_1209	0.35	+0.1
1,485,029	-		Sama_1209	0.35	+0.2
1,485,029	-		Sama_1209	0.35	+0.5
1,485,029	-		Sama_1209	0.35	+0.2
1,485,051	-		Sama_1209	0.36	+0.8
1,485,060	-		Sama_1209	0.37	-1.1
1,485,064	+		Sama_1209	0.37	-0.5
1,485,065	-		Sama_1209	0.37	+0.2
1,485,065	-		Sama_1209	0.37	+1.1
1,485,076	+		Sama_1209	0.37	-0.5
1,485,076	+		Sama_1209	0.37	-0.3
1,485,076	+		Sama_1209	0.37	-1.1
1,485,076	+		Sama_1209	0.37	+0.5
1,485,077	-		Sama_1209	0.37	-0.5
1,485,077	-		Sama_1209	0.37	+0.9
1,485,113	+		Sama_1209	0.39	+1.0
1,485,117	+		Sama_1209	0.39	+0.6
1,485,117	+		Sama_1209	0.39	+0.1
1,485,118	-		Sama_1209	0.39	-1.3
1,485,118	-		Sama_1209	0.39	+0.1
1,485,118	-		Sama_1209	0.39	-0.5
1,485,197	+		Sama_1209	0.43	+1.2
1,485,198	-		Sama_1209	0.43	-0.3
1,485,198	-		Sama_1209	0.43	+0.7
1,485,216	+		Sama_1209	0.44	-0.1
1,485,217	-		Sama_1209	0.44	+0.6
1,485,217	-		Sama_1209	0.44	+0.2
1,485,217	-		Sama_1209	0.44	+0.1
1,485,222	-		Sama_1209	0.44	+0.5
1,485,222	-		Sama_1209	0.44	+0.3
1,485,256	+		Sama_1209	0.46	-0.2
1,485,256	+		Sama_1209	0.46	-0.9
1,485,257	-		Sama_1209	0.46	-0.8
1,485,257	-		Sama_1209	0.46	-0.2
1,485,257	-		Sama_1209	0.46	-0.4
1,485,257	-		Sama_1209	0.46	+0.1
1,485,302	-		Sama_1209	0.48	-0.8
1,485,326	+		Sama_1209	0.49	+1.7
1,485,326	+		Sama_1209	0.49	-0.4
1,485,326	+		Sama_1209	0.49	-0.6
1,485,326	+		Sama_1209	0.49	+1.2
1,485,326	+		Sama_1209	0.49	-0.5
1,485,327	-		Sama_1209	0.49	+0.1
1,485,346	+		Sama_1209	0.50	-0.5
1,485,346	+		Sama_1209	0.50	-1.2
1,485,346	+		Sama_1209	0.50	+0.5
1,485,347	-		Sama_1209	0.50	+0.5
1,485,347	-		Sama_1209	0.50	+1.2
1,485,352	+		Sama_1209	0.50	+0.3
1,485,352	+		Sama_1209	0.50	-1.4
1,485,352	+		Sama_1209	0.50	-1.1
1,485,352	+		Sama_1209	0.50	-0.7
1,485,352	+		Sama_1209	0.50	+1.2
1,485,353	-		Sama_1209	0.50	-0.3
1,485,353	-		Sama_1209	0.50	+0.3
1,485,353	-		Sama_1209	0.50	-0.8
1,485,389	+		Sama_1209	0.52	+0.0
1,485,389	+		Sama_1209	0.52	-1.9
1,485,389	+		Sama_1209	0.52	-0.0
1,485,417	-		Sama_1209	0.53	+0.7
1,485,453	+		Sama_1209	0.55	+0.0
1,485,453	+		Sama_1209	0.55	-0.5
1,485,454	-		Sama_1209	0.55	+0.1
1,485,493	+		Sama_1209	0.56	-0.9
1,485,493	+		Sama_1209	0.56	+0.0
1,485,493	+		Sama_1209	0.56	+0.6
1,485,493	+		Sama_1209	0.56	-0.7
1,485,494	-		Sama_1209	0.56	+1.1
1,485,508	+		Sama_1209	0.57	+2.5
1,485,509	-		Sama_1209	0.57	+0.1
1,485,509	-		Sama_1209	0.57	+0.0
1,485,518	+		Sama_1209	0.57	+1.6
1,485,519	-		Sama_1209	0.58	+1.9
1,485,544	+		Sama_1209	0.59	-1.3
1,485,545	-		Sama_1209	0.59	+0.9
1,485,545	-		Sama_1209	0.59	+1.5
1,485,580	+		Sama_1209	0.60	-1.3
1,485,580	+		Sama_1209	0.60	+0.7
1,485,581	-		Sama_1209	0.60	+0.5
1,485,581	-		Sama_1209	0.60	-1.1
1,485,602	+		Sama_1209	0.61	-0.6
1,485,602	+		Sama_1209	0.61	+0.8
1,485,620	+		Sama_1209	0.62	+0.1
1,485,620	+		Sama_1209	0.62	-0.1
1,485,620	+		Sama_1209	0.62	-0.4
1,485,620	+		Sama_1209	0.62	-1.1
1,485,621	-		Sama_1209	0.62	-0.4
1,485,622	+		Sama_1209	0.62	+0.2
1,485,622	+		Sama_1209	0.62	-0.8
1,485,622	+		Sama_1209	0.62	+1.9
1,485,622	+		Sama_1209	0.62	+0.2
1,485,622	+		Sama_1209	0.62	+1.0
1,485,622	+		Sama_1209	0.62	-0.1
1,485,622	+		Sama_1209	0.62	-1.3
1,485,622	+		Sama_1209	0.62	+1.0
1,485,623	-		Sama_1209	0.62	+1.5
1,485,623	-		Sama_1209	0.62	-0.5
1,485,623	-		Sama_1209	0.62	+1.1
1,485,623	-		Sama_1209	0.62	+1.1
1,485,623	-		Sama_1209	0.62	-1.6
1,485,623	-		Sama_1209	0.62	-1.9
1,485,623	-		Sama_1209	0.62	-0.9
1,485,626	+		Sama_1209	0.62	+0.1
1,485,627	-		Sama_1209	0.62	-0.0
1,485,627	-		Sama_1209	0.62	+0.5
1,485,748	+		Sama_1209	0.68	+0.3
1,485,748	+		Sama_1209	0.68	-0.1
1,485,748	+		Sama_1209	0.68	-0.5
1,485,749	-		Sama_1209	0.68	-2.1
1,485,761	+		Sama_1209	0.69	-1.3
1,485,820	+		Sama_1209	0.71	+0.8
1,485,820	+		Sama_1209	0.71	-0.3
1,485,821	-		Sama_1209	0.71	-0.6
1,485,878	+		Sama_1209	0.74	+0.5
1,485,924	-		Sama_1209	0.76	+1.1
1,485,926	+		Sama_1209	0.76	-2.3
1,485,939	-		Sama_1209	0.77	+0.2
1,485,941	-		Sama_1209	0.77	-0.2
1,485,946	+		Sama_1209	0.77	-0.3
1,485,946	+		Sama_1209	0.77	-2.3
1,485,946	+		Sama_1209	0.77	+1.0
1,485,946	+		Sama_1209	0.77	+0.4
1,485,946	+		Sama_1209	0.77	+1.1
1,485,946	+		Sama_1209	0.77	+0.2
1,485,947	-		Sama_1209	0.77	-0.2
1,485,986	+		Sama_1209	0.79	+1.0
1,485,986	+		Sama_1209	0.79	-0.7
1,485,987	-		Sama_1209	0.79	-0.5
1,485,999	+		Sama_1209	0.79	-2.1
1,486,000	-		Sama_1209	0.79	-1.7
1,486,000	-		Sama_1209	0.79	-0.0
1,486,000	-		Sama_1209	0.79	+0.0
1,486,087	+		Sama_1209	0.83	+0.7
1,486,087	+		Sama_1209	0.83	+1.5
1,486,088	-		Sama_1209	0.84	+2.1
1,486,088	-		Sama_1209	0.84	-0.3
1,486,103	-		Sama_1209	0.84	+0.5
1,486,254	+				+0.3
1,486,254	+				+1.1
1,486,254	+				+0.3
1,486,392	+				-0.2
1,486,448	+				+1.5
1,486,448	+				+1.3
1,486,449	-				+0.1
1,486,451	+				-0.4
1,486,451	+				-0.3
1,486,451	+				-0.0
1,486,451	+				+1.5
1,486,452	-				+0.4
1,486,452	-				+0.6
1,486,467	+				-0.9
1,486,467	+				-0.1
1,486,467	+				-1.0
1,486,468	-				-0.5
1,486,483	+				+0.5
1,486,484	-				-0.1
1,486,484	-				+0.1
1,486,495	-				+0.6
1,486,514	-				+0.3
1,486,517	+				+0.8
1,486,517	+				+0.8
1,486,536	+				-0.4
1,486,537	-				-0.4
1,486,537	-				+0.7
1,486,537	-				+1.5
1,486,574	+				-1.7
1,486,575	-				+0.1
1,486,597	-				-0.5
1,486,615	+				-0.7
1,486,616	-				+0.7
1,486,629	+				+0.9
1,486,630	-				-0.5
1,486,653	+				-0.2
1,486,653	+				+0.3
1,486,653	+				-0.2
1,486,654	-				+1.5
1,486,679	-				-0.2
1,486,692	+				+0.7
1,486,743	-				+0.5
1,486,749	+				+1.1
1,486,749	+				+0.8
1,486,749	+				-1.1
1,486,750	-				-0.9
1,486,750	-				-0.3
1,486,750	-				-1.5
1,486,750	-				+0.7
1,486,812	-				+0.4
1,486,820	+				+0.4
1,486,820	+				-0.4
1,486,820	+				+2.4
1,486,820	+				+0.8
1,486,921	+				-0.0
1,486,921	+				-0.1
1,486,921	+				+0.1
1,486,921	+				+0.1
1,486,921	+				+0.6
1,486,921	+				-0.3
1,486,921	+				+0.5
1,486,921	+				+0.1
1,486,922	-				-1.2
1,486,922	-				-0.3
1,486,922	-				-1.1
1,486,922	-				-1.3
1,486,922	-				-0.0
1,487,116	+		Sama_1210	0.16	+0.5
1,487,116	+		Sama_1210	0.16	-0.9
1,487,125	+		Sama_1210	0.16	-0.2
1,487,125	+		Sama_1210	0.16	+0.9
1,487,172	-		Sama_1210	0.18	-0.1
1,487,192	+		Sama_1210	0.19	-0.1
1,487,192	+		Sama_1210	0.19	-0.3
1,487,192	+		Sama_1210	0.19	-1.3
1,487,192	+		Sama_1210	0.19	-0.3
1,487,193	-		Sama_1210	0.19	+0.2
1,487,193	-		Sama_1210	0.19	-0.1
1,487,251	+		Sama_1210	0.22	-0.4
1,487,251	+		Sama_1210	0.22	+1.3
1,487,251	+		Sama_1210	0.22	-0.5
1,487,252	-		Sama_1210	0.22	-2.3
1,487,252	-		Sama_1210	0.22	-0.1
1,487,339	+		Sama_1210	0.26	+0.0
1,487,346	-		Sama_1210	0.26	-0.0
1,487,346	-		Sama_1210	0.26	+0.1
1,487,346	-		Sama_1210	0.26	-1.3
1,487,346	-		Sama_1210	0.26	-0.6
1,487,379	-		Sama_1210	0.28	+0.7
1,487,424	+		Sama_1210	0.30	+0.6
1,487,424	+		Sama_1210	0.30	-0.4
1,487,424	+		Sama_1210	0.30	+0.6
1,487,424	+		Sama_1210	0.30	+1.1
1,487,424	+		Sama_1210	0.30	-0.3
1,487,424	+		Sama_1210	0.30	+0.2
1,487,424	+		Sama_1210	0.30	+0.8
1,487,424	+		Sama_1210	0.30	+0.5
1,487,424	+		Sama_1210	0.30	-2.4
1,487,425	-		Sama_1210	0.30	-0.1
1,487,425	-		Sama_1210	0.30	-1.2
1,487,425	-		Sama_1210	0.30	-0.4
1,487,425	-		Sama_1210	0.30	-0.3
1,487,425	-		Sama_1210	0.30	-1.1
1,487,425	-		Sama_1210	0.30	-0.1
1,487,425	-		Sama_1210	0.30	-1.5
1,487,425	-		Sama_1210	0.30	-0.5
1,487,426	+		Sama_1210	0.30	-0.0
1,487,427	-		Sama_1210	0.30	+0.0