Strain Fitness in Shewanella amazonensis SB2B around Sama_1179

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,439,288	+		Sama_1177	0.89	+1.0
1,439,288	+		Sama_1177	0.89	+2.1
1,439,288	+		Sama_1177	0.89	+4.2
1,439,316	+				+4.6
1,439,316	+				+3.7
1,439,317	-				-1.5
1,439,318	+				+4.0
1,439,318	+				+3.6
1,439,318	+				+4.1
1,439,331	-				+0.2
1,439,492	+				-0.1
1,439,492	+				+1.0
1,439,492	+				+0.2
1,439,492	+				+0.0
1,439,492	+				-2.5
1,439,492	+				+0.9
1,439,493	-				+0.1
1,439,493	-				+0.3
1,439,493	-				-1.0
1,439,493	-				-1.1
1,439,493	-				-0.3
1,439,493	-				+1.5
1,439,493	-				+0.6
1,439,530	+				+4.0
1,439,556	+				+0.2
1,439,556	+				-2.3
1,439,556	+				+1.5
1,439,556	+				-0.1
1,439,557	-				-0.1
1,439,566	+				+0.2
1,439,581	-				+0.1
1,439,587	+				-0.5
1,439,588	-				-0.5
1,439,588	-				-0.5
1,439,588	-				-0.3
1,439,596	+				+0.6
1,439,782	+		Sama_1178	0.33	-0.2
1,439,796	+		Sama_1178	0.35	-0.3
1,439,797	-		Sama_1178	0.35	-0.4
1,439,797	-		Sama_1178	0.35	-0.1
1,439,797	-		Sama_1178	0.35	-0.0
1,439,797	-		Sama_1178	0.35	-2.4
1,439,850	+		Sama_1178	0.43	-0.5
1,439,850	+		Sama_1178	0.43	-0.5
1,439,877	+		Sama_1178	0.47	-2.2
1,439,878	-		Sama_1178	0.47	+0.3
1,439,955	+		Sama_1178	0.57	-2.1
1,439,955	+		Sama_1178	0.57	+0.9
1,439,955	+		Sama_1178	0.57	-1.2
1,439,960	+		Sama_1178	0.58	-0.1
1,439,960	+		Sama_1178	0.58	-0.9
1,439,960	+		Sama_1178	0.58	-0.3
1,439,961	-		Sama_1178	0.58	-0.6
1,439,976	+		Sama_1178	0.60	+0.9
1,439,976	+		Sama_1178	0.60	+1.9
1,439,977	-		Sama_1178	0.61	+0.7
1,439,977	-		Sama_1178	0.61	-2.6
1,439,977	-		Sama_1178	0.61	+1.5
1,439,987	+		Sama_1178	0.62	+0.3
1,440,026	+		Sama_1178	0.67	-1.8
1,440,027	-		Sama_1178	0.68	-1.1
1,440,147	+		Sama_1178	0.84	-0.4
1,440,257	+				-1.4
1,440,257	+				-1.0
1,440,257	+				+2.0
1,440,257	+				+0.4
1,440,258	-				-0.2
1,440,258	-				+0.3
1,440,258	-				+2.0
1,440,258	-				+0.0
1,440,334	+		Sama_1179	0.26	-1.1
1,440,433	+		Sama_1179	0.68	-1.1
1,440,433	+		Sama_1179	0.68	+0.8
1,440,452	-		Sama_1179	0.77	-0.7
1,440,456	+		Sama_1179	0.78	+0.1
1,440,456	+		Sama_1179	0.78	+1.3
1,440,457	-		Sama_1179	0.79	-0.1
1,440,457	-		Sama_1179	0.79	+0.1
1,440,505	+				-2.0
1,440,505	+				-0.8
1,440,505	+				+0.1
1,440,505	+				+2.1
1,440,505	+				-1.1
1,440,505	+				-0.1
1,440,505	+				+1.5
1,440,506	-				-0.5
1,440,506	-				-0.5
1,440,506	-				-0.5
1,440,506	-				-1.0
1,440,506	-				+0.5
1,440,506	-				-0.6
1,440,506	-				-2.1
1,440,506	-				-0.1
1,440,522	+				-1.3
1,440,523	-				+0.9
1,440,523	-				-1.3
1,440,523	-				-0.1
1,440,523	-				-1.2
1,440,523	-				-0.7
1,440,544	+				-0.5
1,440,544	+				-0.8
1,440,545	-				-0.1
1,440,545	-				-1.1
1,440,561	+				-1.2
1,440,562	-				+0.1
1,440,574	+				-1.1
1,440,574	+				-0.1
1,440,575	-				+0.4
1,440,575	-				-1.6
1,440,575	-				+0.0
1,440,575	-				+0.6
1,440,581	+				-0.8
1,440,614	+				+0.5
1,440,614	+				-0.3
1,440,614	+				+0.3
1,440,615	-				+0.1
1,440,615	-				+0.2
1,440,644	-				+1.5
1,440,682	+				+0.9
1,440,723	+				+0.9
1,440,723	+				+0.0
1,440,724	-				-0.1
1,440,724	-				-0.2
1,440,757	+				+1.5
1,440,757	+				-0.2
1,440,757	+				+0.0
1,440,758	-				-1.8
1,440,768	+				-0.1
1,440,768	+				+0.6
1,440,768	+				+0.7
1,440,768	+				-1.1
1,440,769	-				+0.3
1,440,769	-				-1.8
1,440,778	-				-1.9
1,440,778	-				-0.9
1,440,895	-				+0.5
1,440,943	+				+0.8
1,440,943	+				+1.0
1,440,943	+				-1.0
1,440,943	+				+0.3
1,440,943	+				-1.5
1,440,944	-				+0.1
1,440,944	-				-1.4
1,440,967	+				+0.0
1,440,967	+				-2.4
1,440,968	-				-0.0
1,440,968	-				+0.7
1,440,968	-				+0.3
1,440,980	+				-0.1
1,440,980	+				-0.5
1,440,980	+				-1.3
1,441,011	+				+0.2
1,441,047	+				+0.1
1,441,246	+		Sama_1180	0.17	+0.2
1,441,247	-		Sama_1180	0.17	+1.3
1,441,256	+		Sama_1180	0.17	+0.0
1,441,257	-		Sama_1180	0.17	-1.7
1,441,257	-		Sama_1180	0.17	-0.9
1,441,257	-		Sama_1180	0.17	+0.5
1,441,324	+		Sama_1180	0.19	-0.6
1,441,324	+		Sama_1180	0.19	-0.5
1,441,324	+		Sama_1180	0.19	-0.5
1,441,376	-		Sama_1180	0.21	+1.5
1,441,418	-		Sama_1180	0.23	-1.5
1,441,442	+		Sama_1180	0.24	-0.3
1,441,442	+		Sama_1180	0.24	-0.5
1,441,442	+		Sama_1180	0.24	+0.0
1,441,443	-		Sama_1180	0.24	+0.2
1,441,443	-		Sama_1180	0.24	+1.1
1,441,443	-		Sama_1180	0.24	-0.1
1,441,443	-		Sama_1180	0.24	+0.5
1,441,443	-		Sama_1180	0.24	-1.2
1,441,443	-		Sama_1180	0.24	-0.2
1,441,443	-		Sama_1180	0.24	-0.9
1,441,443	-		Sama_1180	0.24	+0.1
1,441,443	-		Sama_1180	0.24	+1.0
1,441,443	-		Sama_1180	0.24	-0.8
1,441,443	-		Sama_1180	0.24	-1.6
1,441,444	+		Sama_1180	0.24	+0.3
1,441,444	+		Sama_1180	0.24	-0.0
1,441,444	+		Sama_1180	0.24	-0.6
1,441,444	+		Sama_1180	0.24	-0.3
1,441,444	+		Sama_1180	0.24	-0.7