Strain Fitness in Shewanella amazonensis SB2B around Sama_1160

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,413,937	+		Sama_1159	0.53	+0.3
1,414,028	+		Sama_1159	0.58	+0.3
1,414,029	-		Sama_1159	0.58	-0.2
1,414,046	+		Sama_1159	0.59	-0.2
1,414,119	+		Sama_1159	0.63	+0.0
1,414,120	-		Sama_1159	0.63	-0.8
1,414,120	-		Sama_1159	0.63	-1.2
1,414,129	+		Sama_1159	0.63	+0.9
1,414,246	+		Sama_1159	0.69	-0.7
1,414,263	+		Sama_1159	0.70	+0.7
1,414,263	+		Sama_1159	0.70	-0.9
1,414,264	-		Sama_1159	0.70	+1.0
1,414,264	-		Sama_1159	0.70	+0.1
1,414,277	+		Sama_1159	0.71	-0.5
1,414,501	+		Sama_1159	0.82	-1.6
1,414,501	+		Sama_1159	0.82	-1.3
1,414,502	-		Sama_1159	0.82	-2.1
1,414,502	-		Sama_1159	0.82	-0.5
1,414,502	-		Sama_1159	0.82	-2.7
1,414,564	+		Sama_1159	0.86	-0.8
1,414,564	+		Sama_1159	0.86	-0.7
1,414,565	-		Sama_1159	0.86	-0.7
1,414,659	-				-0.1
1,414,794	+				-0.1
1,414,968	+				-1.7
1,414,968	+				+1.3
1,414,969	-				+0.5
1,414,969	-				+0.4
1,415,005	+				-0.2
1,415,005	+				-1.8
1,415,006	-				+1.2
1,415,015	+		Sama_1160	0.10	-0.3
1,415,055	+		Sama_1160	0.14	-0.3
1,415,056	-		Sama_1160	0.14	+1.3
1,415,056	-		Sama_1160	0.14	+1.6
1,415,056	-		Sama_1160	0.14	+0.9
1,415,103	+		Sama_1160	0.18	-1.2
1,415,142	+		Sama_1160	0.21	+0.3
1,415,142	+		Sama_1160	0.21	-0.4
1,415,157	+		Sama_1160	0.23	+1.8
1,415,157	+		Sama_1160	0.23	+0.4
1,415,157	+		Sama_1160	0.23	+0.9
1,415,157	+		Sama_1160	0.23	-0.4
1,415,157	+		Sama_1160	0.23	+0.4
1,415,158	-		Sama_1160	0.23	-0.6
1,415,158	-		Sama_1160	0.23	-0.5
1,415,252	+		Sama_1160	0.31	+0.6
1,415,293	+		Sama_1160	0.35	+0.5
1,415,293	+		Sama_1160	0.35	+1.0
1,415,293	+		Sama_1160	0.35	+0.8
1,415,337	+		Sama_1160	0.39	-0.2
1,415,338	-		Sama_1160	0.39	-0.6
1,415,414	-		Sama_1160	0.46	-0.4
1,415,414	-		Sama_1160	0.46	+0.9
1,415,414	-		Sama_1160	0.46	-0.0
1,415,416	+		Sama_1160	0.46	-2.1
1,415,416	+		Sama_1160	0.46	-0.7
1,415,416	+		Sama_1160	0.46	+0.6
1,415,416	+		Sama_1160	0.46	+1.5
1,415,416	+		Sama_1160	0.46	+0.5
1,415,416	+		Sama_1160	0.46	-1.8
1,415,416	+		Sama_1160	0.46	-1.3
1,415,417	-		Sama_1160	0.46	+1.0
1,415,417	-		Sama_1160	0.46	-2.2
1,415,417	-		Sama_1160	0.46	+0.8
1,415,417	-		Sama_1160	0.46	+0.0
1,415,417	-		Sama_1160	0.46	-0.1
1,415,417	-		Sama_1160	0.46	-0.2
1,415,417	-		Sama_1160	0.46	+1.5
1,415,528	+		Sama_1160	0.56	+2.1
1,415,528	+		Sama_1160	0.56	-0.6
1,415,528	+		Sama_1160	0.56	-1.2
1,415,528	+		Sama_1160	0.56	-0.7
1,415,528	+		Sama_1160	0.56	+0.8
1,415,529	-		Sama_1160	0.56	-1.1
1,415,529	-		Sama_1160	0.56	-0.1
1,415,529	-		Sama_1160	0.56	-1.1
1,415,529	-		Sama_1160	0.56	-0.7
1,415,529	-		Sama_1160	0.56	+0.8
1,415,532	+		Sama_1160	0.56	+0.8
1,415,532	+		Sama_1160	0.56	+1.1
1,415,532	+		Sama_1160	0.56	+0.1
1,415,532	+		Sama_1160	0.56	+0.0
1,415,532	+		Sama_1160	0.56	-1.3
1,415,532	+		Sama_1160	0.56	-0.8
1,415,533	-		Sama_1160	0.56	-2.1
1,415,533	-		Sama_1160	0.56	+0.4
1,415,579	-		Sama_1160	0.60	-0.1
1,415,622	+		Sama_1160	0.64	+0.9
1,415,623	-		Sama_1160	0.64	-1.3
1,415,661	+		Sama_1160	0.67	-0.2
1,415,783	+		Sama_1160	0.78	-0.1
1,415,785	+		Sama_1160	0.78	-0.1
1,415,786	-		Sama_1160	0.79	+1.2
1,415,786	-		Sama_1160	0.79	-0.6
1,415,815	-		Sama_1160	0.81	+0.0
1,415,874	-		Sama_1160	0.86	-0.0
1,415,897	+		Sama_1160	0.88	+0.4
1,415,898	-		Sama_1160	0.89	+0.8
1,415,898	-		Sama_1160	0.89	-0.5
1,415,951	+				-0.5
1,415,951	+				-0.8
1,415,952	-				-1.7
1,415,952	-				-1.7
1,415,952	-				+0.8
1,416,040	-				-0.5
1,416,047	+				-0.2
1,416,048	-				+0.5
1,416,052	-				+0.6
1,416,052	-				+0.2
1,416,063	+				-0.1
1,416,068	+				+0.5
1,416,069	-				-0.7
1,416,072	+				+0.8
1,416,072	+				+0.2
1,416,073	-				+1.7
1,416,138	-				-0.7
1,416,138	-				-0.3
1,416,149	+				+1.1
1,416,149	+				-0.7
1,416,157	-				+0.2