Strain Fitness in Shewanella amazonensis SB2B around Sama_0864

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,053,360	-				-0.0
1,053,360	-				+0.4
1,053,360	-				+0.7
1,053,372	+				-0.4
1,053,372	+				-0.4
1,053,563	+				+0.7
1,053,571	+				+0.6
1,053,607	+				-0.0
1,053,607	+				-0.9
1,053,622	+				+0.1
1,053,707	+				-0.1
1,053,707	+				+0.2
1,053,708	-				-1.2
1,053,717	+				-0.4
1,053,717	+				-0.8
1,053,721	+				+1.5
1,054,252	+				+1.0
1,054,286	+				+0.2
1,054,287	-				+0.3
1,054,287	-				+0.6
1,054,303	-				+0.9
1,054,315	-				-1.2
1,054,414	+				-0.8
1,054,414	+				+0.1
1,054,414	+				+1.0
1,054,414	+				+0.1
1,054,414	+				-0.0
1,054,414	+				-0.9
1,054,414	+				-0.2
1,054,414	+				+0.5
1,054,414	+				-0.0
1,054,414	+				-0.4
1,054,415	-				-0.0
1,054,415	-				-0.4
1,054,415	-				-1.3
1,054,415	-				+1.2
1,054,415	-				+0.2
1,054,415	-				-1.0
1,054,415	-				+0.5
1,054,415	-				-1.4
1,054,415	-				+0.8
1,054,415	-				+0.8
1,054,416	+				+1.0
1,054,542	+		Sama_0864	0.11	+0.2
1,054,543	-		Sama_0864	0.11	+0.2
1,054,650	-		Sama_0864	0.16	+1.6
1,054,660	-		Sama_0864	0.16	-0.6
1,054,660	-		Sama_0864	0.16	+1.6
1,054,660	-		Sama_0864	0.16	+0.5
1,054,692	+		Sama_0864	0.18	-1.1
1,055,030	+		Sama_0864	0.33	+0.3
1,055,059	+		Sama_0864	0.34	+0.3
1,055,060	-		Sama_0864	0.34	+0.1
1,055,060	-		Sama_0864	0.34	+1.0
1,055,155	+		Sama_0864	0.39	+0.6
1,055,155	+		Sama_0864	0.39	-0.3
1,055,155	+		Sama_0864	0.39	+0.0
1,055,155	+		Sama_0864	0.39	+2.3
1,055,156	-		Sama_0864	0.39	+0.3
1,055,156	-		Sama_0864	0.39	+1.6
1,055,201	+		Sama_0864	0.41	-2.0
1,055,201	+		Sama_0864	0.41	-0.5
1,055,202	-		Sama_0864	0.41	+0.4
1,055,202	-		Sama_0864	0.41	-1.3
1,055,247	+		Sama_0864	0.43	-0.2
1,055,324	+		Sama_0864	0.46	+0.4
1,055,346	+		Sama_0864	0.47	+0.2
1,055,384	+		Sama_0864	0.49	-0.5
1,055,384	+		Sama_0864	0.49	-0.0
1,055,385	-		Sama_0864	0.49	-0.8
1,055,430	+		Sama_0864	0.51	+0.7
1,055,431	-		Sama_0864	0.51	-1.8
1,055,445	-		Sama_0864	0.51	-1.0
1,055,469	-		Sama_0864	0.53	-0.1
1,055,469	-		Sama_0864	0.53	-1.0
1,055,514	+		Sama_0864	0.55	+0.1
1,055,592	+		Sama_0864	0.58	+1.9
1,055,593	-		Sama_0864	0.58	-2.8
1,055,593	-		Sama_0864	0.58	-0.2
1,055,593	-		Sama_0864	0.58	-2.1
1,055,593	-		Sama_0864	0.58	+0.2
1,055,593	-		Sama_0864	0.58	-0.3
1,055,594	+		Sama_0864	0.58	+1.0
1,055,594	+		Sama_0864	0.58	-0.6
1,055,594	+		Sama_0864	0.58	+0.1
1,055,594	+		Sama_0864	0.58	+0.3
1,055,594	+		Sama_0864	0.58	+0.4
1,055,594	+		Sama_0864	0.58	+0.5
1,055,594	+		Sama_0864	0.58	-0.5
1,055,594	+		Sama_0864	0.58	+0.9
1,055,594	+		Sama_0864	0.58	-1.2
1,055,594	+		Sama_0864	0.58	+0.2
1,055,595	-		Sama_0864	0.58	-0.2
1,055,595	-		Sama_0864	0.58	+0.2
1,055,595	-		Sama_0864	0.58	+0.3
1,055,595	-		Sama_0864	0.58	-0.2
1,055,595	-		Sama_0864	0.58	-0.5
1,055,595	-		Sama_0864	0.58	+0.2
1,055,595	-		Sama_0864	0.58	+0.7
1,055,595	-		Sama_0864	0.58	+0.5
1,055,595	-		Sama_0864	0.58	-1.1
1,055,595	-		Sama_0864	0.58	+0.2
1,055,595	-		Sama_0864	0.58	+0.1
1,055,595	-		Sama_0864	0.58	-0.9
1,055,595	-		Sama_0864	0.58	+0.3
1,055,595	-		Sama_0864	0.58	+0.9
1,055,602	+		Sama_0864	0.59	-0.4
1,055,602	+		Sama_0864	0.59	-0.1
1,055,603	-		Sama_0864	0.59	+0.5
1,055,603	-		Sama_0864	0.59	-0.7
1,055,603	-		Sama_0864	0.59	-1.8
1,055,669	+		Sama_0864	0.62	+1.2
1,055,670	-		Sama_0864	0.62	+0.8
1,055,671	+		Sama_0864	0.62	+0.1
1,055,691	+		Sama_0864	0.63	-1.1
1,055,691	+		Sama_0864	0.63	-0.8
1,055,691	+		Sama_0864	0.63	+1.2
1,055,692	-		Sama_0864	0.63	-1.1
1,055,692	-		Sama_0864	0.63	+0.7
1,055,692	-		Sama_0864	0.63	-0.6
1,055,692	-		Sama_0864	0.63	-0.6
1,055,729	+		Sama_0864	0.64	+1.0
1,055,730	-		Sama_0864	0.64	+0.4
1,055,730	-		Sama_0864	0.64	+0.3
1,055,737	+		Sama_0864	0.65	+0.6
1,055,738	-		Sama_0864	0.65	-0.6
1,055,805	+		Sama_0864	0.68	+0.2
1,055,906	+		Sama_0864	0.72	+1.2
1,055,906	+		Sama_0864	0.72	+0.0
1,055,906	+		Sama_0864	0.72	+0.2
1,055,906	+		Sama_0864	0.72	-0.4
1,055,906	+		Sama_0864	0.72	+1.4
1,055,906	+		Sama_0864	0.72	+0.6
1,055,907	-		Sama_0864	0.72	-0.4
1,055,907	-		Sama_0864	0.72	+0.8
1,055,907	-		Sama_0864	0.72	-2.2
1,055,907	-		Sama_0864	0.72	+0.9
1,055,907	-		Sama_0864	0.72	+1.1
1,055,907	-		Sama_0864	0.72	+0.2
1,055,907	-		Sama_0864	0.72	-1.1
1,055,961	+		Sama_0864	0.75	-0.8
1,055,961	+		Sama_0864	0.75	+0.6
1,055,962	-		Sama_0864	0.75	-0.4
1,055,962	-		Sama_0864	0.75	-0.5
1,055,962	-		Sama_0864	0.75	-0.8
1,055,984	+		Sama_0864	0.76	+0.3
1,055,984	+		Sama_0864	0.76	-0.2
1,055,984	+		Sama_0864	0.76	+0.8
1,055,984	+		Sama_0864	0.76	-0.8
1,055,985	-		Sama_0864	0.76	-0.2
1,055,985	-		Sama_0864	0.76	-0.6
1,055,985	-		Sama_0864	0.76	+0.3
1,055,985	-		Sama_0864	0.76	-1.2
1,055,985	-		Sama_0864	0.76	+1.0
1,056,002	-		Sama_0864	0.76	-0.4
1,056,097	+		Sama_0864	0.81	+0.6
1,056,163	+		Sama_0864	0.84	-2.6
1,056,164	-		Sama_0864	0.84	+1.6
1,056,164	-		Sama_0864	0.84	+0.4
1,056,202	-		Sama_0864	0.85	-1.0
1,056,208	+		Sama_0864	0.86	+0.2
1,056,208	+		Sama_0864	0.86	-0.2
1,056,208	+		Sama_0864	0.86	-0.5
1,056,208	+		Sama_0864	0.86	+0.0
1,056,208	+		Sama_0864	0.86	+0.9
1,056,208	+		Sama_0864	0.86	-1.1
1,056,209	-		Sama_0864	0.86	-2.6
1,056,217	+		Sama_0864	0.86	+0.3
1,056,217	+		Sama_0864	0.86	-0.1
1,056,218	-		Sama_0864	0.86	-0.3
1,056,273	+		Sama_0864	0.89	-0.2
1,056,273	+		Sama_0864	0.89	-0.8
1,056,274	-		Sama_0864	0.89	-0.5
1,056,274	-		Sama_0864	0.89	-2.1
1,056,346	+				-0.9
1,056,347	-				+0.5
1,056,386	+				-0.8
1,056,386	+				-0.1
1,056,387	-				+0.2
1,056,391	+				-1.2
1,056,490	+				-1.6
1,056,491	-				-1.0
1,056,526	+				+0.8
1,056,531	+				-2.6
1,056,531	+				-0.8
1,056,531	+				+0.4
1,056,532	-				+1.3
1,056,532	-				+1.6
1,056,532	-				-0.7
1,056,532	-				-0.8
1,056,532	-				-0.4
1,056,554	+				-0.8
1,056,554	+				+0.2
1,056,554	+				-2.1
1,056,555	-				-0.4
1,056,555	-				+1.0
1,056,589	+				+1.2
1,056,589	+				+1.9
1,056,604	+				-0.2
1,056,604	+				-0.2
1,056,604	+				+0.3
1,056,604	+				-1.8
1,056,605	-				-0.2
1,056,605	-				+2.2
1,056,673	+				+0.1
1,056,674	-				-0.5
1,056,692	-				-0.6
1,056,692	-				-0.6
1,056,708	+		Sama_0865	0.11	+0.1
1,056,708	+		Sama_0865	0.11	-0.9
1,056,708	+		Sama_0865	0.11	-1.4
1,056,708	+		Sama_0865	0.11	-1.5
1,056,708	+		Sama_0865	0.11	-0.8
1,056,708	+		Sama_0865	0.11	-0.8
1,056,708	+		Sama_0865	0.11	-0.3
1,056,709	-		Sama_0865	0.11	+0.7
1,056,758	+		Sama_0865	0.17	-1.0
1,056,758	+		Sama_0865	0.17	+0.8
1,056,759	-		Sama_0865	0.17	-0.8
1,056,787	+		Sama_0865	0.21	+0.7
1,056,788	-		Sama_0865	0.21	-0.4
1,056,827	+		Sama_0865	0.26	-1.6
1,056,828	-		Sama_0865	0.26	-1.4
1,056,828	-		Sama_0865	0.26	-2.0
1,056,828	-		Sama_0865	0.26	-1.8
1,056,828	-		Sama_0865	0.26	-0.4
1,056,828	-		Sama_0865	0.26	-0.4
1,056,830	+		Sama_0865	0.26	-1.1
1,056,830	+		Sama_0865	0.26	-1.8
1,056,848	+		Sama_0865	0.29	-0.8
1,056,848	+		Sama_0865	0.29	-0.7
1,056,849	-		Sama_0865	0.29	+0.7
1,056,853	+		Sama_0865	0.29	-0.7
1,056,871	+		Sama_0865	0.32	-1.0
1,057,024	+		Sama_0865	0.52	-0.3
1,057,024	+		Sama_0865	0.52	+0.8
1,057,025	-		Sama_0865	0.52	+0.8
1,057,025	-		Sama_0865	0.52	-2.3
1,057,029	-		Sama_0865	0.52	-1.7
1,057,051	+		Sama_0865	0.55	+0.1
1,057,052	-		Sama_0865	0.55	-0.4
1,057,052	-		Sama_0865	0.55	-1.9
1,057,107	+		Sama_0865	0.62	-0.0
1,057,107	+		Sama_0865	0.62	+1.0
1,057,108	-		Sama_0865	0.63	-0.2
1,057,108	-		Sama_0865	0.63	-1.2
1,057,108	-		Sama_0865	0.63	-0.9
1,057,108	-		Sama_0865	0.63	-1.6
1,057,108	-		Sama_0865	0.63	-0.2
1,057,163	+		Sama_0865	0.70	+0.3
1,057,163	+		Sama_0865	0.70	-2.8
1,057,164	-		Sama_0865	0.70	-0.4
1,057,188	+		Sama_0865	0.73	-0.0
1,057,188	+		Sama_0865	0.73	-1.0
1,057,189	-		Sama_0865	0.73	-0.8
1,057,189	-		Sama_0865	0.73	-0.6
1,057,189	-		Sama_0865	0.73	-1.6
1,057,230	-		Sama_0865	0.79	-0.2
1,057,239	+		Sama_0865	0.80	-1.2
1,057,239	+		Sama_0865	0.80	-0.5
1,057,245	+		Sama_0865	0.80	-0.8
1,057,245	+		Sama_0865	0.80	-0.7
1,057,245	+		Sama_0865	0.80	-0.9
1,057,246	-		Sama_0865	0.81	-0.3
1,057,246	-		Sama_0865	0.81	-1.6
1,057,261	+		Sama_0865	0.83	-0.8
1,057,261	+		Sama_0865	0.83	-0.4
1,057,261	+		Sama_0865	0.83	-0.9
1,057,262	-		Sama_0865	0.83	+0.4
1,057,262	-		Sama_0865	0.83	-0.9
1,057,262	-		Sama_0865	0.83	-0.4
1,057,262	-		Sama_0865	0.83	-1.0
1,057,267	+		Sama_0865	0.83	-1.6
1,057,267	+		Sama_0865	0.83	-1.3
1,057,267	+		Sama_0865	0.83	-1.5
1,057,268	-		Sama_0865	0.83	+0.2
1,057,268	-		Sama_0865	0.83	-1.6
1,057,268	-		Sama_0865	0.83	-0.3
1,057,268	-		Sama_0865	0.83	-1.3
1,057,268	-		Sama_0865	0.83	+1.0
1,057,268	-		Sama_0865	0.83	-1.8
1,057,274	+		Sama_0865	0.84	-1.2
1,057,407	+				+0.0
1,057,457	+				+0.0
1,057,457	+				-1.2
1,057,458	-				-0.9
1,057,458	+				-0.6
1,057,528	+		Sama_0866	0.12	+0.2