Strain Fitness in Shewanella amazonensis SB2B around Sama_0842

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,026,581	-		Sama_0841	0.49	-1.5
1,026,581	-		Sama_0841	0.49	-0.1
1,026,586	+		Sama_0841	0.50	-1.0
1,026,586	+		Sama_0841	0.50	+0.2
1,026,612	-		Sama_0841	0.51	-1.2
1,026,614	+		Sama_0841	0.51	-1.3
1,026,614	+		Sama_0841	0.51	-0.4
1,026,661	+		Sama_0841	0.54	-1.9
1,026,662	-		Sama_0841	0.54	+0.4
1,026,662	-		Sama_0841	0.54	-0.6
1,026,715	-		Sama_0841	0.57	-0.9
1,026,754	-		Sama_0841	0.59	+0.6
1,026,754	-		Sama_0841	0.59	-0.6
1,026,773	+		Sama_0841	0.60	-0.3
1,026,817	+		Sama_0841	0.63	-3.3
1,026,828	+		Sama_0841	0.64	-1.4
1,026,828	+		Sama_0841	0.64	-0.7
1,026,829	-		Sama_0841	0.64	+1.1
1,026,864	-		Sama_0841	0.66	-1.0
1,026,864	-		Sama_0841	0.66	-1.6
1,026,869	+		Sama_0841	0.66	-0.5
1,026,870	-		Sama_0841	0.66	-0.6
1,026,870	-		Sama_0841	0.66	+0.5
1,026,870	-		Sama_0841	0.66	+0.0
1,026,870	-		Sama_0841	0.66	-1.2
1,026,870	-		Sama_0841	0.66	+0.0
1,026,870	-		Sama_0841	0.66	-1.0
1,026,918	-		Sama_0841	0.69	+0.1
1,026,946	+		Sama_0841	0.71	+1.3
1,026,946	+		Sama_0841	0.71	-0.1
1,026,946	+		Sama_0841	0.71	-0.4
1,026,946	+		Sama_0841	0.71	-1.2
1,026,946	+		Sama_0841	0.71	+0.0
1,026,947	-		Sama_0841	0.71	-1.4
1,026,947	-		Sama_0841	0.71	-0.2
1,026,947	-		Sama_0841	0.71	+0.9
1,026,947	-		Sama_0841	0.71	-1.7
1,026,947	-		Sama_0841	0.71	-1.2
1,026,949	+		Sama_0841	0.71	-1.0
1,027,111	+		Sama_0841	0.80	-1.2
1,027,128	+		Sama_0841	0.81	-0.1
1,027,128	+		Sama_0841	0.81	+1.0
1,027,128	+		Sama_0841	0.81	+0.9
1,027,129	-		Sama_0841	0.81	-1.3
1,027,129	-		Sama_0841	0.81	-2.1
1,027,129	-		Sama_0841	0.81	-0.7
1,027,129	-		Sama_0841	0.81	-0.7
1,027,224	+		Sama_0841	0.87	-0.6
1,027,224	+		Sama_0841	0.87	-1.1
1,027,225	-		Sama_0841	0.87	-0.5
1,027,225	-		Sama_0841	0.87	-0.6
1,027,225	-		Sama_0841	0.87	+0.9
1,027,225	-		Sama_0841	0.87	+1.2
1,027,246	+		Sama_0841	0.88	+0.2
1,027,246	+		Sama_0841	0.88	-0.2
1,027,246	+		Sama_0841	0.88	-1.2
1,027,246	+		Sama_0841	0.88	-0.4
1,027,246	+		Sama_0841	0.88	-0.2
1,027,246	+		Sama_0841	0.88	-0.4
1,027,247	-		Sama_0841	0.88	+0.4
1,027,247	-		Sama_0841	0.88	+0.9
1,027,247	-		Sama_0841	0.88	-1.2
1,027,247	-		Sama_0841	0.88	-1.1
1,027,247	-		Sama_0841	0.88	+0.6
1,027,247	-		Sama_0841	0.88	-0.4
1,027,263	+		Sama_0841	0.89	-1.3
1,027,263	+		Sama_0841	0.89	+0.4
1,027,263	+		Sama_0841	0.89	+0.8
1,027,287	-				+1.0
1,027,300	+				-1.0
1,027,301	-				-1.0
1,027,402	-				-0.3
1,027,443	-				-0.5
1,027,443	-				-0.3
1,027,443	-				+0.4
1,027,443	-				-0.9
1,027,465	+				-0.0
1,027,465	+				+0.6
1,027,466	-				+0.7
1,027,466	-				-1.1
1,027,466	-				+1.0
1,027,496	+				+0.1
1,027,496	+				-1.3
1,027,496	+				+1.2
1,027,496	+				-0.2
1,027,496	+				+1.5
1,027,496	+				+0.6
1,027,496	+				-2.2
1,027,496	+				+0.0
1,027,496	+				-3.0
1,027,496	+				-0.7
1,027,496	+				-1.0
1,027,497	-				-1.4
1,027,497	-				-1.0
1,027,497	-				-3.0
1,027,497	-				-1.7
1,027,497	-				-1.6
1,027,497	-				+1.0
1,027,504	+				-0.3
1,027,504	+				-0.4
1,027,505	-				-1.5
1,027,541	-				-0.3
1,027,543	+				-2.3
1,027,543	+				-1.7
1,027,543	+				+0.1
1,027,543	+				-2.9
1,027,544	-				-1.7
1,027,544	-				-2.0
1,027,544	-				-2.4
1,027,570	-				-1.6
1,027,629	+				-0.1
1,027,673	+		Sama_0842	0.14	+0.0
1,027,673	+		Sama_0842	0.14	-0.6
1,027,674	-		Sama_0842	0.14	-0.6
1,027,674	-		Sama_0842	0.14	-1.5
1,027,674	-		Sama_0842	0.14	-1.5
1,027,674	-		Sama_0842	0.14	-1.5
1,027,674	-		Sama_0842	0.14	-1.7
1,027,674	-		Sama_0842	0.14	-0.4
1,027,677	+		Sama_0842	0.15	-1.3
1,027,678	-		Sama_0842	0.15	-0.6
1,027,678	-		Sama_0842	0.15	-1.6
1,027,928	+		Sama_0842	0.46	-0.4
1,028,042	-		Sama_0842	0.60	-0.2
1,028,197	+		Sama_0842	0.79	+1.0
1,028,197	+		Sama_0842	0.79	-3.4
1,028,197	+		Sama_0842	0.79	-1.2
1,028,197	+		Sama_0842	0.79	-0.2
1,028,197	+		Sama_0842	0.79	-0.3
1,028,197	+		Sama_0842	0.79	-0.7
1,028,197	+		Sama_0842	0.79	-2.0
1,028,198	-		Sama_0842	0.79	-0.3
1,028,198	-		Sama_0842	0.79	-0.4
1,028,198	-		Sama_0842	0.79	-1.7
1,028,198	-		Sama_0842	0.79	-0.4
1,028,198	-		Sama_0842	0.79	-1.1
1,028,217	+		Sama_0842	0.82	-2.2
1,028,217	+		Sama_0842	0.82	-2.3
1,028,217	+		Sama_0842	0.82	-3.4
1,028,218	-		Sama_0842	0.82	-0.8
1,028,218	-		Sama_0842	0.82	-1.4
1,028,219	+		Sama_0842	0.82	-1.4
1,028,219	+		Sama_0842	0.82	-0.8
1,028,219	+		Sama_0842	0.82	-1.3
1,028,220	-		Sama_0842	0.82	-0.7
1,028,220	-		Sama_0842	0.82	+0.0
1,028,293	+				+0.2
1,028,293	+				+0.2
1,028,294	-				-1.6
1,028,294	-				-0.1
1,028,314	+				-0.2
1,028,704	+				+0.3
1,028,705	-				-0.4
1,028,724	+				-0.3
1,028,725	-				-1.0
1,028,767	+				-0.4
1,028,791	-				-0.6
1,028,791	-				-0.4
1,028,791	-				-2.6
1,028,839	+		Sama_0844	0.11	+1.6
1,028,839	+		Sama_0844	0.11	+0.1
1,028,840	-		Sama_0844	0.11	+0.5
1,028,851	-		Sama_0844	0.13	-0.7
1,028,855	-		Sama_0844	0.14	-0.1
1,028,855	-		Sama_0844	0.14	+1.6
1,028,855	-		Sama_0844	0.14	+0.2
1,028,906	+		Sama_0844	0.26	-0.2
1,028,907	-		Sama_0844	0.27	-1.7
1,028,907	-		Sama_0844	0.27	-1.0
1,028,907	-		Sama_0844	0.27	+1.2
1,028,907	-		Sama_0844	0.27	+0.6
1,029,027	-		Sama_0844	0.55	-0.7
1,029,147	+		Sama_0844	0.83	+1.1
1,029,148	-		Sama_0844	0.84	+0.1
1,029,149	+		Sama_0844	0.84	-0.1
1,029,149	+		Sama_0844	0.84	-0.7
1,029,150	-		Sama_0844	0.84	+0.5
1,029,150	-		Sama_0844	0.84	+0.0
1,029,150	-		Sama_0844	0.84	-0.1
1,029,166	+		Sama_0844	0.88	-0.3
1,029,200	-				-3.7
1,029,228	-				+0.4