Strain Fitness in Shewanella amazonensis SB2B around Sama_0836

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,018,977	-		Sama_0835	0.46	-0.7
1,018,977	-		Sama_0835	0.46	-1.5
1,018,977	-		Sama_0835	0.46	-1.4
1,019,016	+		Sama_0835	0.48	-0.3
1,019,016	+		Sama_0835	0.48	-0.2
1,019,016	+		Sama_0835	0.48	+0.0
1,019,016	+		Sama_0835	0.48	-1.7
1,019,024	+		Sama_0835	0.48	+1.6
1,019,024	+		Sama_0835	0.48	+2.6
1,019,024	+		Sama_0835	0.48	+0.6
1,019,025	-		Sama_0835	0.48	+0.6
1,019,029	-		Sama_0835	0.49	-1.0
1,019,033	+		Sama_0835	0.49	+0.6
1,019,033	+		Sama_0835	0.49	+1.1
1,019,033	+		Sama_0835	0.49	-0.3
1,019,033	+		Sama_0835	0.49	+1.0
1,019,033	+		Sama_0835	0.49	-0.4
1,019,156	+		Sama_0835	0.55	-0.3
1,019,156	+		Sama_0835	0.55	+0.2
1,019,246	+		Sama_0835	0.60	+1.1
1,019,246	+		Sama_0835	0.60	+1.4
1,019,258	+		Sama_0835	0.61	-1.2
1,019,258	+		Sama_0835	0.61	-0.9
1,019,267	-		Sama_0835	0.62	-0.1
1,019,526	-		Sama_0835	0.76	+0.3
1,019,535	-		Sama_0835	0.76	+1.3
1,019,540	+		Sama_0835	0.76	-0.8
1,019,540	+		Sama_0835	0.76	+1.2
1,019,540	+		Sama_0835	0.76	-0.6
1,019,540	+		Sama_0835	0.76	+0.9
1,019,541	-		Sama_0835	0.76	-1.4
1,019,541	-		Sama_0835	0.76	-0.1
1,019,541	-		Sama_0835	0.76	-0.3
1,019,541	-		Sama_0835	0.76	+1.6
1,019,541	-		Sama_0835	0.76	+0.1
1,019,545	-		Sama_0835	0.77	+0.6
1,019,559	+		Sama_0835	0.77	+0.7
1,019,559	+		Sama_0835	0.77	-1.4
1,019,559	+		Sama_0835	0.77	-0.1
1,019,560	-		Sama_0835	0.77	+0.0
1,019,560	-		Sama_0835	0.77	+0.6
1,019,560	-		Sama_0835	0.77	+0.2
1,019,560	-		Sama_0835	0.77	-0.3
1,019,721	+		Sama_0835	0.86	-0.9
1,019,721	+		Sama_0835	0.86	-0.3
1,019,721	+		Sama_0835	0.86	+1.0
1,019,831	+				+0.4
1,019,891	+				-0.9
1,019,928	+				-0.4
1,019,928	+				-0.1
1,019,928	+				+0.5
1,019,971	-				+0.4
1,019,971	-				+0.9
1,019,971	-				+0.9
1,019,971	-				+0.0
1,019,980	+				+0.5
1,019,980	+				+0.4
1,019,980	+				+0.6
1,019,981	-				+0.6
1,020,007	+				-0.5
1,020,008	-				-0.4
1,020,008	-				+0.6
1,020,008	-				+1.1
1,020,056	+				+0.9
1,020,056	+				+0.1
1,020,057	-				-1.5
1,020,145	+		Sama_0836	0.15	+0.0
1,020,146	-		Sama_0836	0.15	+0.0
1,020,192	+		Sama_0836	0.19	+0.1
1,020,241	+		Sama_0836	0.24	+0.4
1,020,241	+		Sama_0836	0.24	+0.6
1,020,241	+		Sama_0836	0.24	-1.4
1,020,241	+		Sama_0836	0.24	+1.3
1,020,242	-		Sama_0836	0.24	-0.2
1,020,242	-		Sama_0836	0.24	-1.1
1,020,304	-		Sama_0836	0.30	-0.2
1,020,396	+		Sama_0836	0.38	-0.6
1,020,467	+		Sama_0836	0.44	+1.1
1,020,467	+		Sama_0836	0.44	-1.0
1,020,468	-		Sama_0836	0.44	-0.3
1,020,468	-		Sama_0836	0.44	-0.5
1,020,736	+		Sama_0836	0.68	-0.2
1,020,736	+		Sama_0836	0.68	+0.6
1,020,736	+		Sama_0836	0.68	-0.3
1,020,736	+		Sama_0836	0.68	+0.5
1,020,737	-		Sama_0836	0.68	+0.6
1,020,741	+		Sama_0836	0.69	+0.2
1,020,741	+		Sama_0836	0.69	-0.5
1,020,741	+		Sama_0836	0.69	+1.2
1,020,742	-		Sama_0836	0.69	-0.2
1,020,742	-		Sama_0836	0.69	-0.2
1,020,796	+		Sama_0836	0.74	+1.1
1,020,843	+		Sama_0836	0.78	-0.0
1,020,870	-		Sama_0836	0.80	-0.1
1,020,870	-		Sama_0836	0.80	+0.7
1,020,916	+		Sama_0836	0.85	+0.6
1,020,917	-		Sama_0836	0.85	-0.5
1,020,917	-		Sama_0836	0.85	+0.8
1,020,917	-		Sama_0836	0.85	+0.3
1,020,917	-		Sama_0836	0.85	-0.7
1,020,932	+		Sama_0836	0.86	+1.1
1,020,932	+		Sama_0836	0.86	+1.1
1,020,933	-		Sama_0836	0.86	-1.0
1,020,933	-		Sama_0836	0.86	-1.4
1,020,933	-		Sama_0836	0.86	+0.1
1,020,933	-		Sama_0836	0.86	+2.3
1,020,933	-		Sama_0836	0.86	-0.3
1,020,982	-				+1.6
1,021,069	+				-0.4
1,021,070	-				+0.9
1,021,185	-				-0.4
1,021,220	+				-1.1
1,021,221	-				-0.6
1,021,221	-				-1.6
1,021,221	-				-1.4
1,021,221	-				-1.9
1,021,231	+				-0.7
1,021,232	-				-0.5
1,021,241	-				+0.4
1,021,241	-				-0.3
1,021,241	-				-1.0
1,021,244	+				-1.4
1,021,244	+				-1.6
1,021,244	+				-1.2
1,021,244	+				-1.6
1,021,244	+				+1.6
1,021,245	-				-1.9
1,021,245	-				-1.7
1,021,245	-				+0.6
1,021,245	-				-1.9
1,021,245	-				-0.7
1,021,245	-				-2.2
1,021,245	-				-1.3
1,021,245	-				+0.0
1,021,245	-				-3.3
1,021,245	-				-1.2
1,021,245	-				+1.6
1,021,245	-				-1.7
1,021,253	+				-2.2
1,021,253	+				+0.0
1,021,254	-				-0.3
1,021,254	-				+0.3
1,021,254	-				-2.1
1,021,297	-		Sama_0837	0.10	-0.6
1,021,414	+		Sama_0837	0.20	-1.6
1,021,414	+		Sama_0837	0.20	-1.5
1,021,414	+		Sama_0837	0.20	-1.0
1,021,414	+		Sama_0837	0.20	-0.3
1,021,415	-		Sama_0837	0.20	-0.4
1,021,415	-		Sama_0837	0.20	-1.7
1,021,415	-		Sama_0837	0.20	-2.1
1,021,415	-		Sama_0837	0.20	-0.6
1,021,415	-		Sama_0837	0.20	-1.4
1,021,525	-		Sama_0837	0.29	-2.0
1,021,525	-		Sama_0837	0.29	-0.4
1,021,525	-		Sama_0837	0.29	-1.9
1,021,525	-		Sama_0837	0.29	-1.0
1,021,525	-		Sama_0837	0.29	+2.2
1,021,568	+		Sama_0837	0.32	-1.1
1,021,568	+		Sama_0837	0.32	+0.8
1,021,568	+		Sama_0837	0.32	+0.0
1,021,568	+		Sama_0837	0.32	-1.0
1,021,569	-		Sama_0837	0.32	-1.9
1,021,569	-		Sama_0837	0.32	-0.4
1,021,569	-		Sama_0837	0.32	-1.1
1,021,569	-		Sama_0837	0.32	-0.4
1,021,584	+		Sama_0837	0.33	-0.7
1,021,584	+		Sama_0837	0.33	-0.6
1,021,585	-		Sama_0837	0.33	+0.3
1,021,585	-		Sama_0837	0.33	+1.3
1,021,586	+		Sama_0837	0.33	-0.9
1,021,586	+		Sama_0837	0.33	+0.6
1,021,586	+		Sama_0837	0.33	-0.9
1,021,586	+		Sama_0837	0.33	-1.1
1,021,586	+		Sama_0837	0.33	+0.4
1,021,587	-		Sama_0837	0.34	-2.6
1,021,587	-		Sama_0837	0.34	-0.5
1,021,627	-		Sama_0837	0.37	-1.3
1,021,726	-		Sama_0837	0.45	+0.0
1,021,726	-		Sama_0837	0.45	-0.6
1,021,763	+		Sama_0837	0.48	-1.9
1,021,763	+		Sama_0837	0.48	+0.2
1,021,764	-		Sama_0837	0.48	+0.6
1,021,764	-		Sama_0837	0.48	-0.9
1,021,854	+		Sama_0837	0.55	-0.4
1,021,863	+		Sama_0837	0.56	-1.3
1,021,882	+		Sama_0837	0.57	-1.7
1,021,882	+		Sama_0837	0.57	-1.0
1,021,882	+		Sama_0837	0.57	-1.5
1,021,882	+		Sama_0837	0.57	-1.2
1,021,883	-		Sama_0837	0.57	+1.9
1,021,883	-		Sama_0837	0.57	-0.7
1,021,883	-		Sama_0837	0.57	-2.7
1,021,883	-		Sama_0837	0.57	-2.4
1,021,883	-		Sama_0837	0.57	-1.7
1,021,883	-		Sama_0837	0.57	-1.1
1,021,915	+		Sama_0837	0.60	-1.1
1,021,915	+		Sama_0837	0.60	-0.2
1,021,929	+		Sama_0837	0.61	-1.4
1,021,962	+		Sama_0837	0.64	-1.4
1,021,995	+		Sama_0837	0.66	-2.5
1,022,045	-		Sama_0837	0.70	-2.8
1,022,070	+		Sama_0837	0.72	-2.2
1,022,071	-		Sama_0837	0.72	+0.6