Strain Fitness in Shewanella amazonensis SB2B around Sama_0829

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
1,012,574	-				-0.4
1,012,579	+				+0.1
1,012,579	+				-1.4
1,012,579	+				+0.9
1,012,580	-				+1.6
1,012,580	-				+2.9
1,012,592	+				-0.3
1,012,592	+				-0.7
1,012,592	+				+0.6
1,012,592	+				-0.2
1,012,593	-				+0.9
1,012,595	+				-1.7
1,012,595	+				-0.6
1,012,596	-				-0.8
1,012,609	+				+1.2
1,012,610	-				+0.6
1,012,695	-				-2.0
1,012,734	+		Sama_0828	0.11	-0.6
1,012,735	-		Sama_0828	0.11	-1.0
1,012,816	+		Sama_0828	0.25	-0.4
1,012,817	-		Sama_0828	0.25	+0.0
1,012,872	-		Sama_0828	0.35	-0.7
1,013,065	+		Sama_0828	0.68	-0.7
1,013,066	-		Sama_0828	0.68	-1.6
1,013,091	-		Sama_0828	0.72	-2.6
1,013,133	-		Sama_0828	0.79	-0.7
1,013,307	-				-1.0
1,013,307	-				+0.0
1,013,895	+				-1.4
1,013,895	+				-0.1
1,013,895	+				+0.4
1,013,895	+				+0.6
1,013,895	+				-0.9
1,013,895	+				+0.6
1,013,895	+				-0.5
1,013,895	+				-0.4
1,013,895	+				+1.0
1,013,895	+				-0.7
1,013,895	+				+1.5
1,013,895	+				+0.6
1,013,895	+				+1.9
1,013,896	-				-1.2
1,013,896	-				+0.2
1,013,896	-				+0.0
1,013,896	-				-0.4
1,013,896	-				+1.0
1,013,897	+				+0.2
1,013,897	+				-0.5
1,013,897	+				-1.0
1,013,897	+				+0.6
1,013,905	+				-0.4
1,013,905	+				-1.0
1,013,906	-				+0.3
1,013,912	+				-1.1
1,013,912	+				-1.6
1,013,915	+				+0.6
1,013,915	+				-1.0
1,013,916	-				+1.8
1,013,994	+		Sama_0830	0.22	-0.8
1,013,994	+		Sama_0830	0.22	-0.4
1,013,994	+		Sama_0830	0.22	-1.4
1,013,995	-		Sama_0830	0.22	-0.9
1,013,995	-		Sama_0830	0.22	-0.6
1,014,056	+		Sama_0830	0.34	-0.0
1,014,057	-		Sama_0830	0.35	-0.7
1,014,166	+		Sama_0830	0.56	-0.8
1,014,166	+		Sama_0830	0.56	-0.3
1,014,167	-		Sama_0830	0.56	-0.3
1,014,230	+		Sama_0830	0.69	+0.6
1,014,230	+		Sama_0830	0.69	-1.0
1,014,262	+		Sama_0830	0.75	-0.2
1,014,263	-		Sama_0830	0.75	+1.3
1,014,263	-		Sama_0830	0.75	-1.0
1,014,278	-		Sama_0830	0.78	+0.9
1,014,300	+		Sama_0830	0.83	+0.2
1,014,300	+		Sama_0830	0.83	+0.0
1,014,300	+		Sama_0830	0.83	-0.6
1,014,301	-		Sama_0830	0.83	-0.3
1,014,301	-		Sama_0830	0.83	+0.9
1,014,384	+				-1.3
1,014,384	+				-0.4
1,014,384	+				-0.6
1,014,384	+				+0.5
1,014,384	+				+0.6
1,014,387	+				-0.0
1,014,388	-				-0.3
1,014,395	+				+0.2
1,014,395	+				-0.8
1,014,395	+				+0.6
1,014,395	+				-1.7
1,014,395	+				-2.0
1,014,395	+				-0.6
1,014,395	+				-1.6
1,014,398	+				+0.0
1,014,399	-				-2.4
1,014,404	+				-0.4
1,014,419	+				-1.4
1,014,419	+				-3.9
1,014,419	+				-1.3
1,014,420	-				-1.2
1,014,420	-				-0.7
1,014,431	+				-0.2
1,014,746	-		Sama_0831	0.43	-2.2
1,014,755	+		Sama_0831	0.44	-0.5
1,014,764	+		Sama_0831	0.46	+0.2
1,014,764	+		Sama_0831	0.46	+0.6
1,014,822	+		Sama_0831	0.53	-1.2
1,014,822	+		Sama_0831	0.53	-0.1