Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt metH and Sama_0759 are separated by 374 nucleotides Sama_0759 and Sama_0760 are separated by 332 nucleotides
Sama_0758: metH - B12-dependent methionine synthase (RefSeq), at 938,190 to 941,930
metH
Sama_0759: Sama_0759 - alpha-ribazole-5'-phosphate phosphatase, putative (RefSeq), at 942,305 to 942,931
_0759
Sama_0760: Sama_0760 - iron-compound ABC transporter, ATP-binding protein, putative (RefSeq), at 943,264 to 944,079
_0760
Position (kb) 942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 941.416 kb on - strand, within metH at 941.436 kb on - strand, within metH at 941.512 kb on + strand, within metH at 941.513 kb on - strand, within metH at 941.513 kb on - strand, within metH at 941.583 kb on + strand at 941.612 kb on - strand at 941.612 kb on - strand at 941.640 kb on - strand at 941.681 kb on - strand at 941.681 kb on - strand at 941.681 kb on - strand at 941.703 kb on + strand at 941.703 kb on + strand at 941.703 kb on + strand at 941.703 kb on + strand at 941.704 kb on - strand at 941.704 kb on - strand at 941.704 kb on - strand at 941.704 kb on - strand at 941.722 kb on - strand at 941.722 kb on - strand at 941.745 kb on - strand at 941.840 kb on + strand at 941.841 kb on - strand at 941.841 kb on - strand at 941.931 kb on - strand at 941.969 kb on + strand at 941.974 kb on + strand at 941.974 kb on + strand at 942.041 kb on + strand at 942.042 kb on - strand at 942.050 kb on - strand at 942.059 kb on + strand at 942.121 kb on + strand at 942.122 kb on - strand at 942.122 kb on - strand at 942.144 kb on + strand at 942.144 kb on + strand at 942.177 kb on + strand at 942.178 kb on - strand at 942.192 kb on + strand at 942.192 kb on + strand at 942.192 kb on + strand at 942.226 kb on + strand at 942.226 kb on + strand at 942.227 kb on - strand at 942.240 kb on + strand at 942.240 kb on + strand at 942.240 kb on + strand at 942.241 kb on - strand at 942.241 kb on - strand at 942.418 kb on + strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.419 kb on - strand, within Sama_0759 at 942.439 kb on - strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.507 kb on + strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.508 kb on - strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.529 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.543 kb on + strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.544 kb on - strand, within Sama_0759 at 942.547 kb on + strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.548 kb on - strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.742 kb on + strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.743 kb on - strand, within Sama_0759 at 942.837 kb on - strand, within Sama_0759 at 942.935 kb on + strand at 942.945 kb on - strand at 942.988 kb on + strand at 942.989 kb on - strand at 943.006 kb on + strand at 943.007 kb on - strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.078 kb on + strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.079 kb on - strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.083 kb on + strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.084 kb on - strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.088 kb on + strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.089 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.141 kb on - strand at 943.162 kb on - strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.198 kb on + strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.199 kb on - strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.250 kb on + strand at 943.251 kb on - strand at 943.251 kb on - strand at 943.304 kb on + strand at 943.305 kb on - strand at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.360 kb on + strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.361 kb on - strand, within Sama_0760 at 943.422 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.445 kb on + strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.446 kb on - strand, within Sama_0760 at 943.464 kb on + strand, within Sama_0760 at 943.474 kb on + strand, within Sama_0760 at 943.475 kb on - strand, within Sama_0760 at 943.572 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.623 kb on + strand, within Sama_0760 at 943.624 kb on - strand, within Sama_0760 at 943.660 kb on + strand, within Sama_0760 at 943.749 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760 at 943.824 kb on + strand, within Sama_0760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 941,416 - metH Sama_0758 0.86 -0.0 941,436 - metH Sama_0758 0.87 -0.8 941,512 + metH Sama_0758 0.89 +0.2 941,513 - metH Sama_0758 0.89 -1.3 941,513 - metH Sama_0758 0.89 +0.6 941,583 + -0.4 941,612 - -0.2 941,612 - -0.3 941,640 - -0.1 941,681 - -0.7 941,681 - -2.0 941,681 - +0.8 941,703 + +0.2 941,703 + -0.8 941,703 + +0.1 941,703 + +0.4 941,704 - +0.5 941,704 - -0.1 941,704 - -0.6 941,704 - +0.3 941,722 - -0.3 941,722 - -0.7 941,745 - -0.1 941,840 + -1.6 941,841 - -0.2 941,841 - -0.8 941,931 - -1.2 941,969 + -0.3 941,974 + -2.5 941,974 + -2.5 942,041 + +0.4 942,042 - -0.6 942,050 - +0.6 942,059 + +0.6 942,121 + -0.4 942,122 - +1.3 942,122 - -2.2 942,144 + -1.5 942,144 + +0.0 942,177 + -1.0 942,178 - -0.1 942,192 + -1.1 942,192 + -1.0 942,192 + -1.2 942,226 + -1.8 942,226 + -0.7 942,227 - -0.4 942,240 + +0.6 942,240 + +0.2 942,240 + +0.0 942,241 - +0.0 942,241 - +0.0 942,418 + Sama_0759 0.18 -1.4 942,419 - Sama_0759 0.18 +0.0 942,419 - Sama_0759 0.18 -1.0 942,439 - Sama_0759 0.21 -0.0 942,507 + Sama_0759 0.32 +0.3 942,507 + Sama_0759 0.32 -0.5 942,507 + Sama_0759 0.32 -0.0 942,508 - Sama_0759 0.32 +0.3 942,508 - Sama_0759 0.32 -1.8 942,508 - Sama_0759 0.32 +1.6 942,529 + Sama_0759 0.36 +1.6 942,529 + Sama_0759 0.36 +0.1 942,543 + Sama_0759 0.38 +0.8 942,543 + Sama_0759 0.38 -1.5 942,543 + Sama_0759 0.38 -0.1 942,543 + Sama_0759 0.38 -0.8 942,543 + Sama_0759 0.38 -0.9 942,543 + Sama_0759 0.38 +0.6 942,543 + Sama_0759 0.38 +0.3 942,543 + Sama_0759 0.38 -1.8 942,543 + Sama_0759 0.38 -2.5 942,543 + Sama_0759 0.38 -0.3 942,543 + Sama_0759 0.38 -1.4 942,543 + Sama_0759 0.38 -0.9 942,543 + Sama_0759 0.38 -2.4 942,543 + Sama_0759 0.38 -1.8 942,543 + Sama_0759 0.38 -0.2 942,543 + Sama_0759 0.38 -1.4 942,543 + Sama_0759 0.38 -1.1 942,543 + Sama_0759 0.38 -0.6 942,544 - Sama_0759 0.38 -0.4 942,544 - Sama_0759 0.38 +0.9 942,544 - Sama_0759 0.38 -0.6 942,544 - Sama_0759 0.38 -2.4 942,544 - Sama_0759 0.38 +0.0 942,544 - Sama_0759 0.38 -0.6 942,544 - Sama_0759 0.38 +0.0 942,544 - Sama_0759 0.38 -0.5 942,544 - Sama_0759 0.38 +1.6 942,544 - Sama_0759 0.38 -0.4 942,544 - Sama_0759 0.38 -0.5 942,544 - Sama_0759 0.38 +0.9 942,544 - Sama_0759 0.38 +0.2 942,544 - Sama_0759 0.38 -1.1 942,544 - Sama_0759 0.38 +0.6 942,544 - Sama_0759 0.38 -1.0 942,544 - Sama_0759 0.38 +0.4 942,544 - Sama_0759 0.38 +0.7 942,544 - Sama_0759 0.38 +0.0 942,544 - Sama_0759 0.38 -0.8 942,547 + Sama_0759 0.39 +0.3 942,548 - Sama_0759 0.39 +0.1 942,548 - Sama_0759 0.39 -1.8 942,742 + Sama_0759 0.70 +0.5 942,742 + Sama_0759 0.70 -2.9 942,742 + Sama_0759 0.70 -0.5 942,743 - Sama_0759 0.70 +1.4 942,743 - Sama_0759 0.70 -0.6 942,837 - Sama_0759 0.85 -0.5 942,935 + -0.4 942,945 - +0.9 942,988 + -0.6 942,989 - +0.4 943,006 + +0.8 943,007 - +0.2 943,078 + +0.8 943,078 + -2.5 943,078 + +0.8 943,078 + -1.1 943,078 + -1.4 943,078 + -2.0 943,078 + -0.1 943,078 + +0.3 943,078 + -1.0 943,078 + +0.5 943,078 + +0.9 943,079 - +0.9 943,079 - -0.2 943,079 - +1.0 943,079 - -0.2 943,079 - -0.7 943,079 - +0.2 943,079 - +0.6 943,079 - -0.6 943,079 - -0.6 943,083 + -0.0 943,083 + +0.3 943,083 + +0.6 943,083 + +0.9 943,083 + -1.1 943,084 - +0.3 943,084 - -0.5 943,084 - +0.4 943,084 - +0.0 943,084 - +0.0 943,088 + +1.1 943,088 + -0.7 943,088 + +0.1 943,089 - +0.6 943,089 - +0.1 943,089 - +0.3 943,141 - +0.4 943,141 - +0.8 943,141 - +0.1 943,162 - +1.5 943,198 + +1.1 943,198 + +1.8 943,198 + +0.6 943,199 - +0.5 943,199 - -0.2 943,199 - -0.2 943,199 - -0.5 943,250 + -1.3 943,250 + -0.0 943,250 + +1.2 943,251 - -0.0 943,251 - -0.2 943,304 + -0.5 943,305 - -1.0 943,360 + Sama_0760 0.12 -2.0 943,360 + Sama_0760 0.12 -0.7 943,360 + Sama_0760 0.12 -0.1 943,361 - Sama_0760 0.12 -1.4 943,361 - Sama_0760 0.12 -0.1 943,422 + Sama_0760 0.19 -2.0 943,445 + Sama_0760 0.22 -0.3 943,445 + Sama_0760 0.22 +0.7 943,445 + Sama_0760 0.22 +0.9 943,445 + Sama_0760 0.22 +0.3 943,445 + Sama_0760 0.22 -0.2 943,445 + Sama_0760 0.22 +0.8 943,445 + Sama_0760 0.22 +0.2 943,446 - Sama_0760 0.22 +2.4 943,446 - Sama_0760 0.22 -0.2 943,464 + Sama_0760 0.25 -1.0 943,474 + Sama_0760 0.26 +1.0 943,475 - Sama_0760 0.26 +0.6 943,572 + Sama_0760 0.38 -0.7 943,623 + Sama_0760 0.44 -0.2 943,623 + Sama_0760 0.44 -1.0 943,624 - Sama_0760 0.44 +1.1 943,660 + Sama_0760 0.49 -0.5 943,749 + Sama_0760 0.59 -0.5 943,824 + Sama_0760 0.69 +1.3 943,824 + Sama_0760 0.69 -0.3
Or see this region's nucleotide sequence