Strain Fitness in Shewanella amazonensis SB2B around Sama_0671

Experiment: D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSama_0670 and Sama_0671 are separated by 62 nucleotidesSama_0671 and Sama_0672 are separated by 286 nucleotides Sama_0670: Sama_0670 - melanin biosynthesis protein TyrA, putative (RefSeq), at 826,433 to 827,368 _0670 Sama_0671: Sama_0671 - arginine repressor (RefSeq), at 827,431 to 827,895 _0671 Sama_0672: Sama_0672 - malate dehydrogenase (RefSeq), at 828,182 to 829,117 _0672 Position (kb) 827 828Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.431 kb on - strandat 826.432 kb on + strandat 826.432 kb on + strandat 826.432 kb on + strandat 826.433 kb on - strandat 826.438 kb on + strandat 826.447 kb on + strandat 826.470 kb on + strandat 826.471 kb on - strandat 826.568 kb on + strand, within Sama_0670at 826.569 kb on - strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.574 kb on + strand, within Sama_0670at 826.592 kb on + strand, within Sama_0670at 826.592 kb on + strand, within Sama_0670at 826.593 kb on - strand, within Sama_0670at 826.609 kb on + strand, within Sama_0670at 826.610 kb on - strand, within Sama_0670at 826.610 kb on - strand, within Sama_0670at 826.637 kb on + strand, within Sama_0670at 826.638 kb on - strand, within Sama_0670at 826.738 kb on - strand, within Sama_0670at 826.738 kb on - strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.770 kb on + strand, within Sama_0670at 826.771 kb on - strand, within Sama_0670at 826.771 kb on - strand, within Sama_0670at 826.852 kb on + strand, within Sama_0670at 826.852 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.967 kb on + strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.968 kb on - strand, within Sama_0670at 826.977 kb on + strand, within Sama_0670at 826.994 kb on - strand, within Sama_0670at 827.058 kb on + strand, within Sama_0670at 827.058 kb on + strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.059 kb on - strand, within Sama_0670at 827.065 kb on + strand, within Sama_0670at 827.072 kb on + strand, within Sama_0670at 827.072 kb on + strand, within Sama_0670at 827.073 kb on - strand, within Sama_0670at 827.138 kb on - strand, within Sama_0670at 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.345 kb on + strandat 827.346 kb on - strandat 827.346 kb on - strandat 827.349 kb on + strandat 827.433 kb on - strandat 827.442 kb on - strandat 827.442 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.446 kb on - strandat 827.457 kb on + strandat 827.458 kb on - strandat 827.491 kb on - strand, within Sama_0671at 827.533 kb on - strand, within Sama_0671at 827.579 kb on - strand, within Sama_0671at 827.582 kb on - strand, within Sama_0671at 827.582 kb on - strand, within Sama_0671at 827.605 kb on - strand, within Sama_0671at 827.605 kb on - strand, within Sama_0671at 827.615 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.629 kb on - strand, within Sama_0671at 827.703 kb on - strand, within Sama_0671at 827.703 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.735 kb on - strand, within Sama_0671at 827.749 kb on - strand, within Sama_0671at 827.749 kb on - strand, within Sama_0671at 827.782 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.812 kb on - strand, within Sama_0671at 827.896 kb on - strandat 828.066 kb on + strandat 828.067 kb on - strandat 828.094 kb on + strandat 828.120 kb on + strandat 828.120 kb on + strandat 828.120 kb on + strandat 828.121 kb on - strandat 828.147 kb on - strandat 828.165 kb on + strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.166 kb on - strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.167 kb on + strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.168 kb on - strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.177 kb on + strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.178 kb on - strandat 828.234 kb on + strandat 828.235 kb on - strandat 828.235 kb on - strandat 828.278 kb on + strand, within Sama_0672at 828.278 kb on + strand, within Sama_0672at 828.433 kb on + strand, within Sama_0672at 828.433 kb on + strand, within Sama_0672at 828.440 kb on - strand, within Sama_0672at 828.469 kb on + strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.470 kb on - strand, within Sama_0672at 828.527 kb on - strand, within Sama_0672at 828.527 kb on - strand, within Sama_0672at 828.593 kb on + strand, within Sama_0672at 828.593 kb on + strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.594 kb on - strand, within Sama_0672at 828.664 kb on + strand, within Sama_0672at 828.665 kb on - strand, within Sama_0672at 828.665 kb on - strand, within Sama_0672at 828.678 kb on + strand, within Sama_0672at 828.678 kb on + strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.679 kb on - strand, within Sama_0672at 828.693 kb on + strand, within Sama_0672at 828.693 kb on + strand, within Sama_0672at 828.756 kb on + strand, within Sama_0672at 828.757 kb on - strand, within Sama_0672at 828.757 kb on - strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.859 kb on + strand, within Sama_0672at 828.860 kb on - strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672at 828.886 kb on + strand, within Sama_0672

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml
remove
826,431 - -2.1
826,431 - -1.7
826,431 - -2.2
826,431 - -2.1
826,431 - -2.8
826,432 + -1.5
826,432 + -2.1
826,432 + -0.2
826,433 - -2.8
826,438 + -2.4
826,447 + -1.4
826,470 + -2.7
826,471 - -1.2
826,568 + Sama_0670 0.14 +0.1
826,569 - Sama_0670 0.15 -0.9
826,574 + Sama_0670 0.15 -2.4
826,574 + Sama_0670 0.15 -2.9
826,574 + Sama_0670 0.15 -1.2
826,592 + Sama_0670 0.17 -1.4
826,592 + Sama_0670 0.17 -2.2
826,593 - Sama_0670 0.17 -1.7
826,609 + Sama_0670 0.19 -2.4
826,610 - Sama_0670 0.19 +0.1
826,610 - Sama_0670 0.19 -3.4
826,637 + Sama_0670 0.22 -1.2
826,638 - Sama_0670 0.22 -0.9
826,738 - Sama_0670 0.33 +0.1
826,738 - Sama_0670 0.33 -1.8
826,770 + Sama_0670 0.36 -2.2
826,770 + Sama_0670 0.36 -2.6
826,770 + Sama_0670 0.36 -1.5
826,770 + Sama_0670 0.36 -1.4
826,770 + Sama_0670 0.36 +0.1
826,771 - Sama_0670 0.36 -1.8
826,771 - Sama_0670 0.36 -2.2
826,852 + Sama_0670 0.45 -1.7
826,852 + Sama_0670 0.45 -0.4
826,967 + Sama_0670 0.57 -2.6
826,967 + Sama_0670 0.57 -0.9
826,967 + Sama_0670 0.57 -2.9
826,968 - Sama_0670 0.57 -1.2
826,968 - Sama_0670 0.57 -2.2
826,968 - Sama_0670 0.57 -1.4
826,968 - Sama_0670 0.57 -0.9
826,968 - Sama_0670 0.57 -2.4
826,968 - Sama_0670 0.57 -2.7
826,968 - Sama_0670 0.57 -2.4
826,968 - Sama_0670 0.57 +0.1
826,977 + Sama_0670 0.58 -4.0
826,994 - Sama_0670 0.60 -0.7
827,058 + Sama_0670 0.67 +0.1
827,058 + Sama_0670 0.67 -1.7
827,059 - Sama_0670 0.67 -0.7
827,059 - Sama_0670 0.67 -1.8
827,059 - Sama_0670 0.67 -0.7
827,065 + Sama_0670 0.68 -2.7
827,072 + Sama_0670 0.68 -1.9
827,072 + Sama_0670 0.68 -2.4
827,073 - Sama_0670 0.68 -1.7
827,138 - Sama_0670 0.75 -1.8
827,345 + -2.7
827,345 + -2.5
827,345 + -2.1
827,345 + -2.9
827,346 - -1.5
827,346 - -2.6
827,349 + -1.4
827,433 - -0.7
827,442 - +0.1
827,442 - +0.3
827,446 - +0.4
827,446 - +0.8
827,446 - +0.8
827,446 - +0.6
827,457 + -1.4
827,458 - +1.8
827,491 - Sama_0671 0.13 -0.6
827,533 - Sama_0671 0.22 +0.2
827,579 - Sama_0671 0.32 -0.7
827,582 - Sama_0671 0.32 -1.3
827,582 - Sama_0671 0.32 -2.2
827,605 - Sama_0671 0.37 -1.2
827,605 - Sama_0671 0.37 +0.8
827,615 - Sama_0671 0.40 +1.1
827,629 - Sama_0671 0.43 -1.2
827,629 - Sama_0671 0.43 -0.9
827,629 - Sama_0671 0.43 -1.1
827,703 - Sama_0671 0.58 +0.8
827,703 - Sama_0671 0.58 -0.2
827,735 - Sama_0671 0.65 +0.5
827,735 - Sama_0671 0.65 -1.2
827,735 - Sama_0671 0.65 -2.1
827,735 - Sama_0671 0.65 +2.2
827,749 - Sama_0671 0.68 +0.3
827,749 - Sama_0671 0.68 -1.7
827,782 - Sama_0671 0.75 +0.2
827,812 - Sama_0671 0.82 +1.3
827,812 - Sama_0671 0.82 -1.5
827,812 - Sama_0671 0.82 -0.7
827,812 - Sama_0671 0.82 +0.8
827,896 - +0.5
828,066 + -0.5
828,067 - -1.8
828,094 + -0.4
828,120 + +0.5
828,120 + -0.3
828,120 + -0.8
828,121 - -1.4
828,147 - +0.2
828,165 + +0.3
828,166 - -2.9
828,166 - -0.9
828,166 - -1.2
828,166 - -0.4
828,167 + +0.5
828,167 + +0.2
828,167 + +0.6
828,167 + +1.1
828,167 + +0.2
828,168 - -1.1
828,168 - +0.5
828,168 - -0.7
828,168 - -1.2
828,168 - -1.8
828,168 - -0.3
828,177 + -0.8
828,177 + -0.1
828,177 + +0.3
828,177 + +0.8
828,177 + +0.8
828,178 - -1.2
828,178 - -1.1
828,178 - -1.2
828,178 - -1.2
828,178 - -1.9
828,178 - -1.5
828,178 - -2.6
828,178 - -0.4
828,178 - -2.1
828,234 + -0.6
828,235 - -0.3
828,235 - -0.8
828,278 + Sama_0672 0.10 -1.7
828,278 + Sama_0672 0.10 -1.6
828,433 + Sama_0672 0.27 +0.5
828,433 + Sama_0672 0.27 +0.6
828,440 - Sama_0672 0.28 -1.8
828,469 + Sama_0672 0.31 -1.5
828,470 - Sama_0672 0.31 -0.1
828,470 - Sama_0672 0.31 -0.9
828,470 - Sama_0672 0.31 +2.6
828,470 - Sama_0672 0.31 +0.4
828,527 - Sama_0672 0.37 -0.4
828,527 - Sama_0672 0.37 -1.7
828,593 + Sama_0672 0.44 +1.1
828,593 + Sama_0672 0.44 -0.9
828,594 - Sama_0672 0.44 -1.4
828,594 - Sama_0672 0.44 -0.1
828,594 - Sama_0672 0.44 -1.2
828,594 - Sama_0672 0.44 +0.3
828,594 - Sama_0672 0.44 +0.4
828,664 + Sama_0672 0.51 -1.2
828,665 - Sama_0672 0.52 +0.8
828,665 - Sama_0672 0.52 +0.2
828,678 + Sama_0672 0.53 -1.4
828,678 + Sama_0672 0.53 -0.6
828,679 - Sama_0672 0.53 +0.2
828,679 - Sama_0672 0.53 -1.7
828,679 - Sama_0672 0.53 -1.1
828,693 + Sama_0672 0.55 -1.2
828,693 + Sama_0672 0.55 +0.4
828,756 + Sama_0672 0.61 -0.7
828,757 - Sama_0672 0.61 -0.9
828,757 - Sama_0672 0.61 +0.3
828,859 + Sama_0672 0.72 -1.8
828,859 + Sama_0672 0.72 -0.4
828,859 + Sama_0672 0.72 -2.1
828,859 + Sama_0672 0.72 +0.8
828,860 - Sama_0672 0.72 -0.1
828,886 + Sama_0672 0.75 -0.2
828,886 + Sama_0672 0.75 -0.4
828,886 + Sama_0672 0.75 -0.9
828,886 + Sama_0672 0.75 -0.4

Or see this region's nucleotide sequence