Strain Fitness in Shewanella amazonensis SB2B around Sama_0669

Experiment: D-Cycloserine 0.03125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.03125 mg/ml
823,695	-		Sama_0668	0.15	+0.4
823,781	+		Sama_0668	0.23	+0.2
823,781	+		Sama_0668	0.23	-0.5
823,781	+		Sama_0668	0.23	+0.7
823,782	-		Sama_0668	0.24	-0.4
823,782	-		Sama_0668	0.24	+0.1
823,782	-		Sama_0668	0.24	-2.1
823,782	-		Sama_0668	0.24	+1.4
823,790	+		Sama_0668	0.24	+0.1
823,790	+		Sama_0668	0.24	+0.1
823,790	+		Sama_0668	0.24	-1.8
823,790	+		Sama_0668	0.24	-0.0
823,791	-		Sama_0668	0.24	-0.4
823,791	-		Sama_0668	0.24	+0.1
823,791	-		Sama_0668	0.24	-0.3
823,791	-		Sama_0668	0.24	+0.3
823,791	-		Sama_0668	0.24	+1.3
823,801	+		Sama_0668	0.25	-0.4
823,801	+		Sama_0668	0.25	-1.2
823,802	-		Sama_0668	0.26	-0.9
823,802	-		Sama_0668	0.26	-1.2
823,802	-		Sama_0668	0.26	-0.9
823,802	-		Sama_0668	0.26	-0.0
823,836	+		Sama_0668	0.29	-0.0
823,837	-		Sama_0668	0.29	+1.6
823,863	+		Sama_0668	0.31	-0.2
823,864	-		Sama_0668	0.32	-1.3
823,864	-		Sama_0668	0.32	-1.4
823,864	-		Sama_0668	0.32	+0.1
823,993	+		Sama_0668	0.44	+0.7
823,994	-		Sama_0668	0.44	-0.1
823,994	-		Sama_0668	0.44	-0.4
823,994	-		Sama_0668	0.44	-0.2
824,034	+		Sama_0668	0.48	+0.9
824,034	+		Sama_0668	0.48	-0.7
824,081	+		Sama_0668	0.53	+1.6
824,125	-		Sama_0668	0.57	-0.3
824,180	+		Sama_0668	0.62	-1.1
824,209	+		Sama_0668	0.65	+0.6
824,209	+		Sama_0668	0.65	+0.6
824,209	+		Sama_0668	0.65	+1.5
824,210	-		Sama_0668	0.65	-0.5
824,230	+		Sama_0668	0.67	-0.1
824,230	+		Sama_0668	0.67	+0.7
824,230	+		Sama_0668	0.67	+1.8
824,230	+		Sama_0668	0.67	+0.4
824,230	+		Sama_0668	0.67	+1.3
824,230	+		Sama_0668	0.67	+0.1
824,230	+		Sama_0668	0.67	+1.4
824,230	+		Sama_0668	0.67	+0.6
824,231	-		Sama_0668	0.67	-1.9
824,231	-		Sama_0668	0.67	+0.2
824,231	-		Sama_0668	0.67	-0.2
824,231	-		Sama_0668	0.67	+0.2
824,231	-		Sama_0668	0.67	+0.8
824,231	-		Sama_0668	0.67	-1.6
824,231	-		Sama_0668	0.67	-2.2
824,231	-		Sama_0668	0.67	-2.2
824,231	-		Sama_0668	0.67	+0.4
824,231	-		Sama_0668	0.67	-1.1
824,231	-		Sama_0668	0.67	-1.4
824,231	-		Sama_0668	0.67	-0.2
824,231	-		Sama_0668	0.67	-1.4
824,298	+		Sama_0668	0.74	-0.7
824,298	+		Sama_0668	0.74	+1.1
824,298	+		Sama_0668	0.74	+0.3
824,298	+		Sama_0668	0.74	-0.0
824,299	-		Sama_0668	0.74	-1.0
824,331	+		Sama_0668	0.77	+0.3
824,331	+		Sama_0668	0.77	+1.2
824,378	+		Sama_0668	0.82	-1.4
824,378	+		Sama_0668	0.82	+0.3
824,379	-		Sama_0668	0.82	-1.1
824,379	-		Sama_0668	0.82	-0.4
824,414	+		Sama_0668	0.85	-0.4
824,414	+		Sama_0668	0.85	+2.1
824,414	+		Sama_0668	0.85	+0.8
824,414	+		Sama_0668	0.85	+1.2
824,415	-		Sama_0668	0.85	+0.4
824,415	-		Sama_0668	0.85	+0.0
824,514	+				+0.3
824,544	+				+1.1
824,545	-				-1.7
824,563	+				+1.6
824,563	+				+1.3
824,563	+				+1.6
824,564	-				-1.6
824,575	+				+1.1
824,575	+				+1.6
824,576	-				-1.9
824,583	+				+0.4
824,593	+				+1.9
824,593	+				+1.2
824,593	+				+1.6
824,630	+				+0.4
824,630	+				+0.8
824,631	-				-0.9
824,639	+				+0.6
824,640	-				-0.5
824,708	+				-0.2
824,708	+				+0.1
824,709	-				-1.4
824,734	+				-1.2
824,734	+				-0.6
824,734	+				-0.8
824,734	+				-0.1
824,734	+				-1.1
824,734	+				-0.7
824,735	-				-0.2
824,735	-				-0.5
824,735	-				-1.9
824,735	-				-1.8
824,736	+				-0.7
824,736	+				-1.6
824,736	+				+0.3
824,736	+				-1.7
824,736	+				+0.9
824,736	+				-0.9
824,736	+				+0.1
824,736	+				-1.2
824,736	+				+0.6
824,736	+				-0.7
824,736	+				-0.3
824,736	+				-0.0
824,736	+				-0.9
824,736	+				+1.1
824,736	+				-0.2
824,736	+				+0.8
824,736	+				+0.4
824,737	-				-0.7
824,737	-				-1.5
824,737	-				+0.1
824,737	-				-0.8
824,737	-				+0.2
824,737	-				-1.4
824,737	-				-2.4
824,737	-				-0.9
824,737	-				+0.1
824,795	+		Sama_0669	0.10	+0.1
824,795	+		Sama_0669	0.10	-0.4
824,795	+		Sama_0669	0.10	-0.1
824,795	+		Sama_0669	0.10	+1.5
824,796	-		Sama_0669	0.10	-0.9
824,797	+		Sama_0669	0.10	-0.3
824,797	+		Sama_0669	0.10	+0.4
824,797	+		Sama_0669	0.10	-1.8
824,797	+		Sama_0669	0.10	+0.1
824,797	+		Sama_0669	0.10	+0.5
824,798	-		Sama_0669	0.10	-0.7
824,860	+		Sama_0669	0.14	+2.4
824,861	-		Sama_0669	0.14	-2.1
824,861	-		Sama_0669	0.14	-2.3
824,861	-		Sama_0669	0.14	+0.3
824,929	+		Sama_0669	0.18	-0.6
824,929	+		Sama_0669	0.18	+0.9
824,930	-		Sama_0669	0.18	-1.7
824,931	+		Sama_0669	0.18	+0.2
824,931	+		Sama_0669	0.18	+2.0
824,932	-		Sama_0669	0.18	-1.6
824,932	-		Sama_0669	0.18	-1.7
824,932	-		Sama_0669	0.18	-1.4
824,932	-		Sama_0669	0.18	-0.5
824,932	-		Sama_0669	0.18	+0.6
824,938	+		Sama_0669	0.19	+0.4
824,938	+		Sama_0669	0.19	-0.7
824,978	+		Sama_0669	0.21	+1.6
824,979	-		Sama_0669	0.21	-1.9
824,984	+		Sama_0669	0.21	-0.5
824,984	+		Sama_0669	0.21	+0.7
824,984	+		Sama_0669	0.21	-0.1
824,984	+		Sama_0669	0.21	-0.4
824,984	+		Sama_0669	0.21	-0.0
824,984	+		Sama_0669	0.21	+0.7
824,985	-		Sama_0669	0.21	-2.5
824,985	-		Sama_0669	0.21	-0.9
824,985	-		Sama_0669	0.21	-0.4
824,985	-		Sama_0669	0.21	-2.2
824,985	-		Sama_0669	0.21	-1.4
825,123	+		Sama_0669	0.30	+0.2
825,123	+		Sama_0669	0.30	+0.1
825,123	+		Sama_0669	0.30	+2.2
825,124	-		Sama_0669	0.30	-0.5
825,165	+		Sama_0669	0.32	+2.3
825,165	+		Sama_0669	0.32	-0.6
825,166	-		Sama_0669	0.32	-2.9
825,199	-		Sama_0669	0.34	-2.2
825,219	+		Sama_0669	0.35	+2.8
825,219	+		Sama_0669	0.35	+0.7
825,219	+		Sama_0669	0.35	+1.1
825,219	+		Sama_0669	0.35	+0.4
825,219	+		Sama_0669	0.35	+0.1
825,219	+		Sama_0669	0.35	+0.6
825,219	+		Sama_0669	0.35	-1.2
825,219	+		Sama_0669	0.35	-0.8
825,219	+		Sama_0669	0.35	+1.5
825,220	-		Sama_0669	0.35	-1.5
825,220	-		Sama_0669	0.35	-1.2
825,220	-		Sama_0669	0.35	-0.9
825,220	-		Sama_0669	0.35	+0.8
825,220	-		Sama_0669	0.35	-2.4
825,220	-		Sama_0669	0.35	-1.7
825,220	-		Sama_0669	0.35	-2.2
825,220	-		Sama_0669	0.35	-3.2
825,220	-		Sama_0669	0.35	-1.0
825,220	-		Sama_0669	0.35	+1.1
825,220	-		Sama_0669	0.35	-1.6
825,220	-		Sama_0669	0.35	-0.8
825,220	-		Sama_0669	0.35	-1.9
825,221	+		Sama_0669	0.35	+0.1
825,221	+		Sama_0669	0.35	+1.1
825,221	+		Sama_0669	0.35	+0.5
825,222	-		Sama_0669	0.35	-1.2
825,222	-		Sama_0669	0.35	-1.5
825,222	-		Sama_0669	0.35	-0.6
825,285	+		Sama_0669	0.39	+1.7
825,295	+		Sama_0669	0.40	-0.4
825,321	+		Sama_0669	0.41	+1.1
825,322	-		Sama_0669	0.41	+0.1
825,322	-		Sama_0669	0.41	+0.1
825,324	-		Sama_0669	0.41	+0.1
825,334	+		Sama_0669	0.42	+0.6
825,335	-		Sama_0669	0.42	-1.5
825,335	-		Sama_0669	0.42	-1.1
825,335	-		Sama_0669	0.42	-1.1
825,346	+		Sama_0669	0.43	+0.4
825,354	+		Sama_0669	0.43	-1.2
825,354	+		Sama_0669	0.43	+1.3
825,354	+		Sama_0669	0.43	+2.0
825,354	+		Sama_0669	0.43	+1.0
825,355	-		Sama_0669	0.43	-1.8
825,355	-		Sama_0669	0.43	+0.1
825,355	-		Sama_0669	0.43	-0.7
825,355	-		Sama_0669	0.43	-2.6
825,355	-		Sama_0669	0.43	-1.4
825,355	-		Sama_0669	0.43	-0.7
825,355	-		Sama_0669	0.43	-1.1
825,355	-		Sama_0669	0.43	-1.5
825,355	-		Sama_0669	0.43	-2.5
825,376	-		Sama_0669	0.44	-0.4
825,404	+		Sama_0669	0.46	+1.1
825,404	+		Sama_0669	0.46	+0.4
825,404	+		Sama_0669	0.46	+1.3
825,404	+		Sama_0669	0.46	+0.8
825,404	+		Sama_0669	0.46	+0.4
825,433	+		Sama_0669	0.48	+0.8
825,434	-		Sama_0669	0.48	-0.4
825,484	+		Sama_0669	0.51	+0.7
825,484	+		Sama_0669	0.51	+0.6
825,484	+		Sama_0669	0.51	+1.9
825,485	-		Sama_0669	0.51	-0.9
825,555	+		Sama_0669	0.55	+0.1
825,555	+		Sama_0669	0.55	+1.5
825,555	+		Sama_0669	0.55	+1.2
825,555	+		Sama_0669	0.55	+0.7
825,556	-		Sama_0669	0.55	-0.9
825,556	-		Sama_0669	0.55	-0.7
825,556	-		Sama_0669	0.55	-0.8
825,556	-		Sama_0669	0.55	-0.1
825,578	+		Sama_0669	0.56	+0.8
825,578	+		Sama_0669	0.56	+0.5
825,578	+		Sama_0669	0.56	+0.4
825,579	-		Sama_0669	0.56	-1.2
825,612	+		Sama_0669	0.58	+1.1
825,653	+		Sama_0669	0.61	+0.8
825,654	-		Sama_0669	0.61	-1.8
825,654	-		Sama_0669	0.61	+0.1
825,654	-		Sama_0669	0.61	+0.5
825,667	-		Sama_0669	0.61	-1.3
825,691	+		Sama_0669	0.63	+1.6
825,691	+		Sama_0669	0.63	+1.1
825,756	+		Sama_0669	0.67	+0.6
825,757	-		Sama_0669	0.67	-2.0
825,757	-		Sama_0669	0.67	+1.2
825,757	-		Sama_0669	0.67	-0.5
825,757	-		Sama_0669	0.67	-3.1
825,757	-		Sama_0669	0.67	-0.7
825,782	+		Sama_0669	0.68	-0.2
825,797	+		Sama_0669	0.69	-0.9
825,797	+		Sama_0669	0.69	+0.0
825,798	-		Sama_0669	0.69	-2.1
825,798	-		Sama_0669	0.69	+0.3
825,856	+		Sama_0669	0.72	+1.5
825,856	+		Sama_0669	0.72	-1.9
825,856	+		Sama_0669	0.72	+1.8
825,856	+		Sama_0669	0.72	+3.5
825,856	+		Sama_0669	0.72	+1.1
825,857	-		Sama_0669	0.73	-0.6
825,857	-		Sama_0669	0.73	-0.1
825,857	-		Sama_0669	0.73	-1.0
825,857	-		Sama_0669	0.73	-1.5
826,038	-		Sama_0669	0.83	+0.8
826,038	-		Sama_0669	0.83	-0.4
826,088	+		Sama_0669	0.86	+2.2
826,088	+		Sama_0669	0.86	+1.8
826,088	+		Sama_0669	0.86	+1.1
826,089	-		Sama_0669	0.86	-1.3
826,143	+		Sama_0669	0.89	+2.0
826,143	+		Sama_0669	0.89	+2.1
826,143	+		Sama_0669	0.89	+2.0
826,144	-		Sama_0669	0.89	+0.3
826,144	-		Sama_0669	0.89	-1.2
826,144	-		Sama_0669	0.89	-2.6
826,144	-		Sama_0669	0.89	-2.3
826,144	-		Sama_0669	0.89	-0.5
826,144	-		Sama_0669	0.89	-2.6
826,144	-		Sama_0669	0.89	+0.2
826,275	+				+2.5
826,276	-				+0.9
826,320	+				+1.8
826,321	-				-2.3
826,323	+				+1.6
826,324	-				+0.2
826,324	-				-0.7
826,324	-				-1.1
826,332	+				+1.3
826,332	+				+2.5
826,332	+				+2.3
826,333	-				-1.4
826,349	+				+0.5
826,350	-				-3.7
826,380	-				-1.7
826,384	+				-1.2
826,385	-				-2.9
826,411	+				-2.9
826,412	-				+0.1
826,412	-				-0.7
826,418	+				-1.4
826,426	+				-2.5
826,427	-				-0.9
826,427	-				-1.8
826,430	+				-1.9
826,430	+				-1.7
826,430	+				-2.4
826,430	+				-2.2
826,431	-				-2.1
826,431	-				-1.7
826,431	-				-2.2
826,431	-				-2.1
826,431	-				-2.8
826,432	+				-1.5
826,432	+				-2.1
826,432	+				-0.2
826,433	-				-2.8
826,438	+				-2.4
826,447	+				-1.4
826,470	+				-2.7
826,471	-				-1.2
826,568	+		Sama_0670	0.14	+0.1
826,569	-		Sama_0670	0.15	-0.9
826,574	+		Sama_0670	0.15	-2.4
826,574	+		Sama_0670	0.15	-2.9
826,574	+		Sama_0670	0.15	-1.2
826,592	+		Sama_0670	0.17	-1.4
826,592	+		Sama_0670	0.17	-2.2
826,593	-		Sama_0670	0.17	-1.7
826,609	+		Sama_0670	0.19	-2.4
826,610	-		Sama_0670	0.19	+0.1
826,610	-		Sama_0670	0.19	-3.4
826,637	+		Sama_0670	0.22	-1.2
826,638	-		Sama_0670	0.22	-0.9
826,738	-		Sama_0670	0.33	+0.1
826,738	-		Sama_0670	0.33	-1.8
826,770	+		Sama_0670	0.36	-2.2
826,770	+		Sama_0670	0.36	-2.6
826,770	+		Sama_0670	0.36	-1.5
826,770	+		Sama_0670	0.36	-1.4
826,770	+		Sama_0670	0.36	+0.1
826,771	-		Sama_0670	0.36	-1.8
826,771	-		Sama_0670	0.36	-2.2
826,852	+		Sama_0670	0.45	-1.7
826,852	+		Sama_0670	0.45	-0.4
826,967	+		Sama_0670	0.57	-2.6
826,967	+		Sama_0670	0.57	-0.9
826,967	+		Sama_0670	0.57	-2.9
826,968	-		Sama_0670	0.57	-1.2
826,968	-		Sama_0670	0.57	-2.2
826,968	-		Sama_0670	0.57	-1.4
826,968	-		Sama_0670	0.57	-0.9
826,968	-		Sama_0670	0.57	-2.4
826,968	-		Sama_0670	0.57	-2.7
826,968	-		Sama_0670	0.57	-2.4
826,968	-		Sama_0670	0.57	+0.1
826,977	+		Sama_0670	0.58	-4.0
826,994	-		Sama_0670	0.60	-0.7
827,058	+		Sama_0670	0.67	+0.1
827,058	+		Sama_0670	0.67	-1.7
827,059	-		Sama_0670	0.67	-0.7
827,059	-		Sama_0670	0.67	-1.8
827,059	-		Sama_0670	0.67	-0.7
827,065	+		Sama_0670	0.68	-2.7
827,072	+		Sama_0670	0.68	-1.9
827,072	+		Sama_0670	0.68	-2.4
827,073	-		Sama_0670	0.68	-1.7
827,138	-		Sama_0670	0.75	-1.8