Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0638 and Sama_0639 overlap by 4 nucleotides Sama_0639 and Sama_0640 are separated by 27 nucleotides Sama_0640 and Sama_0641 are separated by 2 nucleotides Sama_0641 and Sama_0642 are separated by 145 nucleotides
Sama_0638: Sama_0638 - TPR domain-containing protein (RefSeq), at 794,055 to 795,434
_0638
Sama_0639: Sama_0639 - peptide deformylase (RefSeq), at 795,431 to 795,955
_0639
Sama_0640: Sama_0640 - SlyX protein (RefSeq), at 795,983 to 796,207
_0640
Sama_0641: Sama_0641 - hypothetical protein (RefSeq), at 796,210 to 797,187
_0641
Sama_0642: Sama_0642 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA (RefSeq), at 797,333 to 798,097
_0642
Position (kb) 796
797
798 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 795.210 kb on - strand, within Sama_0638 at 795.210 kb on - strand, within Sama_0638 at 795.253 kb on + strand, within Sama_0638 at 795.336 kb on + strand at 795.336 kb on + strand at 795.336 kb on + strand at 795.337 kb on - strand at 795.337 kb on - strand at 795.359 kb on - strand at 795.365 kb on + strand at 795.414 kb on + strand at 795.415 kb on - strand at 795.415 kb on - strand at 795.567 kb on + strand, within Sama_0639 at 795.567 kb on + strand, within Sama_0639 at 795.567 kb on + strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.568 kb on - strand, within Sama_0639 at 795.581 kb on + strand, within Sama_0639 at 795.582 kb on - strand, within Sama_0639 at 795.582 kb on - strand, within Sama_0639 at 795.622 kb on + strand, within Sama_0639 at 795.622 kb on + strand, within Sama_0639 at 795.623 kb on - strand, within Sama_0639 at 795.742 kb on - strand, within Sama_0639 at 795.742 kb on - strand, within Sama_0639 at 795.806 kb on + strand, within Sama_0639 at 795.806 kb on + strand, within Sama_0639 at 795.809 kb on - strand, within Sama_0639 at 795.809 kb on - strand, within Sama_0639 at 795.878 kb on + strand, within Sama_0639 at 795.878 kb on + strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.879 kb on - strand, within Sama_0639 at 795.981 kb on + strand at 795.982 kb on - strand at 795.982 kb on - strand at 795.982 kb on - strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.984 kb on + strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.985 kb on - strand at 795.987 kb on + strand at 795.988 kb on - strand at 796.047 kb on - strand, within Sama_0640 at 796.047 kb on - strand, within Sama_0640 at 796.047 kb on - strand, within Sama_0640 at 796.052 kb on - strand, within Sama_0640 at 796.052 kb on - strand, within Sama_0640 at 796.105 kb on + strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.106 kb on - strand, within Sama_0640 at 796.120 kb on + strand, within Sama_0640 at 796.121 kb on - strand, within Sama_0640 at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.193 kb on + strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.194 kb on - strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.195 kb on + strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.196 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.212 kb on - strand at 796.226 kb on + strand at 796.226 kb on + strand at 796.227 kb on - strand at 796.227 kb on - strand at 796.227 kb on - strand at 796.252 kb on - strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.297 kb on + strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.298 kb on - strand at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.336 kb on + strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.337 kb on - strand, within Sama_0641 at 796.468 kb on + strand, within Sama_0641 at 796.474 kb on + strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.475 kb on - strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.646 kb on + strand, within Sama_0641 at 796.647 kb on - strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.731 kb on + strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.732 kb on - strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.783 kb on + strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.784 kb on - strand, within Sama_0641 at 796.867 kb on + strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.868 kb on - strand, within Sama_0641 at 796.897 kb on + strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 796.898 kb on - strand, within Sama_0641 at 797.072 kb on + strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.073 kb on - strand, within Sama_0641 at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.163 kb on + strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.164 kb on - strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.167 kb on + strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.168 kb on - strand at 797.169 kb on - strand at 797.179 kb on - strand at 797.210 kb on + strand at 797.210 kb on + strand at 797.248 kb on + strand at 797.248 kb on + strand at 797.249 kb on - strand at 797.249 kb on - strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.254 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.257 kb on + strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.258 kb on - strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.261 kb on + strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.262 kb on - strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.264 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.266 kb on + strand at 797.267 kb on - strand at 797.267 kb on - strand at 797.288 kb on + strand at 797.298 kb on + strand at 797.303 kb on + strand at 797.303 kb on + strand at 797.320 kb on + strand at 797.345 kb on + strand at 797.382 kb on + strand at 797.383 kb on - strand at 797.392 kb on + strand at 797.392 kb on + strand at 797.395 kb on + strand at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.462 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.489 kb on + strand, within Sama_0642 at 797.490 kb on - strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.769 kb on + strand, within Sama_0642 at 797.946 kb on + strand, within Sama_0642 at 797.957 kb on + strand, within Sama_0642 at 797.988 kb on - strand, within Sama_0642 at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.095 kb on + strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.096 kb on - strand at 798.098 kb on + strand at 798.099 kb on - strand at 798.099 kb on - strand at 798.113 kb on + strand at 798.114 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 795,210 - Sama_0638 0.84 +0.3 795,210 - Sama_0638 0.84 -0.3 795,253 + Sama_0638 0.87 -0.2 795,336 + +0.7 795,336 + +0.1 795,336 + +0.8 795,337 - -1.1 795,337 - -1.5 795,359 - -1.0 795,365 + +0.7 795,414 + +3.2 795,415 - -0.3 795,415 - -0.7 795,567 + Sama_0639 0.26 -0.5 795,567 + Sama_0639 0.26 -0.7 795,567 + Sama_0639 0.26 -1.2 795,568 - Sama_0639 0.26 -1.0 795,568 - Sama_0639 0.26 +0.8 795,568 - Sama_0639 0.26 -0.2 795,568 - Sama_0639 0.26 -0.0 795,568 - Sama_0639 0.26 -3.1 795,581 + Sama_0639 0.29 -1.0 795,582 - Sama_0639 0.29 +0.3 795,582 - Sama_0639 0.29 +0.1 795,622 + Sama_0639 0.36 -0.3 795,622 + Sama_0639 0.36 -0.8 795,623 - Sama_0639 0.37 -0.1 795,742 - Sama_0639 0.59 -1.3 795,742 - Sama_0639 0.59 +0.8 795,806 + Sama_0639 0.71 +1.2 795,806 + Sama_0639 0.71 +0.7 795,809 - Sama_0639 0.72 +1.0 795,809 - Sama_0639 0.72 +0.6 795,878 + Sama_0639 0.85 -1.0 795,878 + Sama_0639 0.85 +1.1 795,879 - Sama_0639 0.85 -1.3 795,879 - Sama_0639 0.85 -0.3 795,879 - Sama_0639 0.85 +0.8 795,981 + -0.0 795,982 - -0.9 795,982 - +0.9 795,982 - -0.0 795,984 + -1.2 795,984 + -0.2 795,984 + +1.1 795,984 + -0.5 795,984 + -0.9 795,985 - -0.7 795,985 - +0.8 795,985 - -0.3 795,985 - +1.3 795,987 + +0.4 795,988 - -2.9 796,047 - Sama_0640 0.28 -0.6 796,047 - Sama_0640 0.28 -0.3 796,047 - Sama_0640 0.28 +0.0 796,052 - Sama_0640 0.31 -0.2 796,052 - Sama_0640 0.31 +0.2 796,105 + Sama_0640 0.54 -0.5 796,106 - Sama_0640 0.55 -0.9 796,106 - Sama_0640 0.55 +0.9 796,106 - Sama_0640 0.55 -0.5 796,120 + Sama_0640 0.61 +0.6 796,121 - Sama_0640 0.61 +0.4 796,193 + +1.0 796,193 + -1.2 796,193 + +0.7 796,193 + +0.7 796,193 + -1.0 796,193 + +1.8 796,193 + -0.2 796,193 + -0.2 796,193 + +1.3 796,193 + +1.0 796,193 + -2.2 796,193 + -0.7 796,193 + +0.1 796,193 + -0.6 796,194 - +1.4 796,194 - +0.3 796,194 - +0.2 796,194 - +0.5 796,194 - -0.9 796,194 - -0.7 796,194 - +0.7 796,194 - -0.8 796,194 - +0.3 796,194 - +0.4 796,194 - +0.5 796,195 + -0.2 796,195 + +1.5 796,195 + -0.2 796,195 + -0.8 796,196 - -0.2 796,196 - +0.5 796,196 - -0.2 796,196 - -1.0 796,196 - +0.2 796,196 - -1.7 796,196 - +1.0 796,212 - +0.7 796,212 - +1.0 796,212 - +1.3 796,212 - -0.6 796,226 + -1.0 796,226 + +0.7 796,227 - -0.1 796,227 - +0.1 796,227 - +0.5 796,252 - -1.2 796,297 + +0.7 796,297 + +0.8 796,297 + -0.6 796,297 + -1.9 796,297 + +0.0 796,298 - -0.6 796,298 - -1.2 796,298 - +0.1 796,298 - +0.5 796,336 + Sama_0641 0.13 -1.8 796,336 + Sama_0641 0.13 -0.0 796,336 + Sama_0641 0.13 -0.3 796,336 + Sama_0641 0.13 -0.4 796,336 + Sama_0641 0.13 -0.2 796,336 + Sama_0641 0.13 +1.5 796,337 - Sama_0641 0.13 +1.7 796,337 - Sama_0641 0.13 -1.2 796,337 - Sama_0641 0.13 -0.2 796,337 - Sama_0641 0.13 +1.2 796,337 - Sama_0641 0.13 -0.7 796,337 - Sama_0641 0.13 +0.7 796,337 - Sama_0641 0.13 +0.5 796,337 - Sama_0641 0.13 +0.4 796,337 - Sama_0641 0.13 +0.5 796,468 + Sama_0641 0.26 -0.8 796,474 + Sama_0641 0.27 -1.5 796,475 - Sama_0641 0.27 -1.2 796,475 - Sama_0641 0.27 +0.7 796,646 + Sama_0641 0.45 +0.4 796,646 + Sama_0641 0.45 +0.5 796,647 - Sama_0641 0.45 +0.7 796,731 + Sama_0641 0.53 +0.3 796,731 + Sama_0641 0.53 -0.9 796,732 - Sama_0641 0.53 -1.5 796,732 - Sama_0641 0.53 +0.3 796,783 + Sama_0641 0.59 -0.7 796,783 + Sama_0641 0.59 +0.4 796,784 - Sama_0641 0.59 +0.3 796,784 - Sama_0641 0.59 -0.8 796,867 + Sama_0641 0.67 -0.7 796,868 - Sama_0641 0.67 +1.7 796,868 - Sama_0641 0.67 -0.0 796,868 - Sama_0641 0.67 +1.0 796,897 + Sama_0641 0.70 +0.1 796,898 - Sama_0641 0.70 -0.5 796,898 - Sama_0641 0.70 -0.9 797,072 + Sama_0641 0.88 -0.6 797,073 - Sama_0641 0.88 -1.7 797,073 - Sama_0641 0.88 -1.0 797,073 - Sama_0641 0.88 +1.0 797,073 - Sama_0641 0.88 +0.9 797,163 + +0.4 797,163 + +0.2 797,163 + +0.1 797,163 + +0.1 797,163 + -0.3 797,163 + -0.5 797,163 + +0.2 797,163 + -0.9 797,163 + -0.2 797,163 + +1.7 797,163 + -0.3 797,163 + -0.4 797,163 + -0.8 797,163 + -0.2 797,163 + +0.3 797,164 - -0.6 797,164 - -0.4 797,164 - +0.7 797,164 - -2.3 797,164 - -0.3 797,164 - -1.7 797,164 - -0.2 797,164 - -0.4 797,164 - -0.0 797,164 - +0.4 797,167 + +0.6 797,167 + +0.0 797,167 + -0.2 797,167 + +0.9 797,167 + -1.0 797,167 + -0.1 797,167 + -0.0 797,167 + +1.1 797,167 + -0.8 797,168 - +0.4 797,168 - -1.0 797,168 - +1.3 797,168 - -1.7 797,168 - -0.5 797,168 - -2.7 797,168 - -0.7 797,168 - -1.8 797,168 - +0.5 797,168 - -1.1 797,169 - +0.7 797,179 - -0.3 797,210 + -1.0 797,210 + -0.1 797,248 + +0.7 797,248 + +0.1 797,249 - -0.3 797,249 - -1.3 797,254 + -0.2 797,254 + +0.5 797,254 + -0.3 797,257 + -0.5 797,257 + +0.9 797,257 + +0.4 797,257 + -1.2 797,257 + -1.9 797,257 + -2.3 797,258 - +0.1 797,258 - -0.7 797,258 - +0.8 797,261 + +0.5 797,261 + -1.9 797,261 + -0.3 797,261 + -0.7 797,261 + -0.3 797,261 + +0.6 797,261 + -1.6 797,262 - +0.9 797,262 - -0.7 797,262 - -1.5 797,264 + -1.4 797,264 + +0.9 797,264 + -0.3 797,264 + -0.4 797,264 + -1.2 797,266 + -0.9 797,266 + -1.5 797,266 + +0.7 797,266 + -0.5 797,267 - -0.6 797,267 - -1.8 797,288 + -0.6 797,298 + -2.6 797,303 + -0.9 797,303 + +0.3 797,320 + -1.1 797,345 + -1.3 797,382 + -0.8 797,383 - +0.1 797,392 + -0.4 797,392 + -0.8 797,395 + -1.2 797,462 + Sama_0642 0.17 -0.8 797,462 + Sama_0642 0.17 -1.5 797,462 + Sama_0642 0.17 -1.2 797,489 + Sama_0642 0.20 -1.3 797,489 + Sama_0642 0.20 -3.2 797,490 - Sama_0642 0.21 -0.0 797,769 + Sama_0642 0.57 -0.9 797,769 + Sama_0642 0.57 -2.3 797,946 + Sama_0642 0.80 -1.8 797,957 + Sama_0642 0.82 +0.7 797,988 - Sama_0642 0.86 -1.4 798,095 + -0.7 798,095 + -1.7 798,095 + -0.9 798,095 + +0.2 798,095 + -2.3 798,096 - +0.0 798,096 - -1.2 798,096 - -0.9 798,096 - -1.7 798,098 + -0.0 798,099 - +1.3 798,099 - -0.2 798,113 + -0.4 798,114 - -1.4
Or see this region's nucleotide sequence