Strain Fitness in Shewanella amazonensis SB2B around Sama_0617

Experiment: D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0616 and Sama_0617 are separated by 219 nucleotidesSama_0617 and Sama_0618 are separated by 97 nucleotides Sama_0616: Sama_0616 - leucyl aminopeptidase (RefSeq), at 768,849 to 770,375 _0616 Sama_0617: Sama_0617 - alkyl hydroperoxide reductase, C subunit (RefSeq), at 770,595 to 771,164 _0617 Sama_0618: Sama_0618 - alkyl hydroperoxide reductase, F subunit (RefSeq), at 771,262 to 772,824 _0618 Position (kb) 770 771 772Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.670 kb on + strand, within Sama_0616at 769.671 kb on - strand, within Sama_0616at 769.689 kb on + strand, within Sama_0616at 769.950 kb on + strand, within Sama_0616at 769.950 kb on + strand, within Sama_0616at 769.966 kb on - strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.034 kb on + strand, within Sama_0616at 770.035 kb on - strand, within Sama_0616at 770.136 kb on + strand, within Sama_0616at 770.136 kb on + strand, within Sama_0616at 770.137 kb on - strand, within Sama_0616at 770.265 kb on - strandat 770.281 kb on + strandat 770.339 kb on - strandat 770.342 kb on + strandat 770.342 kb on + strandat 770.342 kb on + strandat 770.343 kb on - strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.512 kb on + strandat 770.513 kb on - strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.515 kb on + strandat 770.516 kb on - strandat 770.516 kb on - strandat 770.516 kb on - strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.536 kb on + strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.537 kb on - strandat 770.579 kb on + strandat 770.579 kb on + strandat 770.581 kb on + strandat 770.581 kb on + strandat 770.581 kb on + strandat 770.686 kb on + strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.687 kb on - strand, within Sama_0617at 770.738 kb on - strand, within Sama_0617at 770.738 kb on - strand, within Sama_0617at 770.772 kb on + strand, within Sama_0617at 770.773 kb on - strand, within Sama_0617at 770.773 kb on - strand, within Sama_0617at 770.805 kb on + strand, within Sama_0617at 770.805 kb on + strand, within Sama_0617at 770.907 kb on - strand, within Sama_0617at 770.919 kb on - strand, within Sama_0617at 770.963 kb on + strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.964 kb on - strand, within Sama_0617at 770.971 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.992 kb on + strand, within Sama_0617at 770.993 kb on - strand, within Sama_0617at 771.051 kb on - strand, within Sama_0617at 771.069 kb on + strand, within Sama_0617at 771.070 kb on - strand, within Sama_0617at 771.070 kb on - strand, within Sama_0617at 771.077 kb on + strand, within Sama_0617at 771.078 kb on - strand, within Sama_0617at 771.162 kb on + strandat 771.232 kb on + strandat 771.233 kb on - strandat 771.236 kb on + strandat 771.236 kb on + strandat 771.237 kb on - strandat 771.237 kb on - strandat 771.267 kb on - strandat 771.291 kb on + strandat 771.291 kb on + strandat 771.292 kb on - strandat 771.292 kb on - strandat 771.298 kb on + strandat 771.298 kb on + strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.299 kb on - strandat 771.455 kb on + strand, within Sama_0618at 771.456 kb on - strand, within Sama_0618at 771.513 kb on + strand, within Sama_0618at 771.513 kb on + strand, within Sama_0618at 771.514 kb on - strand, within Sama_0618at 771.576 kb on + strand, within Sama_0618at 771.576 kb on + strand, within Sama_0618at 771.624 kb on + strand, within Sama_0618at 771.624 kb on + strand, within Sama_0618at 771.625 kb on - strand, within Sama_0618at 771.780 kb on + strand, within Sama_0618at 771.889 kb on + strand, within Sama_0618at 771.896 kb on + strand, within Sama_0618at 771.896 kb on + strand, within Sama_0618at 771.897 kb on - strand, within Sama_0618at 771.897 kb on - strand, within Sama_0618at 771.897 kb on - strand, within Sama_0618at 771.897 kb on - strand, within Sama_0618at 771.897 kb on - strand, within Sama_0618at 771.903 kb on - strand, within Sama_0618at 771.940 kb on + strand, within Sama_0618at 771.940 kb on + strand, within Sama_0618at 771.940 kb on + strand, within Sama_0618at 771.951 kb on + strand, within Sama_0618at 771.951 kb on + strand, within Sama_0618at 771.963 kb on + strand, within Sama_0618at 772.027 kb on - strand, within Sama_0618at 772.027 kb on - strand, within Sama_0618at 772.027 kb on - strand, within Sama_0618at 772.090 kb on + strand, within Sama_0618

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml
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769,670 + Sama_0616 0.54 +1.0
769,670 + Sama_0616 0.54 -1.5
769,670 + Sama_0616 0.54 +0.3
769,670 + Sama_0616 0.54 +0.8
769,670 + Sama_0616 0.54 -0.2
769,671 - Sama_0616 0.54 -0.3
769,689 + Sama_0616 0.55 -1.6
769,950 + Sama_0616 0.72 +0.1
769,950 + Sama_0616 0.72 -1.3
769,966 - Sama_0616 0.73 +0.7
770,034 + Sama_0616 0.78 +0.1
770,034 + Sama_0616 0.78 +0.1
770,034 + Sama_0616 0.78 -0.6
770,035 - Sama_0616 0.78 +0.2
770,136 + Sama_0616 0.84 +0.5
770,136 + Sama_0616 0.84 +0.0
770,137 - Sama_0616 0.84 +1.5
770,265 - +0.3
770,281 + -1.5
770,339 - +0.1
770,342 + -1.0
770,342 + +0.3
770,342 + -0.8
770,343 - -2.1
770,512 + -0.1
770,512 + -1.2
770,512 + -2.0
770,512 + -3.0
770,513 - -2.7
770,515 + -3.1
770,515 + -2.0
770,515 + -1.3
770,515 + -2.7
770,515 + -2.0
770,515 + -2.8
770,516 - -3.8
770,516 - -2.5
770,516 - -2.4
770,536 + -1.3
770,536 + -2.2
770,536 + -0.9
770,536 + -0.3
770,537 - -1.2
770,537 - -2.4
770,537 - -2.5
770,537 - -2.2
770,537 - -3.0
770,537 - -1.2
770,537 - -2.9
770,537 - -1.3
770,537 - -0.7
770,579 + -0.7
770,579 + -3.4
770,581 + -2.3
770,581 + -2.4
770,581 + -1.2
770,686 + Sama_0617 0.16 -4.1
770,687 - Sama_0617 0.16 -1.9
770,687 - Sama_0617 0.16 -2.2
770,687 - Sama_0617 0.16 +0.2
770,687 - Sama_0617 0.16 -2.3
770,738 - Sama_0617 0.25 -1.3
770,738 - Sama_0617 0.25 -3.2
770,772 + Sama_0617 0.31 -2.9
770,773 - Sama_0617 0.31 -1.7
770,773 - Sama_0617 0.31 -1.9
770,805 + Sama_0617 0.37 -1.8
770,805 + Sama_0617 0.37 -0.7
770,907 - Sama_0617 0.55 -2.2
770,919 - Sama_0617 0.57 -2.9
770,963 + Sama_0617 0.65 -3.6
770,964 - Sama_0617 0.65 -3.0
770,964 - Sama_0617 0.65 -3.0
770,964 - Sama_0617 0.65 -3.9
770,971 + Sama_0617 0.66 +0.1
770,992 + Sama_0617 0.70 -4.2
770,992 + Sama_0617 0.70 -1.9
770,992 + Sama_0617 0.70 -3.2
770,993 - Sama_0617 0.70 -0.9
771,051 - Sama_0617 0.80 -2.0
771,069 + Sama_0617 0.83 -3.0
771,070 - Sama_0617 0.83 +0.7
771,070 - Sama_0617 0.83 -2.2
771,077 + Sama_0617 0.85 -3.3
771,078 - Sama_0617 0.85 -3.3
771,162 + -2.2
771,232 + +0.4
771,233 - -1.5
771,236 + -1.3
771,236 + -1.7
771,237 - -2.6
771,237 - -0.7
771,267 - -2.6
771,291 + -1.3
771,291 + -1.8
771,292 - -1.3
771,292 - -2.7
771,298 + -2.5
771,298 + -1.8
771,299 - -0.8
771,299 - -0.7
771,299 - -1.7
771,299 - -1.1
771,299 - -0.7
771,455 + Sama_0618 0.12 -2.0
771,456 - Sama_0618 0.12 -0.3
771,513 + Sama_0618 0.16 -1.8
771,513 + Sama_0618 0.16 -0.7
771,514 - Sama_0618 0.16 -0.7
771,576 + Sama_0618 0.20 -2.8
771,576 + Sama_0618 0.20 +0.7
771,624 + Sama_0618 0.23 -1.7
771,624 + Sama_0618 0.23 -0.9
771,625 - Sama_0618 0.23 -2.9
771,780 + Sama_0618 0.33 -3.5
771,889 + Sama_0618 0.40 -1.3
771,896 + Sama_0618 0.41 -2.4
771,896 + Sama_0618 0.41 -2.0
771,897 - Sama_0618 0.41 -2.4
771,897 - Sama_0618 0.41 -2.0
771,897 - Sama_0618 0.41 -3.3
771,897 - Sama_0618 0.41 -2.0
771,897 - Sama_0618 0.41 -2.5
771,903 - Sama_0618 0.41 -1.5
771,940 + Sama_0618 0.43 -3.6
771,940 + Sama_0618 0.43 -1.7
771,940 + Sama_0618 0.43 -1.3
771,951 + Sama_0618 0.44 -0.7
771,951 + Sama_0618 0.44 -2.3
771,963 + Sama_0618 0.45 -1.4
772,027 - Sama_0618 0.49 -0.6
772,027 - Sama_0618 0.49 -1.0
772,027 - Sama_0618 0.49 -2.8
772,090 + Sama_0618 0.53 -2.0

Or see this region's nucleotide sequence