Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0504 and Sama_0505 are separated by 133 nucleotides Sama_0505 and Sama_0506 are separated by 71 nucleotides
Sama_0504: Sama_0504 - hypothetical protein (RefSeq), at 617,948 to 619,003
_0504
Sama_0505: Sama_0505 - ATP-dependent protease La (RefSeq), at 619,137 to 619,712
_0505
Sama_0506: Sama_0506 - pseudouridine synthase (RefSeq), at 619,784 to 620,713
_0506
Position (kb) 619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 618.198 kb on - strand, within Sama_0504 at 618.218 kb on + strand, within Sama_0504 at 618.218 kb on + strand, within Sama_0504 at 618.219 kb on - strand, within Sama_0504 at 618.219 kb on - strand, within Sama_0504 at 618.220 kb on + strand, within Sama_0504 at 618.221 kb on - strand, within Sama_0504 at 618.233 kb on + strand, within Sama_0504 at 618.234 kb on - strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.280 kb on + strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.281 kb on - strand, within Sama_0504 at 618.375 kb on + strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.376 kb on - strand, within Sama_0504 at 618.528 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.650 kb on + strand, within Sama_0504 at 618.651 kb on - strand, within Sama_0504 at 618.651 kb on - strand, within Sama_0504 at 618.671 kb on + strand, within Sama_0504 at 618.716 kb on + strand, within Sama_0504 at 618.717 kb on - strand, within Sama_0504 at 618.757 kb on + strand, within Sama_0504 at 618.758 kb on - strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.791 kb on + strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.792 kb on - strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.796 kb on + strand, within Sama_0504 at 618.797 kb on - strand, within Sama_0504 at 618.797 kb on - strand, within Sama_0504 at 618.874 kb on + strand, within Sama_0504 at 618.875 kb on - strand, within Sama_0504 at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.973 kb on + strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.974 kb on - strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.975 kb on + strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.976 kb on - strand at 618.977 kb on - strand at 619.028 kb on + strand at 619.028 kb on + strand at 619.028 kb on + strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.029 kb on - strand at 619.102 kb on + strand at 619.102 kb on + strand at 619.102 kb on + strand at 619.103 kb on - strand at 619.103 kb on - strand at 619.108 kb on + strand at 619.108 kb on + strand at 619.108 kb on + strand at 619.109 kb on - strand at 619.109 kb on - strand at 619.133 kb on + strand at 619.134 kb on - strand at 619.159 kb on + strand at 619.177 kb on + strand at 619.177 kb on + strand at 619.177 kb on + strand at 619.178 kb on - strand at 619.225 kb on - strand, within Sama_0505 at 619.225 kb on - strand, within Sama_0505 at 619.309 kb on - strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.370 kb on + strand, within Sama_0505 at 619.371 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.422 kb on - strand, within Sama_0505 at 619.524 kb on + strand, within Sama_0505 at 619.524 kb on + strand, within Sama_0505 at 619.554 kb on + strand, within Sama_0505 at 619.620 kb on + strand, within Sama_0505 at 619.620 kb on + strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.621 kb on - strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.646 kb on + strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.647 kb on - strand, within Sama_0505 at 619.691 kb on + strand at 619.691 kb on + strand at 619.691 kb on + strand at 619.692 kb on - strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.694 kb on + strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.695 kb on - strand at 619.738 kb on + strand at 619.751 kb on + strand at 619.752 kb on - strand at 619.752 kb on - strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.826 kb on + strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.827 kb on - strand at 619.864 kb on - strand at 619.864 kb on - strand at 619.895 kb on - strand, within Sama_0506 at 620.000 kb on + strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.001 kb on - strand, within Sama_0506 at 620.003 kb on + strand, within Sama_0506 at 620.003 kb on + strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.004 kb on - strand, within Sama_0506 at 620.007 kb on - strand, within Sama_0506 at 620.007 kb on - strand, within Sama_0506 at 620.052 kb on + strand, within Sama_0506 at 620.053 kb on - strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.071 kb on + strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.072 kb on - strand, within Sama_0506 at 620.120 kb on - strand, within Sama_0506 at 620.120 kb on - strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.123 kb on + strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.124 kb on - strand, within Sama_0506 at 620.219 kb on - strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.255 kb on + strand, within Sama_0506 at 620.256 kb on - strand, within Sama_0506 at 620.284 kb on - strand, within Sama_0506 at 620.374 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.418 kb on + strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.419 kb on - strand, within Sama_0506 at 620.484 kb on + strand, within Sama_0506 at 620.608 kb on + strand, within Sama_0506 at 620.609 kb on - strand, within Sama_0506 at 620.609 kb on - strand, within Sama_0506 at 620.619 kb on + strand, within Sama_0506 at 620.620 kb on - strand, within Sama_0506 at 620.647 kb on + strand at 620.648 kb on - strand at 620.711 kb on + strand at 620.711 kb on + strand at 620.712 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 618,198 - Sama_0504 0.24 -0.1 618,218 + Sama_0504 0.26 -0.6 618,218 + Sama_0504 0.26 +0.4 618,219 - Sama_0504 0.26 -1.3 618,219 - Sama_0504 0.26 -0.4 618,220 + Sama_0504 0.26 -0.5 618,221 - Sama_0504 0.26 -1.9 618,233 + Sama_0504 0.27 -1.8 618,234 - Sama_0504 0.27 -0.2 618,280 + Sama_0504 0.31 -1.2 618,280 + Sama_0504 0.31 -0.1 618,280 + Sama_0504 0.31 -1.1 618,280 + Sama_0504 0.31 -2.1 618,280 + Sama_0504 0.31 -1.0 618,281 - Sama_0504 0.32 -0.6 618,281 - Sama_0504 0.32 -0.7 618,281 - Sama_0504 0.32 -0.8 618,375 + Sama_0504 0.40 +0.9 618,376 - Sama_0504 0.41 +0.2 618,376 - Sama_0504 0.41 -0.6 618,376 - Sama_0504 0.41 -2.2 618,528 + Sama_0504 0.55 -1.0 618,650 + Sama_0504 0.66 -1.9 618,650 + Sama_0504 0.66 -0.6 618,650 + Sama_0504 0.66 +0.2 618,650 + Sama_0504 0.66 -0.7 618,650 + Sama_0504 0.66 +0.7 618,651 - Sama_0504 0.67 -1.4 618,651 - Sama_0504 0.67 -0.4 618,671 + Sama_0504 0.68 +0.5 618,716 + Sama_0504 0.73 -0.1 618,717 - Sama_0504 0.73 -0.5 618,757 + Sama_0504 0.77 -0.4 618,758 - Sama_0504 0.77 -2.1 618,791 + Sama_0504 0.80 +1.3 618,791 + Sama_0504 0.80 +0.6 618,791 + Sama_0504 0.80 +0.4 618,791 + Sama_0504 0.80 -0.4 618,792 - Sama_0504 0.80 -0.2 618,792 - Sama_0504 0.80 -2.6 618,792 - Sama_0504 0.80 +0.1 618,796 + Sama_0504 0.80 -0.0 618,796 + Sama_0504 0.80 -0.3 618,796 + Sama_0504 0.80 -0.4 618,796 + Sama_0504 0.80 +0.0 618,797 - Sama_0504 0.80 +2.7 618,797 - Sama_0504 0.80 +0.8 618,874 + Sama_0504 0.88 -1.6 618,875 - Sama_0504 0.88 +0.7 618,973 + +0.1 618,973 + -1.1 618,973 + -0.9 618,973 + +1.1 618,973 + +0.2 618,973 + +0.8 618,973 + -0.6 618,973 + -0.2 618,973 + +0.4 618,973 + -0.8 618,973 + -1.6 618,973 + -2.4 618,973 + -0.2 618,973 + +0.4 618,973 + -1.5 618,973 + +0.8 618,973 + -0.1 618,973 + -0.4 618,973 + +0.7 618,973 + -1.3 618,974 - +0.6 618,974 - -0.0 618,974 - -0.1 618,974 - -0.8 618,974 - -2.6 618,974 - -1.8 618,974 - -2.0 618,974 - +0.7 618,974 - -0.4 618,974 - -0.2 618,974 - +0.4 618,974 - -0.1 618,974 - +1.7 618,974 - -0.4 618,974 - -1.0 618,974 - +0.1 618,974 - +1.1 618,974 - -0.4 618,974 - -0.4 618,974 - -1.5 618,974 - +0.1 618,974 - -0.5 618,974 - -0.8 618,974 - -2.3 618,975 + -0.4 618,975 + -0.4 618,975 + -1.6 618,975 + +0.5 618,976 - -0.2 618,976 - -0.6 618,976 - +0.2 618,976 - -0.8 618,976 - +0.4 618,976 - -1.3 618,976 - +0.5 618,977 - -2.0 619,028 + -0.1 619,028 + +0.7 619,028 + +0.2 619,029 - -0.7 619,029 - -1.0 619,029 - +0.5 619,029 - +0.4 619,029 - -2.1 619,102 + -1.1 619,102 + +0.0 619,102 + -1.5 619,103 - -0.7 619,103 - -1.2 619,108 + -1.2 619,108 + +0.7 619,108 + +0.7 619,109 - -0.1 619,109 - +0.8 619,133 + -0.2 619,134 - -0.4 619,159 + -1.1 619,177 + -0.3 619,177 + -0.5 619,177 + +0.0 619,178 - -0.1 619,225 - Sama_0505 0.15 +0.5 619,225 - Sama_0505 0.15 -1.0 619,309 - Sama_0505 0.30 -1.1 619,370 + Sama_0505 0.40 +1.9 619,370 + Sama_0505 0.40 -1.4 619,370 + Sama_0505 0.40 -0.4 619,371 - Sama_0505 0.41 +0.4 619,422 - Sama_0505 0.49 +0.5 619,422 - Sama_0505 0.49 -0.3 619,422 - Sama_0505 0.49 +0.3 619,422 - Sama_0505 0.49 -0.6 619,524 + Sama_0505 0.67 -0.4 619,524 + Sama_0505 0.67 -1.0 619,554 + Sama_0505 0.72 -0.9 619,620 + Sama_0505 0.84 -2.1 619,620 + Sama_0505 0.84 +1.7 619,621 - Sama_0505 0.84 +1.0 619,621 - Sama_0505 0.84 -0.3 619,621 - Sama_0505 0.84 +1.0 619,621 - Sama_0505 0.84 +0.4 619,621 - Sama_0505 0.84 -0.0 619,621 - Sama_0505 0.84 -1.3 619,646 + Sama_0505 0.88 -1.3 619,646 + Sama_0505 0.88 -0.6 619,646 + Sama_0505 0.88 -0.8 619,647 - Sama_0505 0.89 +0.2 619,647 - Sama_0505 0.89 -1.1 619,647 - Sama_0505 0.89 -0.9 619,691 + -0.4 619,691 + -0.8 619,691 + -1.5 619,692 - +0.3 619,694 + -0.2 619,694 + +0.2 619,694 + +3.0 619,694 + -0.5 619,695 - +0.3 619,695 - +0.9 619,695 - -2.1 619,695 - -2.8 619,695 - -0.5 619,695 - -0.3 619,738 + -1.1 619,751 + -0.2 619,752 - +0.4 619,752 - -0.2 619,826 + -2.7 619,826 + +0.4 619,826 + +0.0 619,826 + +0.1 619,826 + +0.1 619,826 + -0.2 619,826 + +0.7 619,826 + +0.8 619,826 + -0.7 619,826 + +0.4 619,826 + -1.1 619,826 + -0.2 619,826 + +0.5 619,827 - +1.9 619,827 - -1.0 619,827 - +0.7 619,827 - -2.2 619,827 - +0.4 619,827 - +0.5 619,827 - +1.0 619,827 - +0.6 619,827 - +0.2 619,864 - -0.2 619,864 - +0.7 619,895 - Sama_0506 0.12 +0.5 620,000 + Sama_0506 0.23 +0.7 620,001 - Sama_0506 0.23 +0.8 620,001 - Sama_0506 0.23 -0.2 620,001 - Sama_0506 0.23 -0.4 620,003 + Sama_0506 0.24 +0.1 620,003 + Sama_0506 0.24 +1.7 620,004 - Sama_0506 0.24 -2.2 620,004 - Sama_0506 0.24 +1.7 620,004 - Sama_0506 0.24 +0.1 620,004 - Sama_0506 0.24 +0.6 620,004 - Sama_0506 0.24 -0.1 620,007 - Sama_0506 0.24 -1.3 620,007 - Sama_0506 0.24 -0.1 620,052 + Sama_0506 0.29 +0.5 620,053 - Sama_0506 0.29 +0.7 620,071 + Sama_0506 0.31 +0.7 620,071 + Sama_0506 0.31 +0.7 620,071 + Sama_0506 0.31 +0.3 620,071 + Sama_0506 0.31 +0.9 620,071 + Sama_0506 0.31 -1.2 620,071 + Sama_0506 0.31 +0.4 620,071 + Sama_0506 0.31 +1.0 620,071 + Sama_0506 0.31 -0.8 620,071 + Sama_0506 0.31 -0.5 620,071 + Sama_0506 0.31 -0.7 620,072 - Sama_0506 0.31 -2.4 620,072 - Sama_0506 0.31 -1.0 620,072 - Sama_0506 0.31 +0.5 620,072 - Sama_0506 0.31 -0.6 620,072 - Sama_0506 0.31 +0.4 620,072 - Sama_0506 0.31 +1.3 620,072 - Sama_0506 0.31 +0.0 620,072 - Sama_0506 0.31 +1.1 620,072 - Sama_0506 0.31 +0.6 620,072 - Sama_0506 0.31 -1.5 620,072 - Sama_0506 0.31 +1.0 620,072 - Sama_0506 0.31 -0.1 620,072 - Sama_0506 0.31 -0.9 620,072 - Sama_0506 0.31 +0.0 620,072 - Sama_0506 0.31 -0.0 620,072 - Sama_0506 0.31 +0.2 620,072 - Sama_0506 0.31 +0.5 620,120 - Sama_0506 0.36 -0.1 620,120 - Sama_0506 0.36 -0.1 620,123 + Sama_0506 0.36 -0.1 620,123 + Sama_0506 0.36 +0.6 620,123 + Sama_0506 0.36 -0.8 620,123 + Sama_0506 0.36 +1.5 620,123 + Sama_0506 0.36 +1.5 620,123 + Sama_0506 0.36 -0.8 620,123 + Sama_0506 0.36 +1.3 620,123 + Sama_0506 0.36 +0.7 620,124 - Sama_0506 0.37 +0.7 620,124 - Sama_0506 0.37 +0.6 620,124 - Sama_0506 0.37 +0.9 620,124 - Sama_0506 0.37 -0.9 620,124 - Sama_0506 0.37 -0.7 620,124 - Sama_0506 0.37 +0.6 620,124 - Sama_0506 0.37 +0.2 620,124 - Sama_0506 0.37 +0.2 620,219 - Sama_0506 0.47 -0.4 620,255 + Sama_0506 0.51 +0.5 620,255 + Sama_0506 0.51 -1.1 620,255 + Sama_0506 0.51 +0.2 620,256 - Sama_0506 0.51 -0.3 620,284 - Sama_0506 0.54 +0.5 620,374 + Sama_0506 0.63 +0.7 620,418 + Sama_0506 0.68 -1.1 620,418 + Sama_0506 0.68 +0.8 620,418 + Sama_0506 0.68 +0.6 620,419 - Sama_0506 0.68 +0.9 620,419 - Sama_0506 0.68 +0.3 620,419 - Sama_0506 0.68 -0.3 620,419 - Sama_0506 0.68 -0.1 620,419 - Sama_0506 0.68 +0.6 620,484 + Sama_0506 0.75 +0.4 620,608 + Sama_0506 0.89 +1.1 620,609 - Sama_0506 0.89 +2.4 620,609 - Sama_0506 0.89 +1.5 620,619 + Sama_0506 0.90 +0.7 620,620 - Sama_0506 0.90 +0.5 620,647 + +0.9 620,648 - -0.0 620,711 + +1.7 620,711 + -1.9 620,712 - -0.9
Or see this region's nucleotide sequence