Experiment: D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0120 and Sama_0121 are separated by 16 nucleotides Sama_0121 and Sama_0122 overlap by 17 nucleotides Sama_0122 and Sama_0123 overlap by 1 nucleotides
Sama_0120: Sama_0120 - molybdopterin biosynthesis MoeA protein, putative (RefSeq), at 133,572 to 135,371
_0120
Sama_0121: Sama_0121 - molybdopterin-guanine dinucleotide biosynthesis protein (RefSeq), at 135,388 to 135,978
_0121
Sama_0122: Sama_0122 - ABC transporter, ATP-binding protein (RefSeq), at 135,962 to 136,654
_0122
Sama_0123: Sama_0123 - ABC transporter, permease protein (RefSeq), at 136,654 to 137,361
_0123
Position (kb) 135
136 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 134.430 kb on - strand, within Sama_0120 at 134.430 kb on - strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.504 kb on + strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.505 kb on - strand, within Sama_0120 at 134.508 kb on + strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.509 kb on - strand, within Sama_0120 at 134.510 kb on - strand, within Sama_0120 at 134.706 kb on + strand, within Sama_0120 at 134.754 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.850 kb on - strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.851 kb on + strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.852 kb on - strand, within Sama_0120 at 134.891 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.916 kb on + strand, within Sama_0120 at 134.917 kb on - strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.972 kb on + strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 134.973 kb on - strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.006 kb on + strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.007 kb on - strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.029 kb on + strand, within Sama_0120 at 135.030 kb on - strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.039 kb on + strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.040 kb on - strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.050 kb on + strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.051 kb on - strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.187 kb on + strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.188 kb on - strand, within Sama_0120 at 135.207 kb on - strand at 135.252 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.316 kb on + strand at 135.317 kb on - strand at 135.317 kb on - strand at 135.334 kb on - strand at 135.409 kb on + strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.410 kb on - strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.418 kb on + strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.419 kb on - strand at 135.442 kb on + strand at 135.442 kb on + strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.443 kb on - strand at 135.498 kb on - strand, within Sama_0121 at 135.590 kb on + strand, within Sama_0121 at 135.591 kb on - strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.691 kb on + strand, within Sama_0121 at 135.734 kb on - strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.781 kb on + strand, within Sama_0121 at 135.782 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.804 kb on - strand, within Sama_0121 at 135.865 kb on - strand, within Sama_0121 at 135.901 kb on + strand, within Sama_0121 at 135.978 kb on + strand at 135.978 kb on + strand at 135.978 kb on + strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.979 kb on - strand at 135.980 kb on + strand at 136.045 kb on + strand, within Sama_0122 at 136.045 kb on + strand, within Sama_0122 at 136.046 kb on - strand, within Sama_0122 at 136.097 kb on + strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.098 kb on - strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.171 kb on + strand, within Sama_0122 at 136.178 kb on + strand, within Sama_0122 at 136.392 kb on + strand, within Sama_0122 at 136.410 kb on + strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.411 kb on - strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.475 kb on + strand, within Sama_0122 at 136.476 kb on - strand, within Sama_0122 at 136.499 kb on + strand, within Sama_0122 at 136.500 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.558 kb on - strand, within Sama_0122 at 136.601 kb on + strand at 136.601 kb on + strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.602 kb on - strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.666 kb on + strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.667 kb on - strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.707 kb on + strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.708 kb on - strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.710 kb on + strand at 136.711 kb on - strand at 136.744 kb on + strand, within Sama_0123 at 136.744 kb on + strand, within Sama_0123 at 136.767 kb on + strand, within Sama_0123 at 136.768 kb on - strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.797 kb on + strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.798 kb on - strand, within Sama_0123 at 136.800 kb on + strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.801 kb on - strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.811 kb on + strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.812 kb on - strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.924 kb on + strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123 at 136.925 kb on - strand, within Sama_0123
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.03125 mg/ml remove 134,430 - Sama_0120 0.48 +0.4 134,430 - Sama_0120 0.48 +0.2 134,504 + Sama_0120 0.52 +1.2 134,504 + Sama_0120 0.52 +0.8 134,504 + Sama_0120 0.52 +1.3 134,504 + Sama_0120 0.52 -0.1 134,504 + Sama_0120 0.52 -0.5 134,504 + Sama_0120 0.52 +0.4 134,505 - Sama_0120 0.52 +3.3 134,505 - Sama_0120 0.52 +0.7 134,505 - Sama_0120 0.52 +1.7 134,505 - Sama_0120 0.52 -1.0 134,505 - Sama_0120 0.52 +2.1 134,505 - Sama_0120 0.52 -0.5 134,505 - Sama_0120 0.52 -0.2 134,508 + Sama_0120 0.52 +0.3 134,509 - Sama_0120 0.52 -0.9 134,509 - Sama_0120 0.52 +0.1 134,510 - Sama_0120 0.52 +0.8 134,706 + Sama_0120 0.63 +0.3 134,754 - Sama_0120 0.66 +0.8 134,850 - Sama_0120 0.71 +0.9 134,850 - Sama_0120 0.71 +0.7 134,850 - Sama_0120 0.71 +0.3 134,850 - Sama_0120 0.71 +0.8 134,850 - Sama_0120 0.71 +1.0 134,850 - Sama_0120 0.71 +0.3 134,851 + Sama_0120 0.71 +0.7 134,851 + Sama_0120 0.71 -0.1 134,851 + Sama_0120 0.71 +0.6 134,851 + Sama_0120 0.71 -0.4 134,851 + Sama_0120 0.71 -0.0 134,851 + Sama_0120 0.71 +0.8 134,851 + Sama_0120 0.71 +0.1 134,851 + Sama_0120 0.71 +1.7 134,851 + Sama_0120 0.71 +0.8 134,851 + Sama_0120 0.71 +1.1 134,852 - Sama_0120 0.71 +0.7 134,852 - Sama_0120 0.71 -0.9 134,852 - Sama_0120 0.71 +0.3 134,852 - Sama_0120 0.71 -0.6 134,852 - Sama_0120 0.71 -0.6 134,852 - Sama_0120 0.71 +1.5 134,852 - Sama_0120 0.71 -1.0 134,852 - Sama_0120 0.71 -1.2 134,852 - Sama_0120 0.71 +1.2 134,852 - Sama_0120 0.71 +1.2 134,852 - Sama_0120 0.71 +0.4 134,852 - Sama_0120 0.71 -0.2 134,852 - Sama_0120 0.71 -0.3 134,852 - Sama_0120 0.71 +1.5 134,852 - Sama_0120 0.71 +0.8 134,852 - Sama_0120 0.71 +0.5 134,891 + Sama_0120 0.73 +1.2 134,916 + Sama_0120 0.75 +0.3 134,916 + Sama_0120 0.75 -0.3 134,916 + Sama_0120 0.75 -0.3 134,917 - Sama_0120 0.75 +0.1 134,972 + Sama_0120 0.78 +0.7 134,972 + Sama_0120 0.78 -1.5 134,972 + Sama_0120 0.78 -0.0 134,972 + Sama_0120 0.78 +0.7 134,973 - Sama_0120 0.78 +0.1 134,973 - Sama_0120 0.78 -1.2 134,973 - Sama_0120 0.78 +0.8 134,973 - Sama_0120 0.78 -0.2 135,006 + Sama_0120 0.80 +1.3 135,006 + Sama_0120 0.80 +0.1 135,006 + Sama_0120 0.80 +0.6 135,006 + Sama_0120 0.80 -0.7 135,007 - Sama_0120 0.80 +0.8 135,007 - Sama_0120 0.80 +1.0 135,029 + Sama_0120 0.81 +0.3 135,029 + Sama_0120 0.81 +0.4 135,030 - Sama_0120 0.81 +1.2 135,039 + Sama_0120 0.81 +1.0 135,039 + Sama_0120 0.81 +2.8 135,039 + Sama_0120 0.81 -1.1 135,040 - Sama_0120 0.82 +0.4 135,040 - Sama_0120 0.82 +0.3 135,050 + Sama_0120 0.82 +1.5 135,050 + Sama_0120 0.82 -0.9 135,051 - Sama_0120 0.82 +0.8 135,051 - Sama_0120 0.82 +1.1 135,051 - Sama_0120 0.82 -0.4 135,187 + Sama_0120 0.90 +1.1 135,187 + Sama_0120 0.90 +0.5 135,187 + Sama_0120 0.90 +0.0 135,187 + Sama_0120 0.90 +0.8 135,187 + Sama_0120 0.90 +0.8 135,187 + Sama_0120 0.90 -0.2 135,187 + Sama_0120 0.90 +0.7 135,187 + Sama_0120 0.90 +0.2 135,187 + Sama_0120 0.90 -0.3 135,188 - Sama_0120 0.90 +2.2 135,188 - Sama_0120 0.90 -0.2 135,188 - Sama_0120 0.90 +0.8 135,188 - Sama_0120 0.90 +0.4 135,188 - Sama_0120 0.90 -1.0 135,188 - Sama_0120 0.90 +1.3 135,188 - Sama_0120 0.90 +1.6 135,188 - Sama_0120 0.90 +0.3 135,188 - Sama_0120 0.90 -0.5 135,188 - Sama_0120 0.90 +0.7 135,207 - +0.9 135,252 + +0.5 135,316 + +0.1 135,316 + +1.3 135,316 + -0.0 135,317 - +2.8 135,317 - -0.1 135,334 - -1.7 135,409 + -1.7 135,410 - +1.1 135,410 - -1.3 135,410 - +0.4 135,418 + +0.5 135,418 + -1.4 135,418 + +1.5 135,418 + -0.2 135,418 + -0.5 135,419 - -0.0 135,419 - -0.5 135,419 - +1.1 135,419 - +0.8 135,442 + +1.6 135,442 + +0.2 135,443 - +0.2 135,443 - +0.4 135,443 - +0.8 135,498 - Sama_0121 0.19 -0.2 135,590 + Sama_0121 0.34 +1.0 135,591 - Sama_0121 0.34 -1.3 135,691 + Sama_0121 0.51 +2.8 135,691 + Sama_0121 0.51 +0.6 135,691 + Sama_0121 0.51 +0.3 135,691 + Sama_0121 0.51 +1.8 135,691 + Sama_0121 0.51 -0.0 135,734 - Sama_0121 0.59 +1.1 135,781 + Sama_0121 0.66 -1.0 135,781 + Sama_0121 0.66 -0.4 135,782 - Sama_0121 0.67 +0.8 135,804 - Sama_0121 0.70 +0.6 135,804 - Sama_0121 0.70 +0.1 135,865 - Sama_0121 0.81 +0.9 135,901 + Sama_0121 0.87 +1.5 135,978 + +0.9 135,978 + +2.4 135,978 + -0.1 135,979 - +0.2 135,979 - +2.3 135,979 - +0.5 135,979 - -1.0 135,979 - -0.2 135,979 - -0.4 135,979 - -0.5 135,979 - -2.2 135,979 - +0.1 135,979 - -1.3 135,979 - +0.9 135,980 + -0.2 136,045 + Sama_0122 0.12 +0.1 136,045 + Sama_0122 0.12 +0.3 136,046 - Sama_0122 0.12 +1.8 136,097 + Sama_0122 0.19 +0.4 136,098 - Sama_0122 0.20 +0.8 136,098 - Sama_0122 0.20 +0.3 136,171 + Sama_0122 0.30 +0.1 136,171 + Sama_0122 0.30 +0.4 136,178 + Sama_0122 0.31 +0.4 136,392 + Sama_0122 0.62 +1.2 136,410 + Sama_0122 0.65 +0.8 136,411 - Sama_0122 0.65 -0.2 136,411 - Sama_0122 0.65 +1.5 136,475 + Sama_0122 0.74 +0.2 136,475 + Sama_0122 0.74 -0.2 136,475 + Sama_0122 0.74 +0.1 136,476 - Sama_0122 0.74 +0.6 136,499 + Sama_0122 0.77 +1.0 136,500 - Sama_0122 0.78 +0.4 136,558 - Sama_0122 0.86 -0.1 136,558 - Sama_0122 0.86 +0.3 136,601 + +0.5 136,601 + -0.5 136,602 - +0.7 136,602 - +1.5 136,602 - -0.5 136,602 - +0.5 136,666 + +0.9 136,666 + +0.2 136,666 + +0.3 136,667 - +1.8 136,667 - -0.1 136,667 - +0.5 136,707 + +0.4 136,707 + -1.8 136,707 + +1.6 136,707 + +0.7 136,707 + +0.4 136,707 + +1.8 136,708 - +0.7 136,708 - +1.2 136,708 - +0.2 136,708 - +2.1 136,708 - +0.0 136,710 + +1.8 136,710 + +0.7 136,710 + +1.0 136,710 + +2.1 136,710 + +1.7 136,710 + -0.4 136,711 - -0.2 136,744 + Sama_0123 0.13 +0.2 136,744 + Sama_0123 0.13 +0.6 136,767 + Sama_0123 0.16 +0.5 136,768 - Sama_0123 0.16 +0.8 136,797 + Sama_0123 0.20 +0.1 136,797 + Sama_0123 0.20 +0.3 136,797 + Sama_0123 0.20 -0.1 136,797 + Sama_0123 0.20 +0.2 136,798 - Sama_0123 0.20 -0.3 136,798 - Sama_0123 0.20 -0.1 136,800 + Sama_0123 0.21 +0.2 136,801 - Sama_0123 0.21 -1.1 136,801 - Sama_0123 0.21 +0.8 136,801 - Sama_0123 0.21 +0.0 136,801 - Sama_0123 0.21 +0.6 136,811 + Sama_0123 0.22 +1.3 136,811 + Sama_0123 0.22 +1.2 136,811 + Sama_0123 0.22 -0.1 136,811 + Sama_0123 0.22 +1.0 136,811 + Sama_0123 0.22 +0.5 136,812 - Sama_0123 0.22 +1.5 136,812 - Sama_0123 0.22 +0.1 136,812 - Sama_0123 0.22 +1.8 136,812 - Sama_0123 0.22 -1.0 136,812 - Sama_0123 0.22 +0.1 136,812 - Sama_0123 0.22 +1.4 136,924 + Sama_0123 0.38 +0.1 136,924 + Sama_0123 0.38 +0.5 136,924 + Sama_0123 0.38 +1.3 136,924 + Sama_0123 0.38 +0.1 136,924 + Sama_0123 0.38 +0.8 136,925 - Sama_0123 0.38 -1.0 136,925 - Sama_0123 0.38 +0.0 136,925 - Sama_0123 0.38 -0.2 136,925 - Sama_0123 0.38 +0.8 136,925 - Sama_0123 0.38 +1.5 136,925 - Sama_0123 0.38 +1.6
Or see this region's nucleotide sequence