Experiment: A22 0.01 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_A0025 and SOA0026 are separated by 76 nucleotides SOA0026 and SO_A0028 are separated by 70 nucleotides
SOA0024: SOA0024 - ISSod1, transposase OrfB (NCBI ptt file), at 19,523 to 20,332
SOA0024
SO_A0025: SO_A0025 - ISSod1, transposase OrfA (NCBI), at 19,523 to 20,682
_A0025
SOA0026: SOA0026 - site-specific recombinase, resolvase family (NCBI ptt file), at 20,759 to 21,067
SOA0026
SO_A0028: SO_A0028 - ISSod1, transposase OrfA (NCBI), at 21,138 to 22,297
_A0028
SOA0029: SOA0029 - ISSod1, transposase OrfB (NCBI ptt file), at 21,488 to 22,297
SOA0029
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1 at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.735 kb on + strand at 20.745 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.750 kb on + strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.758 kb on - strand at 20.778 kb on - strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.784 kb on + strand at 20.785 kb on + strand at 20.792 kb on - strand, within SOA0026 at 20.793 kb on + strand, within SOA0026 at 20.801 kb on - strand, within SOA0026 at 20.808 kb on + strand, within SOA0026 at 20.816 kb on - strand, within SOA0026 at 20.819 kb on + strand, within SOA0026 at 20.822 kb on + strand, within SOA0026 at 20.827 kb on + strand, within SOA0026 at 20.827 kb on + strand, within SOA0026 at 20.835 kb on - strand, within SOA0026 at 20.837 kb on + strand, within SOA0026 at 20.837 kb on + strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.845 kb on - strand, within SOA0026 at 20.872 kb on + strand, within SOA0026 at 20.916 kb on - strand, within SOA0026 at 20.970 kb on + strand, within SOA0026 at 20.978 kb on - strand, within SOA0026 at 20.978 kb on - strand, within SOA0026 at 21.009 kb on + strand, within SOA0026 at 21.017 kb on - strand, within SOA0026 at 21.064 kb on + strand at 21.080 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.085 kb on - strand at 21.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction A22 0.01 mg/ml remove 20,735 + -0.1 20,735 + +0.6 20,735 + -0.7 20,735 + -0.5 20,735 + +0.9 20,735 + -0.2 20,735 + +0.5 20,735 + -0.5 20,735 + +0.5 20,735 + +0.3 20,745 + -0.1 20,750 + +0.0 20,750 + -0.5 20,750 + +1.4 20,750 + -0.0 20,750 + +0.3 20,750 + -0.2 20,750 + -0.4 20,750 + +0.2 20,750 + -0.0 20,750 + -0.1 20,750 + -0.1 20,750 + +0.1 20,750 + +0.2 20,750 + -0.5 20,750 + -0.1 20,758 - -0.1 20,758 - -1.2 20,758 - +0.2 20,758 - -0.9 20,758 - -0.9 20,758 - +0.0 20,758 - +0.0 20,758 - -0.6 20,758 - -0.1 20,758 - -0.3 20,758 - -0.3 20,778 - +0.7 20,784 + -0.3 20,784 + +0.6 20,784 + -1.5 20,784 + +0.7 20,784 + +0.1 20,785 + -0.1 20,792 - SOA0026 0.11 +0.2 20,793 + SOA0026 0.11 -0.2 20,801 - SOA0026 0.14 +0.5 20,808 + SOA0026 0.16 +0.8 20,816 - SOA0026 0.18 -0.1 20,819 + SOA0026 0.19 +0.0 20,822 + SOA0026 0.20 -0.1 20,827 + SOA0026 0.22 +0.9 20,827 + SOA0026 0.22 +0.8 20,835 - SOA0026 0.25 +0.4 20,837 + SOA0026 0.25 -0.1 20,837 + SOA0026 0.25 +0.1 20,845 - SOA0026 0.28 +0.2 20,845 - SOA0026 0.28 +0.8 20,845 - SOA0026 0.28 +1.4 20,872 + SOA0026 0.37 -0.5 20,916 - SOA0026 0.51 +0.6 20,970 + SOA0026 0.68 +0.1 20,978 - SOA0026 0.71 -0.2 20,978 - SOA0026 0.71 +1.2 21,009 + SOA0026 0.81 +0.3 21,017 - SOA0026 0.83 +0.3 21,064 + -0.1 21,080 - -0.6 21,085 - -0.9 21,085 - +0.1 21,085 - -0.5 21,085 - -0.8 21,085 - +0.5 21,085 - +0.2 21,086 - -0.2
Or see this region's nucleotide sequence