Strain Fitness in Shewanella oneidensis MR-1 around SO3900

Experiment: A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.01 mg/ml
4,048,832	-				+0.3
4,048,904	+		SO3900	0.17	+0.5
4,049,020	-		SO3900	0.38	-0.3
4,049,130	-		SO3900	0.57	-1.6
4,049,140	-		SO3900	0.58	-1.6
4,049,140	-		SO3900	0.58	-0.6
4,049,220	+		SO3900	0.72	-0.3
4,049,257	-		SO3900	0.79	+0.0
4,049,366	+				+0.2
4,049,465	-				-0.8
4,049,470	-				-0.6
4,049,470	-				-1.9
4,049,470	-				-2.4
4,049,485	+				-0.1
4,049,493	-	icc	SO3901	0.10	-0.7
4,049,493	-	icc	SO3901	0.10	-1.0
4,049,565	+	icc	SO3901	0.19	-0.5
4,049,565	+	icc	SO3901	0.19	-2.7
4,049,573	-	icc	SO3901	0.20	-2.2
4,049,661	-	icc	SO3901	0.30	-1.0
4,049,661	-	icc	SO3901	0.30	-1.2
4,049,698	+	icc	SO3901	0.35	-0.7
4,049,712	+	icc	SO3901	0.37	-0.3
4,049,712	+	icc	SO3901	0.37	-1.8
4,049,720	-	icc	SO3901	0.38	-2.0
4,049,720	-	icc	SO3901	0.38	-2.4
4,049,720	-	icc	SO3901	0.38	-0.9
4,050,191	-				-1.2
4,050,263	-				-1.0
4,050,286	-				-1.0
4,050,348	-		SO3902	0.20	+0.3
4,050,366	+		SO3902	0.24	-2.4
4,050,366	+		SO3902	0.24	-0.5
4,050,366	+		SO3902	0.24	-1.8
4,050,366	+		SO3902	0.24	-0.5
4,050,366	+		SO3902	0.24	-2.7
4,050,366	+		SO3902	0.24	-2.0
4,050,366	+		SO3902	0.24	-3.0
4,050,366	+		SO3902	0.24	-0.6
4,050,366	+		SO3902	0.24	-2.0
4,050,366	+		SO3902	0.24	+0.3
4,050,366	+		SO3902	0.24	-1.3
4,050,366	+		SO3902	0.24	-2.3
4,050,374	-		SO3902	0.26	-1.0
4,050,374	-		SO3902	0.26	-0.6
4,050,374	-		SO3902	0.26	+0.8
4,050,374	-		SO3902	0.26	-0.5
4,050,374	-		SO3902	0.26	-0.0
4,050,374	-		SO3902	0.26	+0.8
4,050,374	-		SO3902	0.26	-0.6
4,050,374	-		SO3902	0.26	-1.3
4,050,374	-		SO3902	0.26	+0.3
4,050,374	-		SO3902	0.26	-1.3
4,050,374	-		SO3902	0.26	+0.1