Strain Fitness in Shewanella oneidensis MR-1 around SO_2937

Experiment: A22 0.01 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.01 mg/ml
3,072,735	+		SO2936	0.10	+0.1
3,072,857	-		SO2936	0.23	+0.1
3,072,866	+		SO2936	0.24	-0.2
3,072,874	-		SO2936	0.24	-0.2
3,072,874	-		SO2936	0.24	-0.5
3,072,996	-		SO2936	0.37	-0.1
3,073,086	-		SO2936	0.46	-0.8
3,073,208	+		SO2936	0.59	+0.3
3,073,215	-		SO2936	0.59	+0.2
3,073,216	-		SO2936	0.60	+1.0
3,073,240	-		SO2936	0.62	+0.0
3,073,292	-		SO2936	0.67	-0.5
3,073,297	-		SO2936	0.68	-0.3
3,073,506	-		SO2936	0.89	-1.2
3,073,537	+				+0.1
3,073,596	+				-0.1
3,073,610	+				-0.4
3,073,754	+				-0.2
3,073,759	+				+0.1
3,073,773	-				+0.1
3,073,809	-				+0.2
3,073,811	-		SO_2937	0.10	+0.5
3,073,827	+		SO_2937	0.12	+0.6
3,073,827	+		SO_2937	0.12	-0.8
3,073,893	+		SO_2937	0.20	-0.2
3,074,033	-		SO_2937	0.36	+0.0
3,074,091	-		SO_2937	0.42	-0.2
3,074,091	-		SO_2937	0.42	+0.4
3,074,172	+		SO_2937	0.51	-0.6
3,074,180	-		SO_2937	0.52	+0.2
3,074,180	-		SO_2937	0.52	+0.0
3,074,266	-		SO_2937	0.62	-0.5
3,074,266	-		SO_2937	0.62	-0.8
3,074,287	+		SO_2937	0.64	+0.1
3,074,291	-		SO_2937	0.65	+0.2
3,074,325	+		SO_2937	0.69	-0.5
3,074,351	-		SO_2937	0.72	+0.2
3,074,352	-		SO_2937	0.72	+0.9
3,074,386	+		SO_2937	0.76	-0.1
3,074,517	+				+1.3
3,074,549	-				-0.5
3,074,558	+				-0.7
3,074,561	-				-0.0
3,074,568	+				-0.2
3,074,680	+				-0.2
3,074,683	+				-0.5
3,074,688	-				-0.4
3,074,701	-				-0.6
3,074,730	+				+0.4
3,074,730	+				-0.4
3,074,738	-				-1.3
3,074,738	-				-0.1
3,074,738	-				-0.0
3,074,738	-				-0.7
3,074,873	+				-0.4
3,074,886	-				+0.1
3,074,908	+				-0.0
3,074,996	+		SO2938	0.24	-0.7
3,075,071	+		SO2938	0.38	-1.0
3,075,071	+		SO2938	0.38	-1.2
3,075,071	+		SO2938	0.38	-0.3
3,075,071	+		SO2938	0.38	+0.8
3,075,132	-		SO2938	0.49	-0.7
3,075,154	-		SO2938	0.53	-0.1
3,075,176	+		SO2938	0.57	-0.4
3,075,206	+		SO2938	0.63	-0.3
3,075,297	-		SO2938	0.79	-0.9
3,075,307	-		SO2938	0.81	-0.4
3,075,307	-		SO2938	0.81	-0.6
3,075,333	-		SO2938	0.86	+0.2
3,075,446	+				-0.1
3,075,446	+				-0.1
3,075,524	-		SO2939	0.16	-0.2
3,075,541	-		SO2939	0.19	-0.4
3,075,594	+		SO2939	0.26	-0.2
3,075,596	+		SO2939	0.26	-0.0
3,075,596	+		SO2939	0.26	-0.5
3,075,597	-		SO2939	0.26	+0.3
3,075,597	-		SO2939	0.26	-1.4