Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07960

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07940 and PGA1_c07950 are separated by 149 nucleotidesPGA1_c07950 and PGA1_c07960 are separated by 1 nucleotidesPGA1_c07960 and PGA1_c07970 are separated by 58 nucleotides PGA1_c07940: PGA1_c07940 - Uncharacterized protein conserved in bacteria, at 824,056 to 825,033 _c07940 PGA1_c07950: PGA1_c07950 - hypothetical protein, at 825,183 to 825,677 _c07950 PGA1_c07960: PGA1_c07960 - putative integral membrane protein, at 825,679 to 827,196 _c07960 PGA1_c07970: PGA1_c07970 - putative membrane transport protein, at 827,255 to 828,187 _c07970 Position (kb) 825 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1at 824.751 kb on - strand, within PGA1_c07940at 824.755 kb on + strand, within PGA1_c07940at 824.760 kb on + strand, within PGA1_c07940at 824.776 kb on + strand, within PGA1_c07940at 824.937 kb on + strandat 824.952 kb on - strandat 825.034 kb on + strandat 825.050 kb on - strandat 825.334 kb on - strand, within PGA1_c07950at 825.397 kb on - strand, within PGA1_c07950at 825.443 kb on + strand, within PGA1_c07950at 825.631 kb on + strandat 825.664 kb on + strandat 825.908 kb on + strand, within PGA1_c07960at 825.916 kb on - strand, within PGA1_c07960at 825.992 kb on - strand, within PGA1_c07960at 825.992 kb on - strand, within PGA1_c07960at 826.040 kb on + strand, within PGA1_c07960at 826.057 kb on - strand, within PGA1_c07960at 826.080 kb on + strand, within PGA1_c07960at 826.098 kb on + strand, within PGA1_c07960at 826.188 kb on + strand, within PGA1_c07960at 826.218 kb on - strand, within PGA1_c07960at 826.220 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.224 kb on + strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.232 kb on - strand, within PGA1_c07960at 826.309 kb on - strand, within PGA1_c07960at 826.309 kb on - strand, within PGA1_c07960at 826.334 kb on - strand, within PGA1_c07960at 826.407 kb on + strand, within PGA1_c07960at 826.520 kb on + strand, within PGA1_c07960at 826.525 kb on + strand, within PGA1_c07960at 826.538 kb on - strand, within PGA1_c07960at 826.886 kb on + strand, within PGA1_c07960at 826.963 kb on + strand, within PGA1_c07960at 826.963 kb on + strand, within PGA1_c07960at 826.963 kb on + strand, within PGA1_c07960at 826.971 kb on - strand, within PGA1_c07960at 826.978 kb on + strand, within PGA1_c07960at 826.992 kb on - strand, within PGA1_c07960at 827.006 kb on + strand, within PGA1_c07960at 827.112 kb on - strandat 827.222 kb on - strandat 827.280 kb on - strandat 827.280 kb on - strandat 827.284 kb on - strandat 827.290 kb on + strandat 827.326 kb on + strandat 827.363 kb on + strand, within PGA1_c07970at 827.399 kb on + strand, within PGA1_c07970at 827.409 kb on + strand, within PGA1_c07970at 827.409 kb on - strand, within PGA1_c07970at 827.412 kb on - strand, within PGA1_c07970at 827.431 kb on + strand, within PGA1_c07970at 827.459 kb on - strand, within PGA1_c07970at 827.549 kb on - strand, within PGA1_c07970at 827.621 kb on + strand, within PGA1_c07970at 827.628 kb on + strand, within PGA1_c07970at 827.628 kb on + strand, within PGA1_c07970at 827.634 kb on - strand, within PGA1_c07970at 827.636 kb on + strand, within PGA1_c07970at 827.636 kb on - strand, within PGA1_c07970at 827.648 kb on + strand, within PGA1_c07970at 827.648 kb on + strand, within PGA1_c07970at 827.648 kb on + strand, within PGA1_c07970at 827.666 kb on + strand, within PGA1_c07970at 827.684 kb on - strand, within PGA1_c07970at 827.744 kb on + strand, within PGA1_c07970at 827.947 kb on - strand, within PGA1_c07970at 827.950 kb on + strand, within PGA1_c07970at 827.950 kb on + strand, within PGA1_c07970at 827.958 kb on - strand, within PGA1_c07970at 827.983 kb on - strand, within PGA1_c07970at 827.998 kb on + strand, within PGA1_c07970at 828.006 kb on - strand, within PGA1_c07970at 828.119 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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824,751 - PGA1_c07940 0.71 -0.6
824,755 + PGA1_c07940 0.71 +1.6
824,760 + PGA1_c07940 0.72 +0.1
824,776 + PGA1_c07940 0.74 -1.3
824,937 + -0.4
824,952 - -1.6
825,034 + -0.6
825,050 - +0.2
825,334 - PGA1_c07950 0.31 -1.4
825,397 - PGA1_c07950 0.43 -1.2
825,443 + PGA1_c07950 0.53 -2.4
825,631 + +0.4
825,664 + -0.2
825,908 + PGA1_c07960 0.15 -0.4
825,916 - PGA1_c07960 0.16 -0.8
825,992 - PGA1_c07960 0.21 -0.6
825,992 - PGA1_c07960 0.21 -1.2
826,040 + PGA1_c07960 0.24 -1.0
826,057 - PGA1_c07960 0.25 -0.9
826,080 + PGA1_c07960 0.26 -1.6
826,098 + PGA1_c07960 0.28 -0.1
826,188 + PGA1_c07960 0.34 +0.5
826,218 - PGA1_c07960 0.36 -0.4
826,220 + PGA1_c07960 0.36 -1.1
826,224 + PGA1_c07960 0.36 +1.0
826,224 + PGA1_c07960 0.36 -1.2
826,224 + PGA1_c07960 0.36 -1.2
826,224 + PGA1_c07960 0.36 -0.5
826,232 - PGA1_c07960 0.36 -0.8
826,232 - PGA1_c07960 0.36 -0.6
826,232 - PGA1_c07960 0.36 -1.0
826,232 - PGA1_c07960 0.36 -0.2
826,309 - PGA1_c07960 0.42 -0.7
826,309 - PGA1_c07960 0.42 -2.0
826,334 - PGA1_c07960 0.43 -0.4
826,407 + PGA1_c07960 0.48 -2.1
826,520 + PGA1_c07960 0.55 +0.0
826,525 + PGA1_c07960 0.56 +0.6
826,538 - PGA1_c07960 0.57 -0.4
826,886 + PGA1_c07960 0.80 +0.7
826,963 + PGA1_c07960 0.85 -0.8
826,963 + PGA1_c07960 0.85 -2.0
826,963 + PGA1_c07960 0.85 -1.0
826,971 - PGA1_c07960 0.85 -0.0
826,978 + PGA1_c07960 0.86 +0.2
826,992 - PGA1_c07960 0.86 -0.8
827,006 + PGA1_c07960 0.87 -0.8
827,112 - +1.1
827,222 - -0.1
827,280 - -0.0
827,280 - +0.2
827,284 - -1.6
827,290 + +0.3
827,326 + -0.8
827,363 + PGA1_c07970 0.12 -1.8
827,399 + PGA1_c07970 0.15 -1.7
827,409 + PGA1_c07970 0.17 -1.2
827,409 - PGA1_c07970 0.17 -2.9
827,412 - PGA1_c07970 0.17 +0.4
827,431 + PGA1_c07970 0.19 +1.1
827,459 - PGA1_c07970 0.22 -1.6
827,549 - PGA1_c07970 0.32 -1.2
827,621 + PGA1_c07970 0.39 -0.7
827,628 + PGA1_c07970 0.40 -2.4
827,628 + PGA1_c07970 0.40 -0.8
827,634 - PGA1_c07970 0.41 -0.0
827,636 + PGA1_c07970 0.41 -1.0
827,636 - PGA1_c07970 0.41 -1.0
827,648 + PGA1_c07970 0.42 +0.3
827,648 + PGA1_c07970 0.42 -0.4
827,648 + PGA1_c07970 0.42 +0.4
827,666 + PGA1_c07970 0.44 -0.8
827,684 - PGA1_c07970 0.46 -0.1
827,744 + PGA1_c07970 0.52 +0.8
827,947 - PGA1_c07970 0.74 -0.5
827,950 + PGA1_c07970 0.74 -1.4
827,950 + PGA1_c07970 0.74 +1.2
827,958 - PGA1_c07970 0.75 -2.1
827,983 - PGA1_c07970 0.78 -0.9
827,998 + PGA1_c07970 0.80 -0.8
828,006 - PGA1_c07970 0.80 -0.0
828,119 + +0.1

Or see this region's nucleotide sequence