Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07730 and PGA1_c07740 overlap by 4 nucleotides PGA1_c07740 and PGA1_c07750 overlap by 8 nucleotides PGA1_c07750 and PGA1_c07760 are separated by 12 nucleotides
PGA1_c07730: PGA1_c07730 - putative zinc-binding alcohol dehydrogenase, at 800,090 to 801,070
_c07730
PGA1_c07740: PGA1_c07740 - putative gluconate 5-dehydrogenase, at 801,067 to 801,828
_c07740
PGA1_c07750: PGA1_c07750 - histidinol dehydrogenase HisD, at 801,821 to 803,128
_c07750
PGA1_c07760: PGA1_c07760 - TRAP transporter, subunit DctM, at 803,141 to 804,469
_c07760
Position (kb) 801
802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2 at 800.924 kb on - strand, within PGA1_c07730 at 800.924 kb on - strand, within PGA1_c07730 at 800.984 kb on + strand at 801.029 kb on + strand at 801.085 kb on - strand at 801.139 kb on - strand at 801.198 kb on - strand, within PGA1_c07740 at 801.198 kb on - strand, within PGA1_c07740 at 801.241 kb on + strand, within PGA1_c07740 at 801.246 kb on + strand, within PGA1_c07740 at 801.266 kb on + strand, within PGA1_c07740 at 801.312 kb on - strand, within PGA1_c07740 at 801.386 kb on + strand, within PGA1_c07740 at 801.394 kb on - strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.442 kb on + strand, within PGA1_c07740 at 801.447 kb on + strand, within PGA1_c07740 at 801.502 kb on + strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.510 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.517 kb on - strand, within PGA1_c07740 at 801.519 kb on + strand, within PGA1_c07740 at 801.787 kb on + strand at 801.819 kb on + strand at 801.819 kb on + strand at 801.863 kb on - strand at 801.897 kb on + strand at 802.074 kb on + strand, within PGA1_c07750 at 802.074 kb on + strand, within PGA1_c07750 at 802.082 kb on - strand, within PGA1_c07750 at 802.142 kb on + strand, within PGA1_c07750 at 802.150 kb on - strand, within PGA1_c07750 at 802.199 kb on - strand, within PGA1_c07750 at 802.520 kb on + strand, within PGA1_c07750 at 802.535 kb on - strand, within PGA1_c07750 at 802.552 kb on + strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.560 kb on - strand, within PGA1_c07750 at 802.569 kb on - strand, within PGA1_c07750 at 802.584 kb on - strand, within PGA1_c07750 at 802.822 kb on - strand, within PGA1_c07750 at 802.875 kb on - strand, within PGA1_c07750 at 802.911 kb on + strand, within PGA1_c07750 at 802.930 kb on - strand, within PGA1_c07750 at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.061 kb on + strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.069 kb on - strand at 803.080 kb on + strand at 803.088 kb on - strand at 803.124 kb on - strand at 803.137 kb on - strand at 803.195 kb on + strand at 803.198 kb on - strand at 803.216 kb on + strand at 803.216 kb on + strand at 803.224 kb on - strand at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.290 kb on + strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.298 kb on - strand, within PGA1_c07760 at 803.334 kb on + strand, within PGA1_c07760 at 803.346 kb on + strand, within PGA1_c07760 at 803.431 kb on + strand, within PGA1_c07760 at 803.433 kb on + strand, within PGA1_c07760 at 803.439 kb on - strand, within PGA1_c07760 at 803.515 kb on + strand, within PGA1_c07760 at 803.543 kb on + strand, within PGA1_c07760 at 803.550 kb on + strand, within PGA1_c07760 at 803.551 kb on - strand, within PGA1_c07760 at 803.563 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.587 kb on + strand, within PGA1_c07760 at 803.595 kb on - strand, within PGA1_c07760 at 803.603 kb on - strand, within PGA1_c07760 at 803.656 kb on + strand, within PGA1_c07760 at 803.672 kb on - strand, within PGA1_c07760 at 803.683 kb on - strand, within PGA1_c07760 at 803.710 kb on + strand, within PGA1_c07760 at 803.713 kb on - strand, within PGA1_c07760 at 803.755 kb on + strand, within PGA1_c07760 at 803.788 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.815 kb on + strand, within PGA1_c07760 at 803.823 kb on - strand, within PGA1_c07760 at 803.841 kb on + strand, within PGA1_c07760 at 803.903 kb on + strand, within PGA1_c07760 at 803.906 kb on - strand, within PGA1_c07760 at 803.947 kb on - strand, within PGA1_c07760 at 804.023 kb on + strand, within PGA1_c07760 at 804.126 kb on + strand, within PGA1_c07760
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 800,924 - PGA1_c07730 0.85 -1.0 800,924 - PGA1_c07730 0.85 -0.4 800,984 + -0.0 801,029 + +0.6 801,085 - -1.4 801,139 - -1.0 801,198 - PGA1_c07740 0.17 +1.6 801,198 - PGA1_c07740 0.17 +1.6 801,241 + PGA1_c07740 0.23 +2.1 801,246 + PGA1_c07740 0.23 +0.4 801,266 + PGA1_c07740 0.26 -0.3 801,312 - PGA1_c07740 0.32 +0.8 801,386 + PGA1_c07740 0.42 +1.0 801,394 - PGA1_c07740 0.43 +1.6 801,442 + PGA1_c07740 0.49 +1.6 801,442 + PGA1_c07740 0.49 +1.6 801,447 + PGA1_c07740 0.50 +1.0 801,502 + PGA1_c07740 0.57 -0.0 801,510 - PGA1_c07740 0.58 -1.6 801,510 - PGA1_c07740 0.58 +0.6 801,517 - PGA1_c07740 0.59 +1.6 801,517 - PGA1_c07740 0.59 -1.4 801,519 + PGA1_c07740 0.59 -1.4 801,787 + -0.7 801,819 + +0.6 801,819 + +0.3 801,863 - +1.8 801,897 + -0.1 802,074 + PGA1_c07750 0.19 -1.0 802,074 + PGA1_c07750 0.19 +0.8 802,082 - PGA1_c07750 0.20 +0.6 802,142 + PGA1_c07750 0.25 -0.4 802,150 - PGA1_c07750 0.25 -0.0 802,199 - PGA1_c07750 0.29 -0.0 802,520 + PGA1_c07750 0.53 -0.5 802,535 - PGA1_c07750 0.55 -0.2 802,552 + PGA1_c07750 0.56 +0.2 802,560 - PGA1_c07750 0.56 +0.4 802,560 - PGA1_c07750 0.56 -0.0 802,569 - PGA1_c07750 0.57 +0.6 802,584 - PGA1_c07750 0.58 -1.7 802,822 - PGA1_c07750 0.77 +1.6 802,875 - PGA1_c07750 0.81 +2.6 802,911 + PGA1_c07750 0.83 -1.2 802,930 - PGA1_c07750 0.85 +0.4 803,061 + -0.9 803,061 + +0.5 803,061 + -0.0 803,061 + +1.9 803,061 + -0.6 803,061 + +0.6 803,069 - +0.6 803,069 - +1.2 803,069 - +0.8 803,069 - +1.6 803,080 + +1.1 803,088 - -0.0 803,124 - +1.3 803,137 - -1.6 803,195 + +1.2 803,198 - +0.6 803,216 + -0.9 803,216 + -0.1 803,224 - +2.6 803,290 + PGA1_c07760 0.11 -1.2 803,290 + PGA1_c07760 0.11 +0.5 803,290 + PGA1_c07760 0.11 +1.2 803,290 + PGA1_c07760 0.11 -0.5 803,298 - PGA1_c07760 0.12 -0.0 803,298 - PGA1_c07760 0.12 +2.6 803,298 - PGA1_c07760 0.12 -0.0 803,298 - PGA1_c07760 0.12 -0.7 803,298 - PGA1_c07760 0.12 -0.9 803,334 + PGA1_c07760 0.15 -1.4 803,346 + PGA1_c07760 0.15 -0.5 803,431 + PGA1_c07760 0.22 -0.3 803,433 + PGA1_c07760 0.22 -0.3 803,439 - PGA1_c07760 0.22 -1.0 803,515 + PGA1_c07760 0.28 -0.6 803,543 + PGA1_c07760 0.30 +0.7 803,550 + PGA1_c07760 0.31 -0.3 803,551 - PGA1_c07760 0.31 -0.6 803,563 + PGA1_c07760 0.32 -0.7 803,587 + PGA1_c07760 0.34 -0.5 803,587 + PGA1_c07760 0.34 +0.1 803,595 - PGA1_c07760 0.34 -0.2 803,603 - PGA1_c07760 0.35 -0.5 803,656 + PGA1_c07760 0.39 +1.3 803,672 - PGA1_c07760 0.40 +0.5 803,683 - PGA1_c07760 0.41 -0.4 803,710 + PGA1_c07760 0.43 +0.1 803,713 - PGA1_c07760 0.43 -1.4 803,755 + PGA1_c07760 0.46 -0.2 803,788 + PGA1_c07760 0.49 -0.4 803,815 + PGA1_c07760 0.51 +2.0 803,815 + PGA1_c07760 0.51 -0.2 803,815 + PGA1_c07760 0.51 -2.6 803,823 - PGA1_c07760 0.51 +0.3 803,841 + PGA1_c07760 0.53 -2.5 803,903 + PGA1_c07760 0.57 -0.7 803,906 - PGA1_c07760 0.58 +0.8 803,947 - PGA1_c07760 0.61 +1.6 804,023 + PGA1_c07760 0.66 +0.5 804,126 + PGA1_c07760 0.74 +1.6
Or see this region's nucleotide sequence