Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04230

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04210 and PGA1_c04220 are separated by 48 nucleotidesPGA1_c04220 and PGA1_c04230 are separated by 43 nucleotidesPGA1_c04230 and PGA1_c04240 are separated by 108 nucleotidesPGA1_c04240 and PGA1_c04250 overlap by 1 nucleotides PGA1_c04210: PGA1_c04210 - phosphate uptake ABC transporter permease protein PhoT, at 408,516 to 409,886 _c04210 PGA1_c04220: PGA1_c04220 - putative phosphonate metabolism, at 409,935 to 410,549 _c04220 PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 PGA1_c04250: PGA1_c04250 - protein PhnH, at 411,912 to 412,508 _c04250 Position (kb) 410 411 412Strain fitness (log2 ratio) -3 -2 -1 0 1at 409.594 kb on + strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.612 kb on + strand, within PGA1_c04210at 409.681 kb on - strand, within PGA1_c04210at 409.718 kb on + strand, within PGA1_c04210at 409.839 kb on - strandat 409.877 kb on - strandat 409.880 kb on + strandat 409.888 kb on - strandat 409.910 kb on + strandat 409.918 kb on - strandat 409.918 kb on - strandat 409.923 kb on - strandat 409.943 kb on + strandat 409.970 kb on + strandat 410.027 kb on - strand, within PGA1_c04220at 410.027 kb on - strand, within PGA1_c04220at 410.029 kb on + strand, within PGA1_c04220at 410.037 kb on - strand, within PGA1_c04220at 410.108 kb on + strand, within PGA1_c04220at 410.128 kb on - strand, within PGA1_c04220at 410.133 kb on - strand, within PGA1_c04220at 410.159 kb on + strand, within PGA1_c04220at 410.212 kb on + strand, within PGA1_c04220at 410.246 kb on + strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.308 kb on - strand, within PGA1_c04220at 410.317 kb on + strand, within PGA1_c04220at 410.323 kb on + strand, within PGA1_c04220at 410.329 kb on + strand, within PGA1_c04220at 410.385 kb on + strand, within PGA1_c04220at 410.419 kb on + strand, within PGA1_c04220at 410.483 kb on + strand, within PGA1_c04220at 410.491 kb on - strandat 410.496 kb on + strandat 410.518 kb on + strandat 410.549 kb on + strandat 410.557 kb on - strandat 410.559 kb on + strandat 410.572 kb on - strandat 410.631 kb on + strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.657 kb on + strandat 410.706 kb on + strand, within PGA1_c04230at 410.707 kb on - strand, within PGA1_c04230at 410.709 kb on - strand, within PGA1_c04230at 410.768 kb on + strand, within PGA1_c04230at 410.768 kb on - strand, within PGA1_c04230at 410.832 kb on - strand, within PGA1_c04230at 411.003 kb on + strand, within PGA1_c04230at 411.016 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.164 kb on - strand, within PGA1_c04230at 411.165 kb on - strand, within PGA1_c04230at 411.184 kb on - strand, within PGA1_c04230at 411.194 kb on + strand, within PGA1_c04230at 411.209 kb on - strand, within PGA1_c04230at 411.268 kb on - strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.424 kb on + strandat 411.424 kb on + strandat 411.432 kb on - strandat 411.433 kb on - strandat 411.452 kb on + strandat 411.486 kb on + strand, within PGA1_c04240at 411.500 kb on - strand, within PGA1_c04240at 411.501 kb on - strand, within PGA1_c04240at 411.568 kb on + strand, within PGA1_c04240at 411.594 kb on + strand, within PGA1_c04240at 411.608 kb on + strand, within PGA1_c04240at 411.640 kb on + strand, within PGA1_c04240at 411.648 kb on - strand, within PGA1_c04240at 411.740 kb on - strand, within PGA1_c04240at 411.814 kb on + strand, within PGA1_c04240at 411.816 kb on - strand, within PGA1_c04240at 411.838 kb on + strand, within PGA1_c04240at 411.906 kb on + strandat 411.931 kb on - strandat 412.031 kb on + strand, within PGA1_c04250at 412.031 kb on + strand, within PGA1_c04250at 412.047 kb on - strand, within PGA1_c04250at 412.086 kb on - strand, within PGA1_c04250at 412.151 kb on - strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on + strand, within PGA1_c04250at 412.179 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.187 kb on - strand, within PGA1_c04250at 412.189 kb on + strand, within PGA1_c04250at 412.197 kb on - strand, within PGA1_c04250at 412.222 kb on + strand, within PGA1_c04250at 412.223 kb on - strand, within PGA1_c04250at 412.230 kb on - strand, within PGA1_c04250at 412.238 kb on + strand, within PGA1_c04250at 412.258 kb on + strand, within PGA1_c04250at 412.309 kb on - strand, within PGA1_c04250

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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409,594 + PGA1_c04210 0.79 +0.3
409,596 - PGA1_c04210 0.79 -0.8
409,596 - PGA1_c04210 0.79 -0.0
409,596 - PGA1_c04210 0.79 -1.1
409,612 + PGA1_c04210 0.80 -0.7
409,681 - PGA1_c04210 0.85 +0.6
409,718 + PGA1_c04210 0.88 -2.2
409,839 - +0.3
409,877 - -2.2
409,880 + -0.9
409,888 - +0.2
409,910 + -0.8
409,918 - +0.2
409,918 - -2.5
409,923 - +0.4
409,943 + +0.5
409,970 + +0.0
410,027 - PGA1_c04220 0.15 +1.0
410,027 - PGA1_c04220 0.15 +0.6
410,029 + PGA1_c04220 0.15 -0.1
410,037 - PGA1_c04220 0.17 -1.5
410,108 + PGA1_c04220 0.28 -1.7
410,128 - PGA1_c04220 0.31 -1.1
410,133 - PGA1_c04220 0.32 +0.1
410,159 + PGA1_c04220 0.36 +1.2
410,212 + PGA1_c04220 0.45 +0.4
410,246 + PGA1_c04220 0.51 -1.2
410,254 - PGA1_c04220 0.52 -0.4
410,254 - PGA1_c04220 0.52 +0.1
410,305 + PGA1_c04220 0.60 -2.8
410,305 + PGA1_c04220 0.60 +0.4
410,305 + PGA1_c04220 0.60 -2.5
410,308 - PGA1_c04220 0.61 -0.2
410,317 + PGA1_c04220 0.62 +0.3
410,323 + PGA1_c04220 0.63 -1.5
410,329 + PGA1_c04220 0.64 -0.7
410,385 + PGA1_c04220 0.73 +0.8
410,419 + PGA1_c04220 0.79 +0.8
410,483 + PGA1_c04220 0.89 +0.2
410,491 - +0.8
410,496 + -0.7
410,518 + -0.9
410,549 + -1.4
410,557 - +0.6
410,559 + +0.2
410,572 - -0.4
410,631 + +0.1
410,639 - +0.0
410,639 - -0.7
410,639 - +0.8
410,657 + +0.6
410,706 + PGA1_c04230 0.15 +0.4
410,707 - PGA1_c04230 0.16 +0.1
410,709 - PGA1_c04230 0.16 +0.8
410,768 + PGA1_c04230 0.24 +1.0
410,768 - PGA1_c04230 0.24 -0.1
410,832 - PGA1_c04230 0.33 -1.5
411,003 + PGA1_c04230 0.56 +0.6
411,016 + PGA1_c04230 0.58 +0.7
411,129 + PGA1_c04230 0.73 -1.2
411,129 + PGA1_c04230 0.73 -0.7
411,164 - PGA1_c04230 0.78 +0.3
411,165 - PGA1_c04230 0.78 +0.2
411,184 - PGA1_c04230 0.80 -0.2
411,194 + PGA1_c04230 0.82 +0.3
411,209 - PGA1_c04230 0.84 +0.6
411,268 - -1.1
411,361 + +0.1
411,361 + +0.6
411,361 + -0.5
411,369 - +0.2
411,369 - -2.0
411,369 - -1.6
411,424 + +0.3
411,424 + +1.0
411,432 - +0.1
411,433 - -0.7
411,452 + +0.1
411,486 + PGA1_c04240 0.10 -0.3
411,500 - PGA1_c04240 0.13 -0.3
411,501 - PGA1_c04240 0.14 +0.3
411,568 + PGA1_c04240 0.28 +0.2
411,594 + PGA1_c04240 0.33 +0.4
411,608 + PGA1_c04240 0.36 -0.7
411,640 + PGA1_c04240 0.43 -0.4
411,648 - PGA1_c04240 0.44 -0.2
411,740 - PGA1_c04240 0.64 -0.6
411,814 + PGA1_c04240 0.79 -0.1
411,816 - PGA1_c04240 0.80 +1.6
411,838 + PGA1_c04240 0.84 -1.4
411,906 + +0.2
411,931 - +0.3
412,031 + PGA1_c04250 0.20 -0.8
412,031 + PGA1_c04250 0.20 +0.5
412,047 - PGA1_c04250 0.23 -0.0
412,086 - PGA1_c04250 0.29 -0.3
412,151 - PGA1_c04250 0.40 -0.5
412,179 + PGA1_c04250 0.45 +0.5
412,179 + PGA1_c04250 0.45 +0.1
412,179 - PGA1_c04250 0.45 +1.5
412,187 - PGA1_c04250 0.46 +0.8
412,187 - PGA1_c04250 0.46 +0.3
412,189 + PGA1_c04250 0.46 +0.3
412,197 - PGA1_c04250 0.48 -0.2
412,222 + PGA1_c04250 0.52 +0.5
412,223 - PGA1_c04250 0.52 -0.2
412,230 - PGA1_c04250 0.53 -0.4
412,238 + PGA1_c04250 0.55 -1.4
412,258 + PGA1_c04250 0.58 +0.4
412,309 - PGA1_c04250 0.66 +0.3

Or see this region's nucleotide sequence