Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00220

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00210 and PGA1_78p00220 are separated by 49 nucleotidesPGA1_78p00220 and PGA1_78p00230 are separated by 118 nucleotides PGA1_78p00210: PGA1_78p00210 - putative oxidoreductase, at 24,061 to 25,194 _78p00210 PGA1_78p00220: PGA1_78p00220 - transcriptional regulatory protein, LysR family, at 25,244 to 26,131 _78p00220 PGA1_78p00230: PGA1_78p00230 - putative NADH-ubiquinone oxidoreductase, at 26,250 to 27,800 _78p00230 Position (kb) 25 26 27Strain fitness (log2 ratio) -1 0 1 2 3at 24.532 kb on - strand, within PGA1_78p00210at 24.597 kb on + strand, within PGA1_78p00210at 24.853 kb on - strand, within PGA1_78p00210at 25.032 kb on + strand, within PGA1_78p00210at 25.362 kb on + strand, within PGA1_78p00220at 25.560 kb on - strand, within PGA1_78p00220at 26.110 kb on + strandat 26.118 kb on - strandat 26.199 kb on - strandat 26.335 kb on + strandat 26.362 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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24,532 - PGA1_78p00210 0.42 +1.2
24,597 + PGA1_78p00210 0.47 -0.5
24,853 - PGA1_78p00210 0.70 -0.9
25,032 + PGA1_78p00210 0.86 -1.1
25,362 + PGA1_78p00220 0.13 -0.5
25,560 - PGA1_78p00220 0.36 +3.5
26,110 + -0.1
26,118 - +0.7
26,199 - +1.9
26,335 + -0.9
26,362 + +1.4

Or see this region's nucleotide sequence