Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00190

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00170 and PGA1_78p00180 overlap by 8 nucleotidesPGA1_78p00180 and PGA1_78p00190 are separated by 6 nucleotidesPGA1_78p00190 and PGA1_78p00200 are separated by 20 nucleotidesPGA1_78p00200 and PGA1_78p00210 are separated by 9 nucleotides PGA1_78p00170: PGA1_78p00170 - putative sn-glycerol-3-phosphate transport system permease protein UgpA, at 20,341 to 21,273 _78p00170 PGA1_78p00180: PGA1_78p00180 - putative sn-glycerol-3-phosphate transport system permease protein UgpE, at 21,266 to 22,195 _78p00180 PGA1_78p00190: PGA1_78p00190 - sn-glycerol-3-phosphate import ATP-binding protein UgbC, at 22,202 to 23,287 _78p00190 PGA1_78p00200: PGA1_78p00200 - Sugar phosphate isomerases/epimerases, at 23,308 to 24,051 _78p00200 PGA1_78p00210: PGA1_78p00210 - putative oxidoreductase, at 24,061 to 25,194 _78p00210 Position (kb) 22 23 24Strain fitness (log2 ratio) -1 0 1 2 3 4at 21.439 kb on + strand, within PGA1_78p00180at 21.517 kb on + strand, within PGA1_78p00180at 21.554 kb on + strand, within PGA1_78p00180at 21.753 kb on + strand, within PGA1_78p00180at 22.116 kb on + strandat 22.192 kb on - strandat 22.427 kb on - strand, within PGA1_78p00190at 22.499 kb on + strand, within PGA1_78p00190at 22.861 kb on - strand, within PGA1_78p00190at 23.154 kb on - strand, within PGA1_78p00190at 23.781 kb on - strand, within PGA1_78p00200at 23.786 kb on - strand, within PGA1_78p00200at 24.221 kb on + strand, within PGA1_78p00210

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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21,439 + PGA1_78p00180 0.19 -0.8
21,517 + PGA1_78p00180 0.27 +0.4
21,554 + PGA1_78p00180 0.31 -0.5
21,753 + PGA1_78p00180 0.52 -0.3
22,116 + -0.9
22,192 - +0.6
22,427 - PGA1_78p00190 0.21 +4.5
22,499 + PGA1_78p00190 0.27 +2.3
22,861 - PGA1_78p00190 0.61 +1.4
23,154 - PGA1_78p00190 0.88 +0.4
23,781 - PGA1_78p00200 0.64 +0.5
23,786 - PGA1_78p00200 0.64 +1.1
24,221 + PGA1_78p00210 0.14 +0.7

Or see this region's nucleotide sequence