Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31350

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,275,173	+				-0.3
3,275,176	-				+0.8
3,275,187	-		PGA1_c31340	0.10	+0.3
3,275,203	-		PGA1_c31340	0.12	+0.8
3,275,203	-		PGA1_c31340	0.12	-0.5
3,275,245	+		PGA1_c31340	0.17	+0.8
3,275,253	-		PGA1_c31340	0.18	-0.4
3,275,253	-		PGA1_c31340	0.18	+0.3
3,275,253	-		PGA1_c31340	0.18	+0.5
3,275,302	-		PGA1_c31340	0.24	+0.6
3,275,311	-		PGA1_c31340	0.25	-0.6
3,275,360	-		PGA1_c31340	0.31	+0.7
3,275,370	+		PGA1_c31340	0.32	+0.4
3,275,372	+		PGA1_c31340	0.32	+1.0
3,275,372	+		PGA1_c31340	0.32	+0.6
3,275,372	+		PGA1_c31340	0.32	-2.0
3,275,372	+		PGA1_c31340	0.32	+0.9
3,275,372	+		PGA1_c31340	0.32	-0.1
3,275,380	-		PGA1_c31340	0.33	-1.9
3,275,380	-		PGA1_c31340	0.33	+0.7
3,275,380	-		PGA1_c31340	0.33	+0.6
3,275,380	-		PGA1_c31340	0.33	+0.6
3,275,380	-		PGA1_c31340	0.33	+0.0
3,275,381	+		PGA1_c31340	0.33	+0.7
3,275,409	+		PGA1_c31340	0.37	-0.3
3,275,417	-		PGA1_c31340	0.38	-1.2
3,275,444	+		PGA1_c31340	0.41	-0.4
3,275,494	-		PGA1_c31340	0.47	-0.6
3,275,494	-		PGA1_c31340	0.47	+0.3
3,275,535	+		PGA1_c31340	0.52	-1.0
3,275,540	+		PGA1_c31340	0.52	-0.2
3,275,540	+		PGA1_c31340	0.52	+0.3
3,275,543	-		PGA1_c31340	0.53	+1.1
3,275,599	-		PGA1_c31340	0.59	-1.7
3,275,624	-		PGA1_c31340	0.62	+0.3
3,275,652	+		PGA1_c31340	0.66	-2.0
3,275,684	+		PGA1_c31340	0.70	-1.1
3,275,768	+		PGA1_c31340	0.80	+0.4
3,275,776	+		PGA1_c31340	0.81	-2.3
3,275,785	-		PGA1_c31340	0.82	-0.6
3,275,786	-		PGA1_c31340	0.82	-0.0
3,275,793	+		PGA1_c31340	0.83	+0.5
3,275,801	-		PGA1_c31340	0.84	+0.5
3,275,808	-		PGA1_c31340	0.84	+0.2
3,275,835	+		PGA1_c31340	0.88	-2.1
3,275,841	+		PGA1_c31340	0.88	+0.8
3,275,841	+		PGA1_c31340	0.88	-0.3
3,275,849	-		PGA1_c31340	0.89	-0.0
3,275,851	+		PGA1_c31340	0.89	+0.9
3,275,851	+		PGA1_c31340	0.89	-0.1
3,275,851	+		PGA1_c31340	0.89	+0.4
3,275,851	+		PGA1_c31340	0.89	-0.9
3,275,851	+		PGA1_c31340	0.89	+0.6
3,275,859	-				-1.9
3,275,859	-				+1.4
3,275,859	-				-0.5
3,275,859	-				+1.9
3,275,859	-				+0.1
3,275,859	-				+0.4
3,275,859	-				-1.0
3,275,859	-				-0.3
3,275,859	-				-1.2
3,275,863	+				+0.4
3,275,871	-				-0.2
3,275,882	+				+0.3
3,275,882	+				-0.9
3,275,882	+				+0.1
3,275,931	+				+0.5
3,275,939	-				-0.6
3,275,946	+				+0.2
3,275,951	+				+0.1
3,275,951	+				-0.1
3,275,951	+				+0.4
3,275,951	+				-0.5
3,275,951	+				+0.4
3,275,951	+				-2.1
3,275,951	+				+0.2
3,275,951	+				-0.5
3,275,951	+				-0.2
3,275,951	+				-0.1
3,275,954	-				+0.1
3,275,959	-				-0.9
3,275,959	-				-0.3
3,275,959	-				-1.2
3,275,959	-				+0.5
3,275,959	-				+0.7
3,275,962	-				-0.1
3,275,977	+				+1.3
3,275,977	+				+0.1
3,275,977	+				+0.7
3,275,977	+				+1.5
3,275,985	-				+1.3
3,275,985	-				-0.4
3,276,039	+				-2.2
3,276,039	+				-0.8
3,276,048	+				+0.2
3,276,048	+				+0.7
3,276,048	+				-1.6
3,276,056	-				-2.2
3,276,058	+				-0.1
3,276,123	+				-0.8
3,276,127	-				-2.7
3,276,135	+				-0.2
3,276,135	+				+0.5
3,276,135	+				-0.6
3,276,135	+				+0.0
3,276,135	+				+0.0
3,276,135	+				+0.0
3,276,135	+				-0.5
3,276,135	+				-0.4
3,276,143	-				+0.3
3,276,143	-				-0.0
3,276,143	-				-0.5
3,276,143	-				+0.3
3,276,143	-				+0.9
3,276,143	-				-2.2
3,276,143	-				+0.8
3,276,143	-				-0.2
3,276,143	-				-0.8
3,276,143	-				+1.3
3,276,143	-				+0.8
3,276,143	-				+1.3
3,276,145	+				-0.0
3,276,145	+				+0.8
3,276,150	+				-1.1
3,276,150	+				-1.6
3,276,153	-				+0.6
3,276,158	-				+0.5
3,276,158	-				+0.2
3,276,186	-				+0.8
3,276,186	-				-0.1
3,276,221	+				-0.2
3,276,225	+				-0.2
3,276,228	-				+0.0
3,276,229	-				-0.7
3,276,252	-				-0.0
3,276,289	-		PGA1_c31350	0.10	-2.6
3,276,291	+		PGA1_c31350	0.11	+0.3
3,276,309	+		PGA1_c31350	0.12	+0.7
3,276,309	+		PGA1_c31350	0.12	+0.2
3,276,309	+		PGA1_c31350	0.12	-0.2
3,276,317	-		PGA1_c31350	0.12	+0.0
3,276,317	-		PGA1_c31350	0.12	-0.3
3,276,317	-		PGA1_c31350	0.12	+0.0
3,276,317	-		PGA1_c31350	0.12	+0.3
3,276,317	-		PGA1_c31350	0.12	+0.5
3,276,317	-		PGA1_c31350	0.12	-0.6
3,276,358	+		PGA1_c31350	0.15	+1.0
3,276,365	+		PGA1_c31350	0.15	+1.0
3,276,393	+		PGA1_c31350	0.17	+1.0
3,276,393	+		PGA1_c31350	0.17	-0.1
3,276,401	-		PGA1_c31350	0.17	-1.0
3,276,401	-		PGA1_c31350	0.17	+0.8
3,276,411	-		PGA1_c31350	0.18	-0.6
3,276,411	-		PGA1_c31350	0.18	-0.2
3,276,411	-		PGA1_c31350	0.18	-0.0
3,276,447	-		PGA1_c31350	0.20	+0.8
3,276,448	-		PGA1_c31350	0.20	-1.2
3,276,516	+		PGA1_c31350	0.25	+0.7
3,276,516	+		PGA1_c31350	0.25	-0.2
3,276,516	+		PGA1_c31350	0.25	+0.1
3,276,564	-		PGA1_c31350	0.28	-1.3
3,276,592	-		PGA1_c31350	0.30	-1.2
3,276,618	-		PGA1_c31350	0.31	+0.6
3,276,667	+		PGA1_c31350	0.34	-1.9
3,276,667	+		PGA1_c31350	0.34	-0.6
3,276,667	+		PGA1_c31350	0.34	+0.8
3,276,675	-		PGA1_c31350	0.35	+0.8
3,276,690	-		PGA1_c31350	0.36	+0.0
3,276,742	+		PGA1_c31350	0.39	-0.3
3,276,750	-		PGA1_c31350	0.40	-0.7
3,276,755	+		PGA1_c31350	0.40	+1.3
3,276,755	+		PGA1_c31350	0.40	+0.3
3,276,755	+		PGA1_c31350	0.40	-1.0
3,276,763	-		PGA1_c31350	0.40	+0.3
3,276,771	+		PGA1_c31350	0.41	-2.3
3,276,857	+		PGA1_c31350	0.46	+0.9
3,276,902	+		PGA1_c31350	0.49	-0.7
3,276,962	-		PGA1_c31350	0.53	+0.8
3,276,987	+		PGA1_c31350	0.55	+0.0
3,276,987	+		PGA1_c31350	0.55	+0.1
3,277,027	+		PGA1_c31350	0.57	-0.7
3,277,035	-		PGA1_c31350	0.58	-1.4
3,277,063	+		PGA1_c31350	0.59	-0.2
3,277,063	+		PGA1_c31350	0.59	+0.5
3,277,068	+		PGA1_c31350	0.60	+0.2
3,277,068	+		PGA1_c31350	0.60	-1.4
3,277,076	-		PGA1_c31350	0.60	+0.0
3,277,083	+		PGA1_c31350	0.61	-1.6
3,277,088	+		PGA1_c31350	0.61	-0.7
3,277,103	-		PGA1_c31350	0.62	-1.2
3,277,140	+		PGA1_c31350	0.64	-0.2
3,277,146	-		PGA1_c31350	0.65	+0.5
3,277,160	-		PGA1_c31350	0.66	-0.7
3,277,200	+		PGA1_c31350	0.68	-0.4
3,277,208	-		PGA1_c31350	0.69	-0.9
3,277,233	+		PGA1_c31350	0.70	-0.9
3,277,233	+		PGA1_c31350	0.70	+0.8
3,277,241	-		PGA1_c31350	0.71	+0.1
3,277,247	+		PGA1_c31350	0.71	+0.6
3,277,247	+		PGA1_c31350	0.71	-0.9
3,277,247	+		PGA1_c31350	0.71	-0.9
3,277,255	-		PGA1_c31350	0.72	-1.9
3,277,255	-		PGA1_c31350	0.72	-0.9
3,277,255	-		PGA1_c31350	0.72	-1.1
3,277,255	-		PGA1_c31350	0.72	-0.0
3,277,257	+		PGA1_c31350	0.72	+0.1
3,277,257	+		PGA1_c31350	0.72	+0.2
3,277,257	+		PGA1_c31350	0.72	-0.8
3,277,265	-		PGA1_c31350	0.72	+1.0
3,277,298	-		PGA1_c31350	0.74	-1.1
3,277,341	+		PGA1_c31350	0.77	-1.0
3,277,422	+		PGA1_c31350	0.82	-2.4
3,277,422	+		PGA1_c31350	0.82	+0.4
3,277,430	-		PGA1_c31350	0.83	-0.3
3,277,462	+		PGA1_c31350	0.85	-0.6
3,277,468	-		PGA1_c31350	0.85	+0.4
3,277,470	-		PGA1_c31350	0.85	-1.2
3,277,517	-		PGA1_c31350	0.88	-1.7
3,277,556	+				+0.2
3,277,637	-				+0.2
3,277,640	-				-0.4
3,277,651	-				-2.6
3,277,660	+				-1.6
3,277,709	-				+0.5
3,277,719	-				-1.2
3,277,745	-				+0.5
3,277,756	-				-0.3
3,277,868	+		PGA1_c31360	0.14	-0.3
3,277,887	+		PGA1_c31360	0.15	+0.8
3,277,895	-		PGA1_c31360	0.16	+1.0
3,277,895	-		PGA1_c31360	0.16	-0.0
3,277,913	-		PGA1_c31360	0.17	-0.9
3,277,940	-		PGA1_c31360	0.19	-0.3
3,277,969	-		PGA1_c31360	0.21	+0.7
3,277,971	+		PGA1_c31360	0.22	-1.5
3,278,039	+		PGA1_c31360	0.27	-0.1
3,278,052	-		PGA1_c31360	0.28	+1.0
3,278,065	-		PGA1_c31360	0.29	+0.2
3,278,171	-		PGA1_c31360	0.37	+0.2
3,278,198	+		PGA1_c31360	0.39	-0.2
3,278,209	-		PGA1_c31360	0.40	-2.5
3,278,235	+		PGA1_c31360	0.42	+0.6
3,278,279	+		PGA1_c31360	0.46	-0.7
3,278,293	+		PGA1_c31360	0.47	-0.2
3,278,341	+		PGA1_c31360	0.51	-0.3
3,278,361	-		PGA1_c31360	0.52	-0.1
3,278,370	+		PGA1_c31360	0.53	+0.1
3,278,385	+		PGA1_c31360	0.54	+0.4
3,278,385	+		PGA1_c31360	0.54	+0.3
3,278,385	+		PGA1_c31360	0.54	+0.8
3,278,393	-		PGA1_c31360	0.55	+0.1
3,278,393	-		PGA1_c31360	0.55	-0.2
3,278,393	-		PGA1_c31360	0.55	+0.6
3,278,434	+		PGA1_c31360	0.58	-1.7
3,278,462	-		PGA1_c31360	0.60	+1.6
3,278,462	-		PGA1_c31360	0.60	+0.7
3,278,481	-		PGA1_c31360	0.62	-0.7
3,278,552	-		PGA1_c31360	0.67	+0.6
3,278,564	-		PGA1_c31360	0.68	-0.1
3,278,613	-		PGA1_c31360	0.72	+0.3
3,278,620	-		PGA1_c31360	0.73	-0.3
3,278,649	-		PGA1_c31360	0.75	-0.1
3,278,649	-		PGA1_c31360	0.75	+0.1
3,278,649	-		PGA1_c31360	0.75	+0.7
3,278,649	-		PGA1_c31360	0.75	-0.1
3,278,652	-		PGA1_c31360	0.75	-0.1
3,278,652	-		PGA1_c31360	0.75	-0.3
3,278,652	-		PGA1_c31360	0.75	-0.7