Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c21290

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,201,543	-				-0.9
2,201,550	-				+2.7
2,201,560	-				+1.3
2,201,563	-				+0.5
2,201,570	+				+0.1
2,201,676	-		PGA1_c21280	0.15	-2.0
2,201,708	+		PGA1_c21280	0.19	-1.7
2,201,726	-		PGA1_c21280	0.21	+0.3
2,201,749	+		PGA1_c21280	0.23	-0.1
2,201,772	+		PGA1_c21280	0.26	-1.3
2,201,781	-		PGA1_c21280	0.27	+0.0
2,201,782	+		PGA1_c21280	0.27	+0.0
2,201,807	+		PGA1_c21280	0.30	-0.5
2,201,829	+		PGA1_c21280	0.32	-0.7
2,201,855	+		PGA1_c21280	0.35	+0.2
2,201,863	-		PGA1_c21280	0.36	+0.9
2,201,863	-		PGA1_c21280	0.36	-0.4
2,201,934	+		PGA1_c21280	0.43	-0.2
2,201,934	+		PGA1_c21280	0.43	-2.5
2,201,942	+		PGA1_c21280	0.44	-0.5
2,201,942	-		PGA1_c21280	0.44	-1.2
2,201,948	-		PGA1_c21280	0.45	+0.6
2,202,032	-		PGA1_c21280	0.54	+0.4
2,202,117	-		PGA1_c21280	0.63	-0.7
2,202,190	-		PGA1_c21280	0.71	-0.7
2,202,208	+		PGA1_c21280	0.73	+0.7
2,202,244	-		PGA1_c21280	0.77	-0.0
2,202,310	+		PGA1_c21280	0.84	+1.0
2,202,337	+		PGA1_c21280	0.87	+0.1
2,202,340	-		PGA1_c21280	0.88	-0.5
2,202,342	+		PGA1_c21280	0.88	+1.2
2,202,345	-		PGA1_c21280	0.88	-0.9
2,202,363	+				-0.4
2,202,417	+				-0.8
2,202,419	+				+0.3
2,202,425	-				-0.4
2,202,430	+				-1.4
2,202,430	+				-1.0
2,202,430	+				-0.4
2,202,436	+				+0.5
2,202,436	+				-0.5
2,202,438	-				+0.1
2,202,444	-				-0.2
2,202,444	-				-1.8
2,202,473	-				+0.4
2,202,505	+				+0.2
2,202,505	+				-0.3
2,202,505	+				+0.2
2,202,505	+				+0.6
2,202,505	+				+1.0
2,202,505	+				+0.0
2,202,505	+				-0.8
2,202,506	+				+0.0
2,202,506	+				-0.5
2,202,506	+				-0.4
2,202,506	+				+1.9
2,202,506	+				+0.1
2,202,506	+				+0.5
2,202,506	+				-2.5
2,202,506	+				+0.1
2,202,506	+				-1.7
2,202,506	+				-2.3
2,202,506	+				+0.6
2,202,506	+				+0.7
2,202,506	+				-0.4
2,202,506	+				-2.4
2,202,506	+				+0.2
2,202,506	+				-0.8
2,202,506	+				+2.3
2,202,506	+				-0.1
2,202,506	+				-2.4
2,202,506	+				+1.8
2,202,506	+				-2.0
2,202,506	+				+1.8
2,202,506	+				+1.1
2,202,506	+				+0.6
2,202,506	+				-0.3
2,202,506	+				+1.9
2,202,506	+				-0.3
2,202,506	+				+1.3
2,202,506	+				-1.5
2,202,506	+				+1.2
2,202,513	-				+0.7
2,202,513	-				-0.3
2,202,513	-				+0.7
2,202,514	-				-0.3
2,202,514	-				+1.5
2,202,514	-				-0.1
2,202,514	-				-1.3
2,202,514	-				+0.0
2,202,514	-				+3.3
2,202,514	-				-1.2
2,202,514	-				+0.0
2,202,514	-				-0.1
2,202,514	-				-0.9
2,202,514	-				+0.0
2,202,514	-				+1.4
2,202,514	-				+0.0
2,202,514	-				-0.3
2,202,514	-				-0.7
2,202,514	-				-0.3
2,202,514	-				-0.3
2,202,514	-				+0.7
2,202,514	-				+0.6
2,202,514	-				-0.6
2,202,514	-				-1.0
2,202,514	-				-2.9
2,202,514	-				-0.3
2,202,514	-				+0.1
2,202,514	-				+0.2
2,202,514	-				-0.7
2,202,514	-				-1.3
2,202,514	-				-2.3
2,202,514	-				-0.3
2,202,514	-				+0.9
2,202,514	-				+0.1
2,202,514	-				-0.2
2,202,514	-				+1.2
2,202,514	-				+0.6
2,202,514	-				-1.3
2,202,514	-				-0.7
2,202,514	-				-0.4
2,202,514	-				+0.6
2,202,514	-				+0.5
2,202,514	-				-1.3
2,202,514	-				-0.3
2,202,514	-				+0.2
2,202,514	-				-0.1
2,202,514	-				+0.1
2,202,514	-				-2.3
2,202,514	-				-0.5
2,202,514	-				-0.9
2,202,514	-				-0.3
2,202,514	-				-0.6
2,202,514	-				+0.9
2,202,514	-				-1.8
2,202,524	-				+1.0
2,202,524	-				-0.8
2,202,528	+				-0.3
2,202,528	-				+0.5
2,202,567	+				+0.6
2,202,633	+		PGA1_c21290	0.11	+1.7
2,202,641	-		PGA1_c21290	0.12	-0.1
2,202,656	+		PGA1_c21290	0.14	-1.3
2,202,673	-		PGA1_c21290	0.16	+0.3
2,202,680	-		PGA1_c21290	0.16	-0.7
2,202,689	+		PGA1_c21290	0.18	-0.5
2,202,697	-		PGA1_c21290	0.19	-0.7
2,202,801	-		PGA1_c21290	0.31	-1.1
2,202,814	-		PGA1_c21290	0.32	-0.3
2,202,863	-		PGA1_c21290	0.38	-0.3
2,202,974	+		PGA1_c21290	0.52	-0.2
2,202,974	+		PGA1_c21290	0.52	-1.7
2,202,982	-		PGA1_c21290	0.53	-0.3
2,203,050	+		PGA1_c21290	0.61	-0.1
2,203,065	+		PGA1_c21290	0.62	-1.9
2,203,073	-		PGA1_c21290	0.63	-0.1
2,203,082	-		PGA1_c21290	0.65	-0.8
2,203,097	+		PGA1_c21290	0.66	-1.1
2,203,100	-		PGA1_c21290	0.67	-0.5
2,203,144	-		PGA1_c21290	0.72	-0.8
2,203,184	+		PGA1_c21290	0.77	+0.5
2,203,203	-		PGA1_c21290	0.79	+1.7
2,203,222	+		PGA1_c21290	0.81	+1.0
2,203,262	-		PGA1_c21290	0.86	+0.1
2,203,288	-		PGA1_c21290	0.89	+0.6
2,203,288	-		PGA1_c21290	0.89	+1.8
2,203,293	-		PGA1_c21290	0.90	+0.1
2,203,340	+				+0.4
2,203,346	-				-1.8
2,203,346	-				+0.9
2,203,363	+				+0.9
2,203,375	-				-0.3
2,203,381	-				-0.6
2,203,381	-				-1.5
2,203,404	-				-0.4
2,203,407	+				-1.3
2,203,434	+				-0.8
2,203,441	-				-0.7
2,203,444	+				+1.7
2,203,477	+				-0.4
2,203,485	-				+0.9
2,203,487	+				-0.3
2,203,523	+				+1.0
2,203,531	-				-0.7
2,203,538	+				+0.8
2,203,555	+				-0.8
2,203,565	-		PGA1_c21300	0.10	-0.2
2,203,565	-		PGA1_c21300	0.10	+0.0
2,203,602	-		PGA1_c21300	0.12	-0.2
2,203,663	+		PGA1_c21300	0.16	+2.0
2,203,794	+		PGA1_c21300	0.24	-0.8
2,203,802	-		PGA1_c21300	0.25	-0.2
2,203,825	-		PGA1_c21300	0.26	-0.2
2,203,852	+		PGA1_c21300	0.28	+0.1
2,203,852	+		PGA1_c21300	0.28	-1.0
2,203,852	+				-1.0
2,203,852	+		PGA1_c21300	0.28	-1.1
2,203,860	-		PGA1_c21300	0.28	+0.9
2,203,870	-		PGA1_c21300	0.29	-0.2
2,203,900	+		PGA1_c21300	0.31	-0.6
2,203,905	-		PGA1_c21300	0.31	-0.1
2,203,908	-		PGA1_c21300	0.31	+0.3
2,203,911	+		PGA1_c21300	0.31	-0.0
2,203,919	-		PGA1_c21300	0.32	+0.7
2,204,036	+		PGA1_c21300	0.39	-0.5
2,204,042	-		PGA1_c21300	0.39	+0.1
2,204,042	-		PGA1_c21300	0.39	-0.2
2,204,054	+		PGA1_c21300	0.40	-0.7
2,204,094	+		PGA1_c21300	0.43	-1.2
2,204,137	+		PGA1_c21300	0.45	-0.2
2,204,138	+		PGA1_c21300	0.45	-0.5
2,204,144	+		PGA1_c21300	0.46	+0.8
2,204,146	-		PGA1_c21300	0.46	-0.7
2,204,146	-		PGA1_c21300	0.46	-0.4
2,204,146	-		PGA1_c21300	0.46	-0.8
2,204,152	-		PGA1_c21300	0.46	+0.5
2,204,167	-		PGA1_c21300	0.47	-0.1
2,204,167	-		PGA1_c21300	0.47	-0.4
2,204,181	-		PGA1_c21300	0.48	-0.8
2,204,195	+		PGA1_c21300	0.49	-1.2
2,204,203	-		PGA1_c21300	0.49	+0.0
2,204,203	-		PGA1_c21300	0.49	+0.5
2,204,203	-		PGA1_c21300	0.49	-0.5
2,204,203	-		PGA1_c21300	0.49	+2.0
2,204,217	+		PGA1_c21300	0.50	+0.8
2,204,272	-		PGA1_c21300	0.53	-0.2
2,204,272	-		PGA1_c21300	0.53	+0.2
2,204,375	-		PGA1_c21300	0.60	-1.0
2,204,375	-		PGA1_c21300	0.60	-0.3