Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c20110

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
2,084,071	+				+0.0
2,084,071	+				+1.7
2,084,071	+				-1.5
2,084,071	+				-0.3
2,084,071	+				-0.9
2,084,071	+				+2.6
2,084,071	+				-2.1
2,084,071	+				-1.7
2,084,071	+				-0.6
2,084,071	+				-0.3
2,084,071	+				-0.2
2,084,071	+				-0.7
2,084,104	-		PGA1_c20090	0.11	-2.5
2,084,127	-		PGA1_c20090	0.16	+0.4
2,084,149	+		PGA1_c20090	0.22	-2.3
2,084,153	-		PGA1_c20090	0.23	+0.7
2,084,157	-		PGA1_c20090	0.24	-0.4
2,084,194	-		PGA1_c20090	0.33	+1.3
2,084,203	-		PGA1_c20090	0.35	-1.7
2,084,209	-		PGA1_c20090	0.36	-0.9
2,084,239	-		PGA1_c20090	0.43	-0.7
2,084,260	+		PGA1_c20090	0.49	-0.6
2,084,265	+		PGA1_c20090	0.50	-0.5
2,084,265	+		PGA1_c20090	0.50	-0.8
2,084,265	+		PGA1_c20090	0.50	-0.7
2,084,265	+		PGA1_c20090	0.50	+0.0
2,084,268	-		PGA1_c20090	0.50	-0.2
2,084,268	-		PGA1_c20090	0.50	-0.2
2,084,268	-		PGA1_c20090	0.50	-1.9
2,084,273	-		PGA1_c20090	0.52	-2.3
2,084,283	-		PGA1_c20090	0.54	-1.7
2,084,297	+		PGA1_c20090	0.57	-0.7
2,084,298	+		PGA1_c20090	0.58	+0.3
2,084,299	+		PGA1_c20090	0.58	-1.5
2,084,299	+		PGA1_c20090	0.58	-0.7
2,084,305	-		PGA1_c20090	0.59	-1.1
2,084,305	-		PGA1_c20090	0.59	+1.3
2,084,305	-		PGA1_c20090	0.59	-0.7
2,084,313	+		PGA1_c20090	0.61	-2.4
2,084,313	+		PGA1_c20090	0.61	+0.5
2,084,321	-		PGA1_c20090	0.63	-1.8
2,084,337	+		PGA1_c20090	0.67	-0.2
2,084,414	+		PGA1_c20090	0.86	-1.0
2,084,422	-		PGA1_c20090	0.88	-1.5
2,084,443	+				+0.0
2,084,518	+		PGA1_c20100	0.13	+1.3
2,084,525	-		PGA1_c20100	0.15	-0.3
2,084,556	-		PGA1_c20100	0.23	-1.3
2,084,628	+		PGA1_c20100	0.43	+0.3
2,084,636	+		PGA1_c20100	0.45	-0.3
2,084,644	-		PGA1_c20100	0.47	-0.9
2,084,644	-		PGA1_c20100	0.47	+0.4
2,084,684	-		PGA1_c20100	0.58	+1.3
2,084,698	-		PGA1_c20100	0.62	+1.3
2,084,758	+		PGA1_c20100	0.78	-1.5
2,084,758	+		PGA1_c20100	0.78	-1.3
2,084,758	+		PGA1_c20100	0.78	+0.6
2,084,758	+		PGA1_c20100	0.78	-1.7
2,084,758	+		PGA1_c20100	0.78	-0.5
2,084,758	+		PGA1_c20100	0.78	-0.1
2,084,758	+		PGA1_c20100	0.78	-1.5
2,084,764	-		PGA1_c20100	0.79	+0.5
2,084,766	-		PGA1_c20100	0.80	+1.5
2,084,766	-		PGA1_c20100	0.80	+1.7
2,084,766	-		PGA1_c20100	0.80	-2.2
2,084,766	-		PGA1_c20100	0.80	-0.7
2,084,766	-		PGA1_c20100	0.80	+0.4
2,084,779	-		PGA1_c20100	0.83	+2.6
2,084,779	-		PGA1_c20100	0.83	-0.5
2,084,779	-		PGA1_c20100	0.83	+0.5
2,084,849	+				+0.8
2,084,849	+				+0.6
2,084,850	+				+1.3
2,084,857	-				-1.5
2,084,875	-				-0.7
2,084,890	+				+0.3
2,084,890	+				+0.8
2,084,896	+				-0.3
2,084,901	+				-0.3
2,084,901	+				+0.0
2,084,904	+				+0.5
2,084,909	-				+0.9
2,084,909	-				-1.5
2,084,909	-				-0.3
2,084,940	-				-1.1
2,084,966	+				+0.6
2,084,966	+				+0.3
2,084,966	+				-0.2
2,084,974	-				-0.6
2,084,974	-				-0.3
2,084,974	-				-1.1
2,084,974	-				-0.3
2,084,978	-				-0.6
2,084,978	-				+1.3
2,084,983	-				-1.5
2,085,006	+				-0.9
2,085,014	-				+0.4
2,085,032	-				-0.7
2,085,070	+				+0.3
2,085,100	-		PGA1_c20110	0.10	+0.0
2,085,101	+		PGA1_c20110	0.10	-0.9
2,085,101	+		PGA1_c20110	0.10	+0.4
2,085,101	+		PGA1_c20110	0.10	+0.8
2,085,101	+		PGA1_c20110	0.10	-1.7
2,085,101	+		PGA1_c20110	0.10	+1.3
2,085,101	+		PGA1_c20110	0.10	-1.1
2,085,104	-		PGA1_c20110	0.10	-0.1
2,085,104	-		PGA1_c20110	0.10	-1.0
2,085,109	-		PGA1_c20110	0.11	-2.6
2,085,109	-		PGA1_c20110	0.11	+0.3
2,085,109	-		PGA1_c20110	0.11	+0.3
2,085,109	-		PGA1_c20110	0.11	-0.2
2,085,109	-		PGA1_c20110	0.11	-0.3
2,085,109	-		PGA1_c20110	0.11	-0.3
2,085,109	-		PGA1_c20110	0.11	-0.2
2,085,109	-		PGA1_c20110	0.11	-1.0
2,085,109	-		PGA1_c20110	0.11	+0.5
2,085,109	-		PGA1_c20110	0.11	+0.1
2,085,109	-		PGA1_c20110	0.11	-0.1
2,085,109	-		PGA1_c20110	0.11	-1.1
2,085,109	-		PGA1_c20110	0.11	-1.3
2,085,109	-		PGA1_c20110	0.11	+0.7
2,085,111	+		PGA1_c20110	0.11	-0.3
2,085,111	+		PGA1_c20110	0.11	-0.3
2,085,111	-		PGA1_c20110	0.11	-2.3
2,085,117	-		PGA1_c20110	0.11	+0.3
2,085,119	-		PGA1_c20110	0.11	-0.5
2,085,135	-		PGA1_c20110	0.12	+0.1
2,085,137	+		PGA1_c20110	0.12	-1.2
2,085,142	+		PGA1_c20110	0.13	-0.7
2,085,145	-		PGA1_c20110	0.13	+1.3
2,085,145	-		PGA1_c20110	0.13	-2.5
2,085,145	-		PGA1_c20110	0.13	-0.1
2,085,145	-		PGA1_c20110	0.13	+0.3
2,085,147	+		PGA1_c20110	0.13	+0.3
2,085,147	+		PGA1_c20110	0.13	+0.4
2,085,147	+		PGA1_c20110	0.13	+1.1
2,085,147	+		PGA1_c20110	0.13	-1.3
2,085,155	-		PGA1_c20110	0.13	+0.7
2,085,155	-		PGA1_c20110	0.13	-1.7
2,085,160	-		PGA1_c20110	0.14	+1.0
2,085,160	-		PGA1_c20110	0.14	+0.6
2,085,170	-		PGA1_c20110	0.14	+1.3
2,085,182	+		PGA1_c20110	0.15	-0.5
2,085,185	-		PGA1_c20110	0.15	-1.1
2,085,190	-		PGA1_c20110	0.15	-2.3
2,085,195	+		PGA1_c20110	0.16	+0.5
2,085,220	-		PGA1_c20110	0.17	+0.0
2,085,240	-		PGA1_c20110	0.19	-0.1
2,085,252	+		PGA1_c20110	0.19	+1.8
2,085,252	+		PGA1_c20110	0.19	-0.5
2,085,252	+		PGA1_c20110	0.19	-0.9
2,085,252	+		PGA1_c20110	0.19	-2.5
2,085,260	-		PGA1_c20110	0.20	-0.5
2,085,260	-		PGA1_c20110	0.20	+0.7
2,085,278	+		PGA1_c20110	0.21	-2.1
2,085,278	+		PGA1_c20110	0.21	-2.2
2,085,278	+		PGA1_c20110	0.21	+0.0
2,085,286	-		PGA1_c20110	0.21	+0.3
2,085,286	-		PGA1_c20110	0.21	-2.5
2,085,345	+		PGA1_c20110	0.25	-0.5
2,085,381	+		PGA1_c20110	0.27	-0.7
2,085,397	-		PGA1_c20110	0.28	-0.7
2,085,397	-		PGA1_c20110	0.28	+1.3
2,085,397	-		PGA1_c20110	0.28	+1.5
2,085,397	-		PGA1_c20110	0.28	-0.2
2,085,397	-		PGA1_c20110	0.28	+1.3
2,085,399	+		PGA1_c20110	0.28	-0.1
2,085,399	+		PGA1_c20110	0.28	+0.5
2,085,399	+		PGA1_c20110	0.28	-1.2
2,085,407	-		PGA1_c20110	0.29	+2.8
2,085,412	-		PGA1_c20110	0.29	-0.6
2,085,417	+		PGA1_c20110	0.29	+1.6
2,085,417	+		PGA1_c20110	0.29	-1.3
2,085,417	+		PGA1_c20110	0.29	+0.3
2,085,425	-		PGA1_c20110	0.30	-0.9
2,085,425	-		PGA1_c20110	0.30	+1.3
2,085,425	-		PGA1_c20110	0.30	-1.5
2,085,469	+		PGA1_c20110	0.32	-0.5
2,085,478	+		PGA1_c20110	0.33	+1.5
2,085,481	-		PGA1_c20110	0.33	+0.5
2,085,483	+		PGA1_c20110	0.33	+1.3
2,085,483	+		PGA1_c20110	0.33	-0.7
2,085,486	-		PGA1_c20110	0.33	-0.3
2,085,491	-		PGA1_c20110	0.34	+0.1
2,085,491	-		PGA1_c20110	0.34	+2.0
2,085,491	-		PGA1_c20110	0.34	-0.3
2,085,491	-		PGA1_c20110	0.34	+0.0
2,085,491	-		PGA1_c20110	0.34	-1.1
2,085,491	-		PGA1_c20110	0.34	+0.5
2,085,493	+		PGA1_c20110	0.34	+0.3
2,085,501	-		PGA1_c20110	0.34	-0.3
2,085,502	+		PGA1_c20110	0.34	+0.3
2,085,502	-		PGA1_c20110	0.34	+0.5
2,085,521	-		PGA1_c20110	0.36	-1.2
2,085,554	+		PGA1_c20110	0.38	+0.8
2,085,871	+		PGA1_c20110	0.57	-0.5
2,085,897	-		PGA1_c20110	0.58	+1.3
2,085,918	+		PGA1_c20110	0.60	-0.7
2,085,918	+		PGA1_c20110	0.60	-2.7
2,085,918	+		PGA1_c20110	0.60	-0.9
2,085,918	+		PGA1_c20110	0.60	+1.3
2,085,918	+		PGA1_c20110	0.60	-1.1
2,085,925	+		PGA1_c20110	0.60	-0.1
2,085,925	+		PGA1_c20110	0.60	-0.1
2,085,925	+		PGA1_c20110	0.60	-0.9
2,085,925	+		PGA1_c20110	0.60	+0.8
2,085,925	+		PGA1_c20110	0.60	-0.7
2,085,925	+		PGA1_c20110	0.60	-0.5
2,085,925	+		PGA1_c20110	0.60	-1.4
2,085,926	-		PGA1_c20110	0.60	-2.1
2,085,926	-				+0.3
2,085,926	-		PGA1_c20110	0.60	-2.2
2,085,926	-		PGA1_c20110	0.60	+0.4
2,085,933	-		PGA1_c20110	0.61	-1.3
2,085,933	-		PGA1_c20110	0.61	-0.6
2,085,933	-		PGA1_c20110	0.61	+0.4
2,085,933	-		PGA1_c20110	0.61	-0.2
2,085,933	-		PGA1_c20110	0.61	-1.1
2,085,933	-		PGA1_c20110	0.61	+0.3
2,085,933	-		PGA1_c20110	0.61	-0.3
2,085,933	-		PGA1_c20110	0.61	+0.3
2,085,933	-		PGA1_c20110	0.61	-0.7
2,085,933	-		PGA1_c20110	0.61	+0.3
2,085,933	-		PGA1_c20110	0.61	+1.3
2,085,933	-		PGA1_c20110	0.61	-1.5
2,085,933	-		PGA1_c20110	0.61	-1.1
2,085,959	-		PGA1_c20110	0.62	+2.0
2,086,007	-		PGA1_c20110	0.65	+0.6
2,086,007	-		PGA1_c20110	0.65	-0.5
2,086,025	+		PGA1_c20110	0.66	+0.1
2,086,033	-		PGA1_c20110	0.67	+0.3
2,086,033	-		PGA1_c20110	0.67	-0.7
2,086,033	-		PGA1_c20110	0.67	-1.4
2,086,033	-		PGA1_c20110	0.67	-0.0
2,086,062	+		PGA1_c20110	0.68	-0.1
2,086,070	-		PGA1_c20110	0.69	-1.9
2,086,109	+		PGA1_c20110	0.71	-0.2
2,086,109	+		PGA1_c20110	0.71	-0.4
2,086,109	+		PGA1_c20110	0.71	-1.3
2,086,117	-		PGA1_c20110	0.72	-0.2
2,086,127	+		PGA1_c20110	0.72	-2.1
2,086,145	-		PGA1_c20110	0.73	+0.8
2,086,161	-		PGA1_c20110	0.74	-1.7
2,086,162	+		PGA1_c20110	0.74	-0.6
2,086,213	-		PGA1_c20110	0.78	+2.3
2,086,213	-		PGA1_c20110	0.78	-0.3
2,086,249	+		PGA1_c20110	0.80	-0.2
2,086,271	+		PGA1_c20110	0.81	+1.3
2,086,271	+		PGA1_c20110	0.81	+0.2
2,086,276	+		PGA1_c20110	0.81	-0.7
2,086,276	+		PGA1_c20110	0.81	+0.6
2,086,276	+		PGA1_c20110	0.81	-0.9
2,086,282	+		PGA1_c20110	0.82	-0.7
2,086,284	-		PGA1_c20110	0.82	+0.6
2,086,284	-		PGA1_c20110	0.82	-1.3
2,086,284	-		PGA1_c20110	0.82	-0.2
2,086,342	+		PGA1_c20110	0.85	-1.5
2,086,357	-		PGA1_c20110	0.86	-0.2
2,086,360	-		PGA1_c20110	0.87	-1.3
2,086,413	+		PGA1_c20110	0.90	-0.7
2,086,430	+				-0.6
2,086,430	+				+0.4
2,086,438	-				-1.0
2,086,438	-				-0.1
2,086,443	+				-1.5
2,086,445	+				-1.3
2,086,445	+				-0.1
2,086,445	+				-1.3
2,086,445	+				+0.3
2,086,445	+				-1.1
2,086,445	+				-0.5
2,086,445	+				-2.3
2,086,445	+				+1.3
2,086,445	+				-0.2
2,086,453	-				-1.3
2,086,453	-				-1.2
2,086,453	-				-1.2
2,086,481	+				-0.7
2,086,488	+				-0.3
2,086,498	+				-2.3
2,086,543	-				+0.3
2,086,545	+				-1.1
2,086,548	-				+0.9
2,086,553	-				-0.9
2,086,553	-				+1.7
2,086,553	-				+0.3
2,086,553	-				-1.7
2,086,557	+				-1.2
2,086,565	-				+0.7
2,086,606	-				+1.3
2,086,608	+				+0.2
2,086,633	+				+0.5
2,086,634	+				+0.1
2,086,683	+				-0.1
2,086,691	-				-0.1
2,086,691	-				+2.3
2,086,691	-				-0.4
2,086,691	-				+0.0
2,086,713	-				-0.0
2,086,713	-				+0.5
2,086,739	+				+0.3
2,086,751	-				-1.1
2,086,772	+				-0.0
2,086,780	-				-1.5
2,086,780	-				+2.0
2,086,790	-				-1.1
2,086,818	+				-0.1
2,086,818	+				-1.4
2,086,826	-				+1.7
2,086,826	-				-1.5
2,086,828	-				+1.5
2,086,953	-				+0.3
2,086,998	-				-0.5
2,087,005	+				+0.3
2,087,009	+				-1.1
2,087,013	-				+0.6
2,087,047	+				-0.5
2,087,055	-				-0.1
2,087,074	-		PGA1_c20120	0.10	-0.5
2,087,105	+		PGA1_c20120	0.17	-0.3
2,087,105	+		PGA1_c20120	0.17	+0.3
2,087,105	+		PGA1_c20120	0.17	-0.8
2,087,105	+		PGA1_c20120	0.17	-0.3
2,087,113	-		PGA1_c20120	0.19	+0.4
2,087,113	-		PGA1_c20120	0.19	+0.5
2,087,114	-		PGA1_c20120	0.19	+0.3
2,087,133	+		PGA1_c20120	0.23	+0.7
2,087,163	+		PGA1_c20120	0.29	-1.5
2,087,180	-		PGA1_c20120	0.33	-0.6
2,087,236	-		PGA1_c20120	0.45	+1.3
2,087,317	+		PGA1_c20120	0.62	+0.6
2,087,383	-		PGA1_c20120	0.76	-1.5
2,087,383	-		PGA1_c20120	0.76	+0.8
2,087,423	-		PGA1_c20120	0.85	-0.3
2,087,547	+				-3.0