Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11460

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c11440 and PGA1_c11450 overlap by 22 nucleotidesPGA1_c11450 and PGA1_c11460 are separated by 498 nucleotidesPGA1_c11460 and PGA1_c11470 are separated by 37 nucleotidesPGA1_c11470 and PGA1_c11480 overlap by 4 nucleotides PGA1_c11440: PGA1_c11440 - hypothetical protein, at 1,185,112 to 1,185,360 _c11440 PGA1_c11450: PGA1_c11450 - hypothetical protein, at 1,185,339 to 1,185,614 _c11450 PGA1_c11460: PGA1_c11460 - hypothetical protein, at 1,186,113 to 1,186,331 _c11460 PGA1_c11470: PGA1_c11470 - acetyltransferase domain-containing protein, at 1,186,369 to 1,186,818 _c11470 PGA1_c11480: PGA1_c11480 - Uncharacterized conserved protein, at 1,186,815 to 1,187,342 _c11480 Position (kb) 1186 1187Strain fitness (log2 ratio) -2 -1 0 1at 1185.122 kb on + strandat 1185.130 kb on - strandat 1185.137 kb on + strand, within PGA1_c11440at 1185.163 kb on - strand, within PGA1_c11440at 1185.233 kb on + strand, within PGA1_c11440at 1185.319 kb on + strand, within PGA1_c11440at 1185.327 kb on - strand, within PGA1_c11440at 1185.337 kb on + strandat 1185.346 kb on - strandat 1185.413 kb on - strand, within PGA1_c11450at 1185.645 kb on + strandat 1185.650 kb on - strandat 1185.664 kb on + strandat 1185.668 kb on - strandat 1185.685 kb on + strandat 1185.704 kb on + strandat 1185.735 kb on - strandat 1185.735 kb on - strandat 1185.818 kb on - strandat 1185.917 kb on + strandat 1185.920 kb on + strandat 1185.930 kb on + strandat 1185.938 kb on - strandat 1185.964 kb on + strandat 1186.008 kb on - strandat 1186.031 kb on + strandat 1186.031 kb on + strandat 1186.031 kb on + strandat 1186.089 kb on + strandat 1186.111 kb on + strandat 1186.111 kb on + strandat 1186.152 kb on - strand, within PGA1_c11460at 1186.169 kb on - strand, within PGA1_c11460at 1186.169 kb on - strand, within PGA1_c11460at 1186.173 kb on + strand, within PGA1_c11460at 1186.180 kb on + strand, within PGA1_c11460at 1186.197 kb on - strand, within PGA1_c11460at 1186.305 kb on - strand, within PGA1_c11460at 1186.450 kb on - strand, within PGA1_c11470at 1186.507 kb on - strand, within PGA1_c11470at 1186.512 kb on - strand, within PGA1_c11470at 1186.617 kb on - strand, within PGA1_c11470at 1186.719 kb on - strand, within PGA1_c11470at 1186.772 kb on + strand, within PGA1_c11470at 1186.782 kb on + strandat 1186.785 kb on - strandat 1186.785 kb on - strandat 1186.785 kb on - strandat 1186.785 kb on - strandat 1186.897 kb on - strand, within PGA1_c11480at 1186.897 kb on - strand, within PGA1_c11480at 1186.899 kb on - strand, within PGA1_c11480at 1186.961 kb on + strand, within PGA1_c11480at 1186.999 kb on - strand, within PGA1_c11480at 1187.032 kb on + strand, within PGA1_c11480at 1187.077 kb on + strand, within PGA1_c11480at 1187.197 kb on - strand, within PGA1_c11480at 1187.278 kb on - strand, within PGA1_c11480at 1187.301 kb on - strandat 1187.303 kb on + strandat 1187.311 kb on - strandat 1187.311 kb on - strandat 1187.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,185,122 + -0.1
1,185,130 - -0.4
1,185,137 + PGA1_c11440 0.10 -0.1
1,185,163 - PGA1_c11440 0.20 +0.1
1,185,233 + PGA1_c11440 0.49 +0.1
1,185,319 + PGA1_c11440 0.83 +0.0
1,185,327 - PGA1_c11440 0.86 +0.1
1,185,337 + +0.4
1,185,346 - -0.5
1,185,413 - PGA1_c11450 0.27 +0.1
1,185,645 + -0.2
1,185,650 - +1.4
1,185,664 + -0.3
1,185,668 - +0.2
1,185,685 + -0.4
1,185,704 + -0.5
1,185,735 - +0.3
1,185,735 - +0.6
1,185,818 - +0.1
1,185,917 + -0.1
1,185,920 + +0.9
1,185,930 + -0.4
1,185,938 - -0.1
1,185,964 + +0.6
1,186,008 - -0.3
1,186,031 + +0.2
1,186,031 + -0.9
1,186,031 + +0.5
1,186,089 + -0.2
1,186,111 + -0.2
1,186,111 + -0.3
1,186,152 - PGA1_c11460 0.18 -1.5
1,186,169 - PGA1_c11460 0.26 -0.6
1,186,169 - PGA1_c11460 0.26 -0.2
1,186,173 + PGA1_c11460 0.27 -1.0
1,186,180 + PGA1_c11460 0.31 -1.2
1,186,197 - PGA1_c11460 0.38 -0.8
1,186,305 - PGA1_c11460 0.88 +0.1
1,186,450 - PGA1_c11470 0.18 +1.3
1,186,507 - PGA1_c11470 0.31 +1.6
1,186,512 - PGA1_c11470 0.32 -1.9
1,186,617 - PGA1_c11470 0.55 -0.5
1,186,719 - PGA1_c11470 0.78 -0.2
1,186,772 + PGA1_c11470 0.90 +0.6
1,186,782 + +1.6
1,186,785 - +0.7
1,186,785 - +1.2
1,186,785 - -1.1
1,186,785 - +0.8
1,186,897 - PGA1_c11480 0.16 -0.1
1,186,897 - PGA1_c11480 0.16 +0.3
1,186,899 - PGA1_c11480 0.16 +0.3
1,186,961 + PGA1_c11480 0.28 -0.3
1,186,999 - PGA1_c11480 0.35 -0.1
1,187,032 + PGA1_c11480 0.41 +1.1
1,187,077 + PGA1_c11480 0.50 +1.0
1,187,197 - PGA1_c11480 0.72 -0.7
1,187,278 - PGA1_c11480 0.88 -0.2
1,187,301 - +0.6
1,187,303 + +0.7
1,187,311 - +0.8
1,187,311 - +0.6
1,187,313 + -0.1

Or see this region's nucleotide sequence