Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c10280

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
1,064,293	+		PGA1_c10270	0.26	-0.3
1,064,293	+		PGA1_c10270	0.26	+0.3
1,064,293	+		PGA1_c10270	0.26	-0.7
1,064,336	+		PGA1_c10270	0.30	+0.3
1,064,339	+		PGA1_c10270	0.30	+0.5
1,064,341	+		PGA1_c10270	0.30	-2.5
1,064,373	+		PGA1_c10270	0.33	-0.1
1,064,411	-		PGA1_c10270	0.37	-0.7
1,064,436	+		PGA1_c10270	0.39	+0.0
1,064,436	+		PGA1_c10270	0.39	+0.1
1,064,436	+		PGA1_c10270	0.39	+1.9
1,064,461	+		PGA1_c10270	0.41	-1.4
1,064,471	+		PGA1_c10270	0.42	+0.8
1,064,479	-		PGA1_c10270	0.43	+0.5
1,064,485	-		PGA1_c10270	0.44	-0.8
1,064,574	+		PGA1_c10270	0.52	-1.4
1,064,574	+		PGA1_c10270	0.52	-2.6
1,064,656	+		PGA1_c10270	0.60	-0.6
1,064,686	+		PGA1_c10270	0.63	-0.6
1,064,694	-		PGA1_c10270	0.63	+0.8
1,064,718	-		PGA1_c10270	0.66	-0.9
1,064,723	-		PGA1_c10270	0.66	-0.5
1,064,754	-		PGA1_c10270	0.69	+0.3
1,064,754	-		PGA1_c10270	0.69	+0.3
1,064,866	-		PGA1_c10270	0.79	+2.6
1,064,880	+		PGA1_c10270	0.81	+0.6
1,064,922	+		PGA1_c10270	0.85	-0.6
1,064,925	-		PGA1_c10270	0.85	-0.9
1,064,938	-		PGA1_c10270	0.86	+0.5
1,064,953	-		PGA1_c10270	0.88	-1.1
1,065,013	+				-0.3
1,065,124	+				-0.6
1,065,124	+				+0.1
1,065,124	+				-0.6
1,065,132	-				-1.0
1,065,132	-				+0.8
1,065,132	-				-0.8
1,065,132	-				+0.6
1,065,132	-				-1.2
1,065,137	-				-0.2
1,065,142	-				-0.9
1,065,142	-				+0.8
1,065,142	-				+0.7
1,065,142	-				+0.8
1,065,142	-				-0.2
1,065,143	-				-1.7
1,065,160	-				-0.1
1,065,200	+				+0.8
1,065,308	+				-0.9
1,065,313	+				-0.7
1,065,316	-				-2.7
1,065,316	-				-0.5
1,065,316	-				-1.3
1,065,344	+				-1.3
1,065,354	+				+1.4
1,065,354	+				+0.7
1,065,461	-		PGA1_c10280	0.15	+0.3
1,065,466	-		PGA1_c10280	0.15	-0.3
1,065,475	-		PGA1_c10280	0.16	-2.6
1,065,485	+		PGA1_c10280	0.17	-0.2
1,065,558	+		PGA1_c10280	0.23	-1.6
1,065,558	+		PGA1_c10280	0.23	+0.1
1,065,558	+		PGA1_c10280	0.23	-0.4
1,065,558	+		PGA1_c10280	0.23	-0.1
1,065,558	+		PGA1_c10280	0.23	-0.3
1,065,560	+		PGA1_c10280	0.23	+0.4
1,065,566	-		PGA1_c10280	0.24	-0.5
1,065,568	-		PGA1_c10280	0.24	-1.0
1,065,572	+		PGA1_c10280	0.24	+0.2
1,065,589	+		PGA1_c10280	0.26	+0.2
1,065,611	-		PGA1_c10280	0.28	+1.3
1,065,619	-		PGA1_c10280	0.28	+1.0
1,065,645	+		PGA1_c10280	0.31	-1.0
1,065,653	-		PGA1_c10280	0.31	-2.2
1,065,653	-		PGA1_c10280	0.31	-3.8
1,065,703	-		PGA1_c10280	0.36	-1.3
1,065,739	+		PGA1_c10280	0.39	+0.2
1,065,747	-		PGA1_c10280	0.39	-1.7
1,065,797	+		PGA1_c10280	0.44	-0.5
1,065,812	-		PGA1_c10280	0.45	-1.5
1,065,818	-		PGA1_c10280	0.46	-1.7
1,065,834	-		PGA1_c10280	0.47	-0.3
1,065,840	+		PGA1_c10280	0.47	-0.6
1,065,840	+		PGA1_c10280	0.47	-1.3
1,065,858	-		PGA1_c10280	0.49	+0.9
1,065,921	+		PGA1_c10280	0.54	-1.8
1,065,980	-		PGA1_c10280	0.60	+0.3
1,065,987	+		PGA1_c10280	0.60	+0.1
1,065,987	+		PGA1_c10280	0.60	-1.0
1,065,987	+		PGA1_c10280	0.60	-0.7
1,065,987	+		PGA1_c10280	0.60	-1.1
1,065,987	+		PGA1_c10280	0.60	-3.6
1,065,987	+		PGA1_c10280	0.60	-0.3
1,065,987	+		PGA1_c10280	0.60	-0.6
1,065,987	+		PGA1_c10280	0.60	-0.9
1,065,987	+		PGA1_c10280	0.60	-0.2
1,065,987	+		PGA1_c10280	0.60	-0.9
1,065,987	+		PGA1_c10280	0.60	-1.2
1,065,987	+		PGA1_c10280	0.60	-0.9
1,065,987	+		PGA1_c10280	0.60	+1.1
1,065,987	+		PGA1_c10280	0.60	-1.6
1,065,995	-		PGA1_c10280	0.61	-1.3
1,065,995	-		PGA1_c10280	0.61	-0.4
1,065,995	-		PGA1_c10280	0.61	-0.2
1,065,995	-		PGA1_c10280	0.61	-1.2
1,065,995	-		PGA1_c10280	0.61	-0.3
1,065,995	-		PGA1_c10280	0.61	-0.9
1,065,995	-		PGA1_c10280	0.61	-0.2
1,065,995	-		PGA1_c10280	0.61	-0.5
1,065,995	-		PGA1_c10280	0.61	-1.9
1,065,995	-		PGA1_c10280	0.61	-1.6
1,065,995	-		PGA1_c10280	0.61	-1.2
1,065,995	-		PGA1_c10280	0.61	+0.2
1,065,995	-		PGA1_c10280	0.61	+0.3
1,065,995	-		PGA1_c10280	0.61	-1.0
1,066,006	+		PGA1_c10280	0.62	-0.4
1,066,047	+		PGA1_c10280	0.65	+0.7
1,066,055	-		PGA1_c10280	0.66	-0.6
1,066,081	-		PGA1_c10280	0.68	-2.2
1,066,083	+		PGA1_c10280	0.68	-0.7
1,066,094	+		PGA1_c10280	0.69	+0.0
1,066,094	+		PGA1_c10280	0.69	-0.2
1,066,094	+		PGA1_c10280	0.69	+1.0
1,066,102	-		PGA1_c10280	0.70	-0.3
1,066,111	+		PGA1_c10280	0.71	-1.2
1,066,134	-		PGA1_c10280	0.73	-1.5
1,066,149	+		PGA1_c10280	0.74	-1.6
1,066,157	-		PGA1_c10280	0.75	+0.7
1,066,162	+		PGA1_c10280	0.75	-1.3
1,066,164	+		PGA1_c10280	0.75	-1.3
1,066,174	+		PGA1_c10280	0.76	+1.0
1,066,174	+		PGA1_c10280	0.76	+0.7
1,066,174	+		PGA1_c10280	0.76	-1.8
1,066,174	+		PGA1_c10280	0.76	-0.7
1,066,182	-		PGA1_c10280	0.77	+2.7
1,066,182	-		PGA1_c10280	0.77	-2.5
1,066,262	+		PGA1_c10280	0.84	-0.6
1,066,311	+		PGA1_c10280	0.88	-0.5
1,066,446	-				-0.0
1,066,531	+				-0.4
1,066,539	-				+1.4
1,066,614	+				-0.9
1,066,614	+				+0.4
1,066,614	+				-0.4
1,066,622	-				+0.2
1,066,622	-				+0.8
1,066,665	+		PGA1_c10290	0.12	-2.4
1,066,674	-		PGA1_c10290	0.14	-1.3
1,066,702	+		PGA1_c10290	0.18	+0.3
1,066,768	+		PGA1_c10290	0.29	-0.3
1,066,776	-		PGA1_c10290	0.31	+0.1
1,066,788	-		PGA1_c10290	0.33	-0.1
1,066,822	+		PGA1_c10290	0.38	-0.3
1,066,843	+		PGA1_c10290	0.42	+2.4
1,066,900	+		PGA1_c10290	0.51	-0.3
1,067,006	+		PGA1_c10290	0.69	-1.5
1,067,006	-		PGA1_c10290	0.69	-2.2
1,067,011	+		PGA1_c10290	0.70	-0.0
1,067,014	-		PGA1_c10290	0.70	-0.2
1,067,014	-		PGA1_c10290	0.70	-2.0
1,067,019	-		PGA1_c10290	0.71	-0.7
1,067,114	+		PGA1_c10290	0.87	-1.9
1,067,114	+		PGA1_c10290	0.87	-1.3
1,067,122	-		PGA1_c10290	0.88	-2.5
1,067,130	+		PGA1_c10290	0.89	+0.6
1,067,130	+		PGA1_c10290	0.89	+1.0
1,067,135	+				-0.2
1,067,138	-				-0.9
1,067,181	+				-3.2
1,067,205	-				-0.7
1,067,239	+				-1.9
1,067,247	-				-0.9
1,067,270	-				-3.0
1,067,272	+				+0.4
1,067,350	+				-0.1
1,067,404	-				-0.5
1,067,448	+				-1.4