Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0645

Experiment: Chlorite 0.06 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0643 and Psest_0644 are separated by 138 nucleotidesPsest_0644 and Psest_0645 overlap by 17 nucleotidesPsest_0645 and Psest_0646 overlap by 4 nucleotidesPsest_0646 and Psest_0647 overlap by 4 nucleotides Psest_0643: Psest_0643 - exodeoxyribonuclease VII, small subunit, at 698,321 to 698,563 _0643 Psest_0644: Psest_0644 - siderophore ferric iron reductase, AHA_1954 family, at 698,702 to 699,463 _0644 Psest_0645: Psest_0645 - Siderophore synthetase component, at 699,447 to 701,255 _0645 Psest_0646: Psest_0646 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 701,252 to 701,839 _0646 Psest_0647: Psest_0647 - Arabinose efflux permease, at 701,836 to 702,990 _0647 Position (kb) 699 700 701 702Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 698.607 kb on + strandat 698.608 kb on - strandat 698.655 kb on + strandat 698.656 kb on - strandat 698.656 kb on - strandat 698.668 kb on - strandat 698.668 kb on - strandat 699.200 kb on + strand, within Psest_0644at 699.200 kb on + strand, within Psest_0644at 699.220 kb on - strand, within Psest_0644at 699.220 kb on - strand, within Psest_0644at 699.220 kb on - strand, within Psest_0644at 699.220 kb on - strand, within Psest_0644at 699.264 kb on + strand, within Psest_0644at 699.264 kb on + strand, within Psest_0644at 699.399 kb on - strandat 699.463 kb on + strandat 699.463 kb on + strandat 699.464 kb on - strandat 699.643 kb on + strand, within Psest_0645at 699.946 kb on + strand, within Psest_0645at 699.947 kb on - strand, within Psest_0645at 699.947 kb on - strand, within Psest_0645at 699.947 kb on - strand, within Psest_0645at 699.947 kb on - strand, within Psest_0645at 699.973 kb on + strand, within Psest_0645at 699.974 kb on - strand, within Psest_0645at 699.974 kb on - strand, within Psest_0645at 700.186 kb on + strand, within Psest_0645at 700.189 kb on + strand, within Psest_0645at 700.190 kb on - strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.282 kb on + strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.283 kb on - strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.312 kb on + strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.313 kb on - strand, within Psest_0645at 700.453 kb on + strand, within Psest_0645at 700.453 kb on + strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.454 kb on - strand, within Psest_0645at 700.540 kb on + strand, within Psest_0645at 700.540 kb on + strand, within Psest_0645at 700.584 kb on + strand, within Psest_0645at 700.584 kb on + strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.585 kb on - strand, within Psest_0645at 700.617 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.651 kb on + strand, within Psest_0645at 700.652 kb on - strand, within Psest_0645at 700.839 kb on - strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 700.861 kb on + strand, within Psest_0645at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.507 kb on + strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.508 kb on - strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.661 kb on + strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.662 kb on - strand, within Psest_0646at 701.712 kb on + strand, within Psest_0646at 701.713 kb on - strand, within Psest_0646at 701.793 kb on + strandat 702.041 kb on + strand, within Psest_0647at 702.042 kb on - strand, within Psest_0647at 702.099 kb on - strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.218 kb on + strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647at 702.219 kb on - strand, within Psest_0647

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.06 mM
remove
698,607 + +0.9
698,608 - -1.3
698,655 + +0.9
698,656 - +0.3
698,656 - +0.4
698,668 - -1.1
698,668 - +1.9
699,200 + Psest_0644 0.65 +0.5
699,200 + Psest_0644 0.65 +0.9
699,220 - Psest_0644 0.68 -0.7
699,220 - Psest_0644 0.68 -1.1
699,220 - Psest_0644 0.68 -0.7
699,220 - Psest_0644 0.68 +0.9
699,264 + Psest_0644 0.74 -0.4
699,264 + Psest_0644 0.74 +1.5
699,399 - +0.3
699,463 + -0.4
699,463 + -1.9
699,464 - -0.1
699,643 + Psest_0645 0.11 +0.5
699,946 + Psest_0645 0.28 -0.4
699,947 - Psest_0645 0.28 -0.1
699,947 - Psest_0645 0.28 -0.7
699,947 - Psest_0645 0.28 -0.1
699,947 - Psest_0645 0.28 -1.1
699,973 + Psest_0645 0.29 +2.5
699,974 - Psest_0645 0.29 -1.4
699,974 - Psest_0645 0.29 -0.1
700,186 + Psest_0645 0.41 +0.2
700,189 + Psest_0645 0.41 -0.3
700,190 - Psest_0645 0.41 -2.4
700,282 + Psest_0645 0.46 +0.6
700,282 + Psest_0645 0.46 -0.7
700,282 + Psest_0645 0.46 -0.8
700,282 + Psest_0645 0.46 -0.1
700,283 - Psest_0645 0.46 -0.7
700,283 - Psest_0645 0.46 -2.9
700,283 - Psest_0645 0.46 +0.9
700,283 - Psest_0645 0.46 -0.1
700,283 - Psest_0645 0.46 +2.5
700,312 + Psest_0645 0.48 -1.3
700,312 + Psest_0645 0.48 -0.4
700,312 + Psest_0645 0.48 -0.5
700,312 + Psest_0645 0.48 +0.1
700,312 + Psest_0645 0.48 -0.1
700,312 + Psest_0645 0.48 -0.7
700,312 + Psest_0645 0.48 -1.9
700,312 + Psest_0645 0.48 +0.3
700,312 + Psest_0645 0.48 +1.9
700,312 + Psest_0645 0.48 -0.7
700,312 + Psest_0645 0.48 +0.1
700,312 + Psest_0645 0.48 -1.1
700,312 + Psest_0645 0.48 +1.9
700,312 + Psest_0645 0.48 +0.9
700,312 + Psest_0645 0.48 -0.1
700,312 + Psest_0645 0.48 -0.9
700,312 + Psest_0645 0.48 +0.9
700,312 + Psest_0645 0.48 +0.9
700,312 + Psest_0645 0.48 -2.1
700,312 + Psest_0645 0.48 +0.1
700,313 - Psest_0645 0.48 -0.1
700,313 - Psest_0645 0.48 -0.1
700,313 - Psest_0645 0.48 -0.1
700,313 - Psest_0645 0.48 +0.6
700,313 - Psest_0645 0.48 +0.9
700,313 - Psest_0645 0.48 -0.9
700,313 - Psest_0645 0.48 +2.9
700,313 - Psest_0645 0.48 -1.3
700,313 - Psest_0645 0.48 +0.1
700,313 - Psest_0645 0.48 +1.5
700,313 - Psest_0645 0.48 +0.9
700,313 - Psest_0645 0.48 -1.1
700,313 - Psest_0645 0.48 -1.4
700,453 + Psest_0645 0.56 -0.7
700,453 + Psest_0645 0.56 -2.3
700,454 - Psest_0645 0.56 -0.5
700,454 - Psest_0645 0.56 -0.1
700,454 - Psest_0645 0.56 -0.4
700,540 + Psest_0645 0.60 -0.7
700,540 + Psest_0645 0.60 -0.5
700,584 + Psest_0645 0.63 +0.5
700,584 + Psest_0645 0.63 -1.1
700,585 - Psest_0645 0.63 -0.2
700,585 - Psest_0645 0.63 +0.9
700,585 - Psest_0645 0.63 -0.4
700,617 + Psest_0645 0.65 -1.1
700,651 + Psest_0645 0.67 +0.1
700,651 + Psest_0645 0.67 -0.4
700,651 + Psest_0645 0.67 +0.6
700,652 - Psest_0645 0.67 +1.9
700,839 - Psest_0645 0.77 -0.1
700,861 + Psest_0645 0.78 -2.1
700,861 + Psest_0645 0.78 -1.4
700,861 + Psest_0645 0.78 +0.9
700,861 + Psest_0645 0.78 -0.1
700,861 + Psest_0645 0.78 -2.1
701,507 + Psest_0646 0.43 -0.9
701,507 + Psest_0646 0.43 +0.9
701,507 + Psest_0646 0.43 -1.7
701,507 + Psest_0646 0.43 -1.1
701,508 - Psest_0646 0.44 -0.7
701,508 - Psest_0646 0.44 +2.3
701,508 - Psest_0646 0.44 +1.7
701,661 + Psest_0646 0.70 -1.1
701,661 + Psest_0646 0.70 +1.9
701,662 - Psest_0646 0.70 +0.3
701,662 - Psest_0646 0.70 +0.9
701,662 - Psest_0646 0.70 +1.5
701,662 - Psest_0646 0.70 +2.6
701,662 - Psest_0646 0.70 -0.7
701,662 - Psest_0646 0.70 +0.5
701,712 + Psest_0646 0.78 -1.1
701,713 - Psest_0646 0.78 +0.9
701,793 + +0.9
702,041 + Psest_0647 0.18 -0.7
702,042 - Psest_0647 0.18 +2.5
702,099 - Psest_0647 0.23 +2.4
702,218 + Psest_0647 0.33 +1.9
702,218 + Psest_0647 0.33 -0.4
702,219 - Psest_0647 0.33 -0.4
702,219 - Psest_0647 0.33 +0.9

Or see this region's nucleotide sequence