Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3817

Experiment: Chlorite 0.06 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3815 and Psest_3816 are separated by 115 nucleotidesPsest_3816 and Psest_3817 are separated by 60 nucleotidesPsest_3817 and Psest_3818 are separated by 104 nucleotidesPsest_3818 and Psest_3819 are separated by 43 nucleotides Psest_3815: Psest_3815 - guanylate kinase, at 3,985,421 to 3,986,041 _3815 Psest_3816: Psest_3816 - DNA-directed RNA polymerase, omega subunit, at 3,986,157 to 3,986,420 _3816 Psest_3817: Psest_3817 - (p)ppGpp synthetase, RelA/SpoT family, at 3,986,481 to 3,988,589 _3817 Psest_3818: Psest_3818 - endoribonuclease L-PSP, putative, at 3,988,694 to 3,989,074 _3818 Psest_3819: Psest_3819 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 3,989,118 to 3,989,690 _3819 Position (kb) 3986 3987 3988 3989Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3986.040 kb on - strandat 3986.097 kb on + strandat 3986.102 kb on + strandat 3986.337 kb on + strand, within Psest_3816at 3986.337 kb on + strand, within Psest_3816at 3988.655 kb on - strandat 3988.745 kb on + strand, within Psest_3818at 3988.745 kb on + strand, within Psest_3818at 3988.746 kb on - strand, within Psest_3818at 3988.746 kb on - strand, within Psest_3818at 3988.746 kb on - strand, within Psest_3818at 3988.746 kb on - strand, within Psest_3818at 3988.746 kb on - strand, within Psest_3818at 3988.771 kb on + strand, within Psest_3818at 3988.778 kb on + strand, within Psest_3818at 3988.778 kb on + strand, within Psest_3818at 3988.778 kb on + strand, within Psest_3818at 3988.778 kb on + strand, within Psest_3818at 3988.779 kb on - strand, within Psest_3818at 3988.779 kb on - strand, within Psest_3818at 3988.779 kb on - strand, within Psest_3818at 3989.083 kb on + strandat 3989.083 kb on + strandat 3989.084 kb on - strandat 3989.084 kb on - strandat 3989.144 kb on + strandat 3989.247 kb on + strand, within Psest_3819at 3989.248 kb on - strand, within Psest_3819

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.06 mM
remove
3,986,040 - +0.2
3,986,097 + -0.5
3,986,102 + +0.9
3,986,337 + Psest_3816 0.68 -0.9
3,986,337 + Psest_3816 0.68 -3.3
3,988,655 - -0.5
3,988,745 + Psest_3818 0.13 +2.1
3,988,745 + Psest_3818 0.13 -0.8
3,988,746 - Psest_3818 0.14 +0.8
3,988,746 - Psest_3818 0.14 -0.1
3,988,746 - Psest_3818 0.14 -0.1
3,988,746 - Psest_3818 0.14 -0.1
3,988,746 - Psest_3818 0.14 +0.9
3,988,771 + Psest_3818 0.20 +0.6
3,988,778 + Psest_3818 0.22 -0.1
3,988,778 + Psest_3818 0.22 -0.9
3,988,778 + Psest_3818 0.22 -0.1
3,988,778 + Psest_3818 0.22 -0.4
3,988,779 - Psest_3818 0.22 +0.7
3,988,779 - Psest_3818 0.22 +0.1
3,988,779 - Psest_3818 0.22 +0.2
3,989,083 + -0.1
3,989,083 + -0.3
3,989,084 - -0.5
3,989,084 - -0.1
3,989,144 + -0.4
3,989,247 + Psest_3819 0.23 -1.2
3,989,248 - Psest_3819 0.23 -0.1

Or see this region's nucleotide sequence