Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1766

Experiment: Chlorite 0.06 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1765 and Psest_1766 are separated by 154 nucleotidesPsest_1766 and Psest_1767 overlap by 1 nucleotides Psest_1765: Psest_1765 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,865,823 to 1,867,292 _1765 Psest_1766: Psest_1766 - Signal transduction histidine kinase, at 1,867,447 to 1,868,640 _1766 Psest_1767: Psest_1767 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,868,640 to 1,870,037 _1767 Position (kb) 1867 1868 1869Strain fitness (log2 ratio) -1 0 1 2at 1866.617 kb on + strand, within Psest_1765at 1866.732 kb on + strand, within Psest_1765at 1866.732 kb on + strand, within Psest_1765at 1866.732 kb on + strand, within Psest_1765at 1866.935 kb on + strand, within Psest_1765at 1867.131 kb on + strand, within Psest_1765at 1867.131 kb on + strand, within Psest_1765at 1867.131 kb on + strand, within Psest_1765at 1867.131 kb on + strand, within Psest_1765at 1867.290 kb on + strandat 1867.291 kb on - strandat 1867.347 kb on + strandat 1867.360 kb on + strandat 1867.361 kb on - strandat 1867.482 kb on - strandat 1867.494 kb on + strandat 1867.494 kb on + strandat 1867.494 kb on + strandat 1867.494 kb on + strandat 1867.494 kb on + strandat 1867.495 kb on - strandat 1867.495 kb on - strandat 1867.495 kb on - strandat 1867.495 kb on - strandat 1867.495 kb on - strandat 1867.589 kb on + strand, within Psest_1766at 1867.589 kb on + strand, within Psest_1766at 1867.589 kb on + strand, within Psest_1766at 1867.589 kb on + strand, within Psest_1766at 1867.590 kb on - strand, within Psest_1766at 1867.698 kb on - strand, within Psest_1766at 1867.772 kb on + strand, within Psest_1766at 1867.773 kb on - strand, within Psest_1766at 1867.866 kb on + strand, within Psest_1766at 1867.866 kb on + strand, within Psest_1766at 1867.867 kb on - strand, within Psest_1766at 1867.867 kb on - strand, within Psest_1766at 1868.025 kb on - strand, within Psest_1766at 1868.028 kb on + strand, within Psest_1766at 1868.029 kb on - strand, within Psest_1766at 1868.029 kb on - strand, within Psest_1766at 1868.039 kb on + strand, within Psest_1766at 1868.039 kb on + strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.040 kb on - strand, within Psest_1766at 1868.041 kb on + strand, within Psest_1766at 1868.041 kb on + strand, within Psest_1766at 1868.041 kb on + strand, within Psest_1766at 1868.041 kb on + strand, within Psest_1766at 1868.042 kb on - strand, within Psest_1766at 1868.409 kb on + strand, within Psest_1766at 1868.409 kb on + strand, within Psest_1766at 1868.409 kb on + strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.410 kb on - strand, within Psest_1766at 1868.653 kb on + strandat 1868.653 kb on + strandat 1868.653 kb on + strandat 1868.653 kb on + strandat 1868.653 kb on + strandat 1868.654 kb on - strandat 1868.654 kb on - strandat 1868.696 kb on + strandat 1868.697 kb on - strandat 1868.698 kb on + strandat 1868.977 kb on + strand, within Psest_1767at 1868.977 kb on + strand, within Psest_1767at 1868.977 kb on + strand, within Psest_1767at 1868.978 kb on - strand, within Psest_1767at 1868.978 kb on - strand, within Psest_1767at 1869.048 kb on - strand, within Psest_1767at 1869.137 kb on - strand, within Psest_1767at 1869.137 kb on - strand, within Psest_1767at 1869.137 kb on - strand, within Psest_1767at 1869.147 kb on + strand, within Psest_1767at 1869.173 kb on + strand, within Psest_1767at 1869.173 kb on + strand, within Psest_1767at 1869.186 kb on - strand, within Psest_1767at 1869.416 kb on + strand, within Psest_1767at 1869.416 kb on + strand, within Psest_1767at 1869.417 kb on - strand, within Psest_1767at 1869.417 kb on - strand, within Psest_1767at 1869.419 kb on + strand, within Psest_1767at 1869.419 kb on + strand, within Psest_1767at 1869.419 kb on + strand, within Psest_1767at 1869.419 kb on + strand, within Psest_1767at 1869.472 kb on + strand, within Psest_1767at 1869.501 kb on + strand, within Psest_1767at 1869.501 kb on + strand, within Psest_1767at 1869.502 kb on - strand, within Psest_1767at 1869.502 kb on - strand, within Psest_1767at 1869.502 kb on - strand, within Psest_1767at 1869.505 kb on - strand, within Psest_1767

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.06 mM
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1,866,617 + Psest_1765 0.54 +1.1
1,866,732 + Psest_1765 0.62 +0.9
1,866,732 + Psest_1765 0.62 +1.2
1,866,732 + Psest_1765 0.62 +1.3
1,866,935 + Psest_1765 0.76 -0.1
1,867,131 + Psest_1765 0.89 +1.5
1,867,131 + Psest_1765 0.89 +0.7
1,867,131 + Psest_1765 0.89 +1.6
1,867,131 + Psest_1765 0.89 +1.3
1,867,290 + -0.2
1,867,291 - +1.3
1,867,347 + +0.5
1,867,360 + -0.4
1,867,361 - +0.6
1,867,482 - +0.3
1,867,494 + -0.2
1,867,494 + -0.6
1,867,494 + -0.4
1,867,494 + +0.1
1,867,494 + -1.0
1,867,495 - -0.4
1,867,495 - +0.8
1,867,495 - +0.7
1,867,495 - +0.4
1,867,495 - +0.3
1,867,589 + Psest_1766 0.12 -0.2
1,867,589 + Psest_1766 0.12 +0.4
1,867,589 + Psest_1766 0.12 +0.8
1,867,589 + Psest_1766 0.12 -0.3
1,867,590 - Psest_1766 0.12 +0.0
1,867,698 - Psest_1766 0.21 +0.8
1,867,772 + Psest_1766 0.27 -0.2
1,867,773 - Psest_1766 0.27 +1.1
1,867,866 + Psest_1766 0.35 -0.2
1,867,866 + Psest_1766 0.35 +0.0
1,867,867 - Psest_1766 0.35 +0.9
1,867,867 - Psest_1766 0.35 +0.9
1,868,025 - Psest_1766 0.48 +0.1
1,868,028 + Psest_1766 0.49 +0.0
1,868,029 - Psest_1766 0.49 +0.9
1,868,029 - Psest_1766 0.49 +0.8
1,868,039 + Psest_1766 0.50 -0.6
1,868,039 + Psest_1766 0.50 -0.1
1,868,040 - Psest_1766 0.50 +0.1
1,868,040 - Psest_1766 0.50 +1.1
1,868,040 - Psest_1766 0.50 -1.1
1,868,040 - Psest_1766 0.50 +0.6
1,868,040 - Psest_1766 0.50 +0.8
1,868,040 - Psest_1766 0.50 -1.1
1,868,040 - Psest_1766 0.50 -0.0
1,868,040 - Psest_1766 0.50 -0.1
1,868,040 - Psest_1766 0.50 -1.4
1,868,041 + Psest_1766 0.50 +0.9
1,868,041 + Psest_1766 0.50 -0.2
1,868,041 + Psest_1766 0.50 -0.2
1,868,041 + Psest_1766 0.50 -0.0
1,868,042 - Psest_1766 0.50 -0.4
1,868,409 + Psest_1766 0.81 +0.8
1,868,409 + Psest_1766 0.81 -0.5
1,868,409 + Psest_1766 0.81 -0.3
1,868,410 - Psest_1766 0.81 +0.3
1,868,410 - Psest_1766 0.81 +0.1
1,868,410 - Psest_1766 0.81 +0.5
1,868,410 - Psest_1766 0.81 +0.0
1,868,410 - Psest_1766 0.81 +1.5
1,868,410 - Psest_1766 0.81 +0.3
1,868,410 - Psest_1766 0.81 +0.8
1,868,653 + -1.2
1,868,653 + -0.7
1,868,653 + -0.5
1,868,653 + +0.2
1,868,653 + -1.0
1,868,654 - +0.2
1,868,654 - -0.7
1,868,696 + +0.4
1,868,697 - +2.0
1,868,698 + +1.5
1,868,977 + Psest_1767 0.24 +0.1
1,868,977 + Psest_1767 0.24 -0.1
1,868,977 + Psest_1767 0.24 +0.0
1,868,978 - Psest_1767 0.24 +0.1
1,868,978 - Psest_1767 0.24 +0.5
1,869,048 - Psest_1767 0.29 +0.0
1,869,137 - Psest_1767 0.36 +0.0
1,869,137 - Psest_1767 0.36 -0.6
1,869,137 - Psest_1767 0.36 +0.1
1,869,147 + Psest_1767 0.36 +1.2
1,869,173 + Psest_1767 0.38 +0.2
1,869,173 + Psest_1767 0.38 -0.7
1,869,186 - Psest_1767 0.39 -0.8
1,869,416 + Psest_1767 0.56 +0.6
1,869,416 + Psest_1767 0.56 +1.6
1,869,417 - Psest_1767 0.56 +1.0
1,869,417 - Psest_1767 0.56 +0.1
1,869,419 + Psest_1767 0.56 -1.0
1,869,419 + Psest_1767 0.56 +1.0
1,869,419 + Psest_1767 0.56 +0.2
1,869,419 + Psest_1767 0.56 -0.8
1,869,472 + Psest_1767 0.60 -0.7
1,869,501 + Psest_1767 0.62 -0.3
1,869,501 + Psest_1767 0.62 +0.3
1,869,502 - Psest_1767 0.62 +0.5
1,869,502 - Psest_1767 0.62 -1.0
1,869,502 - Psest_1767 0.62 -0.5
1,869,505 - Psest_1767 0.62 +0.2

Or see this region's nucleotide sequence