Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1732

Experiment: Chlorite 0.06 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1729 and Psest_1730 are separated by 40 nucleotidesPsest_1730 and Psest_1731 are separated by 1 nucleotidesPsest_1731 and Psest_1732 overlap by 1 nucleotidesPsest_1732 and Psest_1733 are separated by 12 nucleotidesPsest_1733 and Psest_1734 are separated by 6 nucleotides Psest_1729: Psest_1729 - flagellar motor switch protein FliM, at 1,835,251 to 1,836,222 _1729 Psest_1730: Psest_1730 - flagellar motor switch protein FliN, at 1,836,263 to 1,836,736 _1730 Psest_1731: Psest_1731 - flagellar biosynthetic protein FliO, at 1,836,738 to 1,837,157 _1731 Psest_1732: Psest_1732 - flagellar biosynthetic protein FliP, at 1,837,157 to 1,837,933 _1732 Psest_1733: Psest_1733 - flagellar biosynthetic protein FliQ, at 1,837,946 to 1,838,215 _1733 Psest_1734: Psest_1734 - flagellar biosynthetic protein FliR, at 1,838,222 to 1,838,998 _1734 Position (kb) 1837 1838Strain fitness (log2 ratio) -1 0 1 2 3at 1836.233 kb on + strandat 1836.234 kb on - strandat 1836.815 kb on + strand, within Psest_1731at 1837.174 kb on - strandat 1837.269 kb on + strand, within Psest_1732at 1837.276 kb on - strand, within Psest_1732at 1837.280 kb on - strand, within Psest_1732at 1837.280 kb on - strand, within Psest_1732at 1837.539 kb on - strand, within Psest_1732at 1837.539 kb on - strand, within Psest_1732at 1837.661 kb on - strand, within Psest_1732at 1837.661 kb on - strand, within Psest_1732at 1837.661 kb on - strand, within Psest_1732at 1837.931 kb on + strandat 1838.164 kb on + strand, within Psest_1733at 1838.171 kb on + strand, within Psest_1733at 1838.171 kb on + strand, within Psest_1733at 1838.172 kb on - strand, within Psest_1733at 1838.227 kb on - strandat 1838.354 kb on + strand, within Psest_1734at 1838.355 kb on - strand, within Psest_1734at 1838.614 kb on + strand, within Psest_1734at 1838.614 kb on + strand, within Psest_1734at 1838.614 kb on + strand, within Psest_1734at 1838.615 kb on - strand, within Psest_1734at 1838.615 kb on - strand, within Psest_1734at 1838.615 kb on - strand, within Psest_1734at 1838.615 kb on - strand, within Psest_1734at 1838.615 kb on - strand, within Psest_1734at 1838.658 kb on + strand, within Psest_1734at 1838.659 kb on - strand, within Psest_1734at 1838.858 kb on - strand, within Psest_1734

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Per-strain Table

Position Strand Gene LocusTag Fraction Chlorite 0.06 mM
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1,836,233 + -1.5
1,836,234 - +1.8
1,836,815 + Psest_1731 0.18 +2.1
1,837,174 - +1.9
1,837,269 + Psest_1732 0.14 +2.5
1,837,276 - Psest_1732 0.15 +1.9
1,837,280 - Psest_1732 0.16 +3.2
1,837,280 - Psest_1732 0.16 +2.2
1,837,539 - Psest_1732 0.49 +1.8
1,837,539 - Psest_1732 0.49 -1.5
1,837,661 - Psest_1732 0.65 +2.2
1,837,661 - Psest_1732 0.65 +2.0
1,837,661 - Psest_1732 0.65 +2.3
1,837,931 + -1.1
1,838,164 + Psest_1733 0.81 +2.2
1,838,171 + Psest_1733 0.83 +1.7
1,838,171 + Psest_1733 0.83 +2.5
1,838,172 - Psest_1733 0.84 +2.2
1,838,227 - +1.1
1,838,354 + Psest_1734 0.17 +1.6
1,838,355 - Psest_1734 0.17 +2.0
1,838,614 + Psest_1734 0.50 +2.3
1,838,614 + Psest_1734 0.50 +2.2
1,838,614 + Psest_1734 0.50 +2.7
1,838,615 - Psest_1734 0.51 +2.2
1,838,615 - Psest_1734 0.51 +0.9
1,838,615 - Psest_1734 0.51 +2.4
1,838,615 - Psest_1734 0.51 +2.0
1,838,615 - Psest_1734 0.51 +2.4
1,838,658 + Psest_1734 0.56 +2.5
1,838,659 - Psest_1734 0.56 +2.2
1,838,858 - Psest_1734 0.82 +1.7

Or see this region's nucleotide sequence