Strain Fitness in Shewanella amazonensis SB2B around Sama_3386

Experiment: Lomefloxacin 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
4,012,755	+		Sama_3385	0.36	-0.3
4,012,755	+		Sama_3385	0.36	-0.9
4,012,755	+		Sama_3385	0.36	+1.3
4,012,756	-		Sama_3385	0.36	-1.0
4,012,756	-		Sama_3385	0.36	-0.8
4,012,756	-		Sama_3385	0.36	-1.0
4,012,840	+		Sama_3385	0.42	-0.7
4,012,840	+		Sama_3385	0.42	-2.1
4,012,840	+		Sama_3385	0.42	+0.2
4,012,840	+		Sama_3385	0.42	-1.1
4,012,840	+		Sama_3385	0.42	-1.5
4,012,840	+		Sama_3385	0.42	-1.4
4,012,840	+		Sama_3385	0.42	+0.0
4,012,840	+		Sama_3385	0.42	-1.0
4,012,840	+		Sama_3385	0.42	-1.3
4,012,841	-		Sama_3385	0.42	-0.9
4,012,841	-		Sama_3385	0.42	-1.9
4,012,841	-		Sama_3385	0.42	-0.9
4,012,841	-		Sama_3385	0.42	-0.4
4,012,841	-		Sama_3385	0.42	-3.0
4,012,855	+		Sama_3385	0.43	+1.5
4,012,855	+		Sama_3385	0.43	-0.6
4,012,855	+		Sama_3385	0.43	-0.8
4,012,855	+		Sama_3385	0.43	+0.6
4,012,856	-		Sama_3385	0.43	-2.5
4,012,856	-		Sama_3385	0.43	-0.0
4,012,856	-		Sama_3385	0.43	+0.3
4,013,040	+		Sama_3385	0.55	-1.8
4,013,040	+		Sama_3385	0.55	-1.3
4,013,041	-		Sama_3385	0.55	-2.0
4,013,041	-		Sama_3385	0.55	-1.3
4,013,041	-		Sama_3385	0.55	-0.3
4,013,044	+		Sama_3385	0.55	-0.8
4,013,044	+		Sama_3385	0.55	-2.2
4,013,044	+		Sama_3385	0.55	-1.1
4,013,045	-		Sama_3385	0.55	-2.1
4,013,045	-		Sama_3385	0.55	-2.1
4,013,045	-		Sama_3385	0.55	-1.1
4,013,045	-		Sama_3385	0.55	-1.7
4,013,045	-		Sama_3385	0.55	-0.6
4,013,045	-		Sama_3385	0.55	-0.9
4,013,045	-		Sama_3385	0.55	-1.3
4,013,068	-		Sama_3385	0.56	-1.5
4,013,068	-		Sama_3385	0.56	-2.4
4,013,072	+		Sama_3385	0.57	-1.0
4,013,072	+		Sama_3385	0.57	-1.6
4,013,072	+		Sama_3385	0.57	-1.4
4,013,072	+		Sama_3385	0.57	-2.4
4,013,073	-		Sama_3385	0.57	+0.6
4,013,073	-		Sama_3385	0.57	-0.5
4,013,073	-		Sama_3385	0.57	-0.9
4,013,073	-		Sama_3385	0.57	-0.5
4,013,073	-		Sama_3385	0.57	+0.3
4,013,113	-		Sama_3385	0.59	-1.2
4,013,127	+		Sama_3385	0.60	-2.2
4,013,127	+		Sama_3385	0.60	-0.7
4,013,128	-		Sama_3385	0.60	-2.8
4,013,128	-		Sama_3385	0.60	-1.6
4,013,128	-		Sama_3385	0.60	-1.1
4,013,128	-		Sama_3385	0.60	-1.1
4,013,194	+		Sama_3385	0.65	-1.0
4,013,195	-		Sama_3385	0.65	-0.1
4,013,195	-		Sama_3385	0.65	-0.2
4,013,299	-		Sama_3385	0.71	-0.9
4,013,299	-		Sama_3385	0.71	-1.2
4,013,385	-		Sama_3385	0.77	-1.9
4,013,418	+		Sama_3385	0.79	+0.4
4,013,418	+		Sama_3385	0.79	-1.1
4,013,445	+		Sama_3385	0.81	+0.2
4,013,446	-		Sama_3385	0.81	+0.2
4,013,565	+		Sama_3385	0.88	+0.3
4,013,826	+		Sama_3386	0.19	-1.2
4,013,826	+		Sama_3386	0.19	-0.8
4,013,826	+		Sama_3386	0.19	-0.9
4,013,826	+		Sama_3386	0.19	-1.3
4,013,826	+		Sama_3386	0.19	-2.2
4,013,827	-		Sama_3386	0.20	+0.1
4,013,827	-		Sama_3386	0.20	-0.5
4,013,827	-		Sama_3386	0.20	-0.9
4,013,827	-		Sama_3386	0.20	-1.2
4,013,827	-		Sama_3386	0.20	-0.9
4,013,827	-		Sama_3386	0.20	-1.6
4,013,835	+		Sama_3386	0.22	-2.7
4,013,835	+		Sama_3386	0.22	-2.0
4,013,836	-		Sama_3386	0.22	-2.4
4,013,836	-		Sama_3386	0.22	-0.8
4,013,836	-		Sama_3386	0.22	-0.3
4,013,877	+		Sama_3386	0.31	-0.5
4,013,877	+		Sama_3386	0.31	-1.5
4,013,877	+		Sama_3386	0.31	-0.7
4,013,877	+		Sama_3386	0.31	-1.1
4,013,877	+		Sama_3386	0.31	-2.1
4,013,877	+		Sama_3386	0.31	-1.5
4,013,877	+		Sama_3386	0.31	-1.6
4,013,878	-		Sama_3386	0.31	-0.7
4,013,878	-		Sama_3386	0.31	-1.7
4,013,878	-		Sama_3386	0.31	-2.4
4,013,878	-		Sama_3386	0.31	-2.4
4,013,883	+		Sama_3386	0.33	-0.6
4,013,883	+		Sama_3386	0.33	-3.1
4,013,884	-		Sama_3386	0.33	-2.2
4,013,940	+		Sama_3386	0.46	-1.9
4,013,940	+		Sama_3386	0.46	+0.0
4,013,940	+		Sama_3386	0.46	-0.3
4,013,940	+		Sama_3386	0.46	-0.3
4,013,941	-		Sama_3386	0.46	-0.4
4,013,941	-		Sama_3386	0.46	+0.4
4,013,941	-		Sama_3386	0.46	-0.8
4,013,941	-		Sama_3386	0.46	+0.3
4,014,022	-		Sama_3386	0.65	-1.0
4,014,022	-		Sama_3386	0.65	-0.7
4,014,066	+		Sama_3386	0.75	-0.3
4,014,066	+		Sama_3386	0.75	-1.2
4,014,095	+		Sama_3386	0.82	-0.6
4,014,095	+		Sama_3386	0.82	-0.9
4,014,095	+		Sama_3386	0.82	-0.8
4,014,095	+		Sama_3386	0.82	-0.3
4,014,095	+		Sama_3386	0.82	-0.4
4,014,096	-		Sama_3386	0.82	-2.1
4,014,096	-		Sama_3386	0.82	-0.9
4,014,096	-		Sama_3386	0.82	-1.7
4,014,096	-		Sama_3386	0.82	+0.9
4,014,096	-		Sama_3386	0.82	-1.9
4,014,096	-		Sama_3386	0.82	-0.8
4,014,127	+		Sama_3386	0.89	+0.0
4,014,127	+		Sama_3386	0.89	-1.6
4,014,127	+		Sama_3386	0.89	+0.3
4,014,128	-		Sama_3386	0.89	-2.0
4,014,208	+				+0.2
4,014,208	+				-2.4
4,014,208	+				-2.2
4,014,209	-				-1.3
4,014,209	-				-0.4
4,014,209	-				-1.7
4,014,209	-				-1.4
4,014,213	+				-0.6
4,014,213	+				-1.5
4,014,213	+				-0.6
4,014,213	+				-0.3
4,014,213	+				-2.3
4,014,214	-				-1.3
4,014,214	-				-1.2
4,014,214	-				-0.4
4,014,214	-				+0.1
4,014,214	-				-2.4
4,014,214	-				-0.1
4,014,214	-				-1.4
4,014,214	-				-2.1
4,014,214	-				-1.4
4,014,214	-				-0.2
4,014,214	-				-0.4
4,014,214	-				-1.2
4,014,214	-				-0.9
4,014,215	+				-2.0
4,014,215	+				-2.4
4,014,215	+				-2.2
4,014,215	+				-0.8
4,014,215	+				-1.4
4,014,215	+				-0.7
4,014,215	+				-3.2
4,014,215	+				-0.1
4,014,215	+				-1.6
4,014,215	+				-1.0
4,014,215	+				-1.8
4,014,216	-				-3.0
4,014,216	-				-1.6
4,014,216	-				-2.0
4,014,216	-				+0.9
4,014,216	-				-1.3
4,014,216	-				-1.4
4,014,216	-				-1.4
4,014,216	-				-1.4
4,014,216	-				-1.3
4,014,216	-				-1.1
4,014,223	+				-0.7
4,014,223	+				-2.3
4,014,223	+				-2.6
4,014,223	+				+0.1
4,014,223	+				-0.8
4,014,223	+				-2.3
4,014,223	+				-0.6
4,014,223	+				-1.1
4,014,224	-				-1.2
4,014,224	-				-1.4
4,014,224	-				-1.7
4,014,224	-				-0.7
4,014,224	-				-1.8
4,014,224	-				-2.1
4,014,224	-				-0.4
4,014,227	+				-3.4
4,014,227	+				-0.9
4,014,227	+				-2.7
4,014,227	+				-1.5
4,014,227	+				-1.1
4,014,227	+				-2.5
4,014,227	+				-0.1
4,014,227	+				-2.8
4,014,227	+				-2.1
4,014,228	-				-2.3
4,014,228	-				-1.5
4,014,228	-				-2.7
4,014,228	-				-2.7
4,014,228	-				-0.1
4,014,228	-				-1.3
4,014,228	-				-2.3
4,014,260	-				-2.1
4,014,269	+				-2.8
4,014,269	+				-1.7
4,014,269	+				-2.9
4,014,269	+				-0.9
4,014,269	+				-3.9
4,014,269	+				-0.9
4,014,269	+				-2.2
4,014,269	+				-1.7
4,014,269	+				-1.7
4,014,269	+				-1.6
4,014,269	+				+0.2
4,014,269	+				-1.7
4,014,269	+				-3.3
4,014,269	+				-3.0
4,014,269	+				-2.2
4,014,269	+				-1.0
4,014,269	+				-2.2
4,014,269	+				-3.8
4,014,270	-				-1.4
4,014,270	-				-2.4
4,014,270	-				-1.1
4,014,270	-				-2.6
4,014,270	-				-1.1
4,014,308	-		Sama_3387	0.11	-2.4
4,014,320	+		Sama_3387	0.13	-2.3
4,014,320	+		Sama_3387	0.13	-0.3
4,014,424	+		Sama_3387	0.27	-3.8
4,014,424	+		Sama_3387	0.27	-3.2
4,014,511	+		Sama_3387	0.39	-2.7
4,014,521	-		Sama_3387	0.40	-0.6
4,014,599	+		Sama_3387	0.51	-0.8
4,014,599	+		Sama_3387	0.51	-2.3
4,014,600	-		Sama_3387	0.51	-0.9
4,014,600	-		Sama_3387	0.51	-0.1
4,014,604	+		Sama_3387	0.51	-1.1
4,014,641	+		Sama_3387	0.56	-1.4
4,014,642	-		Sama_3387	0.57	-0.1
4,014,728	+		Sama_3387	0.68	-0.9
4,014,730	+		Sama_3387	0.69	-3.4
4,014,830	+		Sama_3387	0.82	-2.9
4,014,830	+		Sama_3387	0.82	-2.4
4,014,830	+		Sama_3387	0.82	-3.3
4,014,849	-		Sama_3387	0.85	-0.8
4,014,849	-		Sama_3387	0.85	-1.9
4,014,958	-				-1.2
4,014,958	-				+0.3
4,014,963	-				-2.1
4,014,963	-				-0.1
4,014,963	-				-2.1
4,014,994	+				-0.3
4,014,994	+				-0.2
4,015,035	+				-1.7
4,015,035	+				-2.3
4,015,075	+				-1.1
4,015,075	+				-3.2
4,015,075	+				-1.4
4,015,075	+				-0.4
4,015,076	-				-1.4
4,015,076	-				-1.7