Strain Fitness in Shewanella amazonensis SB2B around Sama_3365

Experiment: Lomefloxacin 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
3,989,907	-				+0.9
3,990,036	-				-1.8
3,990,036	-				-1.4
3,990,043	+				-1.1
3,990,088	-				-3.8
3,990,185	+		Sama_3363	0.18	-1.7
3,990,185	+		Sama_3363	0.18	-2.8
3,990,185	+		Sama_3363	0.18	-4.3
3,990,186	-		Sama_3363	0.19	-3.0
3,990,186	-		Sama_3363	0.19	-2.5
3,990,189	+		Sama_3363	0.19	-2.9
3,990,212	+		Sama_3363	0.25	-1.8
3,990,304	-		Sama_3363	0.50	-3.9
3,990,310	+		Sama_3363	0.51	-1.7
3,990,323	+		Sama_3363	0.55	-2.7
3,990,400	-		Sama_3363	0.75	-2.1
3,990,408	+		Sama_3363	0.77	-2.7
3,990,409	-		Sama_3363	0.77	-3.8
3,990,432	-		Sama_3363	0.83	-1.1
3,990,432	-		Sama_3363	0.83	-0.7
3,990,453	+		Sama_3363	0.89	-2.1
3,990,493	+				-2.3
3,990,494	-				-2.7
3,990,526	+		Sama_3364	0.10	-1.5
3,990,526	+		Sama_3364	0.10	-1.8
3,990,526	+		Sama_3364	0.10	-3.2
3,990,527	-		Sama_3364	0.11	-0.2
3,990,527	-		Sama_3364	0.11	-0.9
3,990,612	+		Sama_3364	0.57	-2.4
3,990,612	+		Sama_3364	0.57	-0.1
3,990,612	+		Sama_3364	0.57	-2.8
3,990,613	-		Sama_3364	0.58	-1.9
3,990,613	-		Sama_3364	0.58	+0.8
3,990,613	-		Sama_3364	0.58	-0.8
3,990,613	-		Sama_3364	0.58	-2.7
3,990,613	-		Sama_3364	0.58	-0.8
3,990,613	-		Sama_3364	0.58	-0.3
3,990,614	+		Sama_3364	0.58	-0.8
3,990,614	+		Sama_3364	0.58	-0.5
3,990,615	-		Sama_3364	0.59	-1.1
3,990,631	+		Sama_3364	0.68	-0.8
3,990,644	+		Sama_3364	0.75	-1.7
3,990,645	-		Sama_3364	0.75	-1.1
3,990,645	-		Sama_3364	0.75	-2.1
3,990,659	+		Sama_3364	0.83	-1.5
3,990,659	+		Sama_3364	0.83	+1.9
3,990,659	+		Sama_3364	0.83	-2.2
3,990,660	-		Sama_3364	0.84	-0.7
3,990,660	-		Sama_3364	0.84	-1.4
3,990,680	-				-0.7
3,990,687	+				+0.1
3,990,688	-				-0.6
3,990,688	-				-1.1
3,990,691	-				-1.5
3,990,846	-		Sama_3365	0.15	-1.4
3,990,893	-		Sama_3365	0.21	-0.9
3,990,893	-		Sama_3365	0.21	+0.7
3,990,954	+		Sama_3365	0.28	-1.4
3,990,971	+		Sama_3365	0.30	-1.1
3,990,971	+		Sama_3365	0.30	-0.7
3,990,972	-		Sama_3365	0.30	-1.9
3,990,990	+		Sama_3365	0.32	-2.5
3,991,064	+		Sama_3365	0.41	-0.3
3,991,184	+		Sama_3365	0.55	-0.7
3,991,260	+		Sama_3365	0.64	-1.1
3,991,284	-		Sama_3365	0.67	-1.4
3,991,368	+		Sama_3365	0.77	-1.9
3,991,419	-		Sama_3365	0.83	-1.1
3,991,534	+				-1.7
3,991,535	-				-2.1
3,991,587	-				-3.1
3,991,655	+				-1.7
3,991,656	-				+0.1
3,991,703	+				-1.7
3,991,703	+				-0.1
3,991,703	+				+0.4
3,991,754	+				-1.2
3,991,754	+				-0.1
3,991,754	+				-0.7
3,991,755	-				+0.7
3,991,755	-				-0.7
3,991,755	-				-0.6
3,991,755	-				+0.3
3,991,755	-				-0.4
3,991,755	-				-2.5
3,991,768	+		Sama_3366	0.10	+2.2
3,991,768	+		Sama_3366	0.10	-1.3
3,991,769	-		Sama_3366	0.10	-1.3
3,991,769	-		Sama_3366	0.10	-1.8
3,991,772	-		Sama_3366	0.10	-1.5
3,991,779	+		Sama_3366	0.11	-1.7
3,991,779	+		Sama_3366	0.11	+0.2
3,991,779	+		Sama_3366	0.11	-1.0
3,991,779	+		Sama_3366	0.11	-1.3
3,991,779	+		Sama_3366	0.11	-0.3
3,991,779	+		Sama_3366	0.11	-1.1
3,991,780	-		Sama_3366	0.11	-1.0
3,991,780	-		Sama_3366	0.11	-0.2
3,991,780	-		Sama_3366	0.11	-0.5
3,991,785	+		Sama_3366	0.11	-2.2
3,991,785	+		Sama_3366	0.11	-2.6
3,991,785	+		Sama_3366	0.11	-1.9
3,991,785	+		Sama_3366	0.11	-2.0
3,991,786	-		Sama_3366	0.11	-1.0
3,991,786	-		Sama_3366	0.11	+0.2
3,991,787	+		Sama_3366	0.11	-1.5
3,991,787	+		Sama_3366	0.11	-1.4
3,991,787	+		Sama_3366	0.11	-0.6
3,991,788	-		Sama_3366	0.11	-1.0
3,991,788	-		Sama_3366	0.11	-1.0
3,991,788	-		Sama_3366	0.11	-0.7
3,991,788	-		Sama_3366	0.11	-1.0
3,991,788	-		Sama_3366	0.11	-0.1
3,991,788	-		Sama_3366	0.11	-0.3
3,991,788	-		Sama_3366	0.11	-2.2
3,991,788	-		Sama_3366	0.11	-0.3
3,991,788	-		Sama_3366	0.11	-1.4
3,991,788	-		Sama_3366	0.11	-0.5
3,991,821	+		Sama_3366	0.14	-1.3
3,991,821	+		Sama_3366	0.14	-0.4
3,991,821	+		Sama_3366	0.14	-2.2
3,991,821	+		Sama_3366	0.14	-1.1
3,991,821	+		Sama_3366	0.14	-2.5
3,991,821	+		Sama_3366	0.14	-1.3
3,991,821	+		Sama_3366	0.14	-1.5
3,991,822	-		Sama_3366	0.14	-0.8
3,991,831	+		Sama_3366	0.14	-1.1
3,991,831	+		Sama_3366	0.14	-0.7
3,991,832	-		Sama_3366	0.14	-1.5
3,991,832	-		Sama_3366	0.14	+0.2
3,991,873	+		Sama_3366	0.17	-0.7
3,991,873	+		Sama_3366	0.17	-3.6
3,991,873	+		Sama_3366	0.17	-1.4
3,991,874	-		Sama_3366	0.17	-1.5
3,991,874	-		Sama_3366	0.17	-1.3
3,991,878	+		Sama_3366	0.17	-0.4
3,991,878	+		Sama_3366	0.17	-2.9
3,991,879	-		Sama_3366	0.17	-1.7
3,991,879	-		Sama_3366	0.17	-0.9
3,991,879	-		Sama_3366	0.17	+0.2
3,991,879	-		Sama_3366	0.17	+0.3
3,991,960	+		Sama_3366	0.23	-2.1
3,991,960	+		Sama_3366	0.23	-1.4
3,991,960	+		Sama_3366	0.23	-1.2
3,991,961	-		Sama_3366	0.23	+0.2
3,991,961	-		Sama_3366	0.23	-0.4
3,991,961	-		Sama_3366	0.23	+0.5
3,991,961	-		Sama_3366	0.23	+0.8
3,991,961	-		Sama_3366	0.23	-2.7
3,991,995	+		Sama_3366	0.25	-1.5
3,991,995	+		Sama_3366	0.25	-1.2
3,991,995	+		Sama_3366	0.25	-0.2
3,992,011	-		Sama_3366	0.26	-0.3
3,992,077	+		Sama_3366	0.30	-2.5
3,992,078	-		Sama_3366	0.30	-0.3
3,992,078	-		Sama_3366	0.30	-1.1
3,992,078	-		Sama_3366	0.30	-1.0
3,992,101	+		Sama_3366	0.32	-1.4
3,992,101	+		Sama_3366	0.32	-1.1
3,992,102	-		Sama_3366	0.32	-0.7
3,992,118	+		Sama_3366	0.33	-1.1
3,992,118	+		Sama_3366	0.33	-1.9
3,992,118	+		Sama_3366	0.33	-0.3
3,992,146	-		Sama_3366	0.35	-0.4
3,992,294	+		Sama_3366	0.44	+0.2
3,992,330	-		Sama_3366	0.47	-2.4
3,992,345	+		Sama_3366	0.48	-0.4
3,992,346	-		Sama_3366	0.48	-1.1
3,992,346	-		Sama_3366	0.48	+0.9
3,992,346	-		Sama_3366	0.48	-1.8
3,992,396	+		Sama_3366	0.51	-2.0
3,992,397	-		Sama_3366	0.51	-1.2
3,992,397	-		Sama_3366	0.51	+0.1
3,992,397	-		Sama_3366	0.51	-1.5
3,992,446	-		Sama_3366	0.54	-1.1
3,992,446	-		Sama_3366	0.54	-0.8
3,992,446	-		Sama_3366	0.54	-0.7
3,992,557	+		Sama_3366	0.61	-1.2
3,992,557	+		Sama_3366	0.61	-2.4
3,992,557	+		Sama_3366	0.61	-1.5
3,992,557	+		Sama_3366	0.61	+0.3
3,992,558	-		Sama_3366	0.61	-1.0
3,992,558	-		Sama_3366	0.61	-3.3
3,992,558	-		Sama_3366	0.61	-0.7
3,992,558	-		Sama_3366	0.61	-0.2
3,992,558	-		Sama_3366	0.61	-1.4