Strain Fitness in Shewanella amazonensis SB2B around Sama_3090

Experiment: Lomefloxacin 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
3,664,313	+		Sama_3088	0.54	-0.2
3,664,314	-		Sama_3088	0.54	-1.6
3,664,314	-		Sama_3088	0.54	-0.4
3,664,314	-		Sama_3088	0.54	-0.4
3,664,368	+		Sama_3088	0.58	+0.0
3,664,368	+		Sama_3088	0.58	-1.2
3,664,368	+		Sama_3088	0.58	-0.4
3,664,368	+		Sama_3088	0.58	-1.4
3,664,369	-		Sama_3088	0.58	-1.6
3,664,369	-		Sama_3088	0.58	-1.7
3,664,369	-		Sama_3088	0.58	+0.3
3,664,369	-		Sama_3088	0.58	+0.8
3,664,369	-		Sama_3088	0.58	-1.0
3,664,369	-		Sama_3088	0.58	-0.4
3,664,369	-		Sama_3088	0.58	-0.7
3,664,373	+		Sama_3088	0.58	-1.7
3,664,374	-		Sama_3088	0.59	-1.0
3,664,417	+		Sama_3088	0.61	-1.2
3,664,418	-		Sama_3088	0.61	-2.2
3,664,418	-		Sama_3088	0.61	-1.0
3,664,424	+		Sama_3088	0.62	+0.0
3,664,436	+		Sama_3088	0.63	-1.6
3,664,436	+		Sama_3088	0.63	+0.0
3,664,437	-		Sama_3088	0.63	-2.4
3,664,437	-		Sama_3088	0.63	-0.4
3,664,437	-		Sama_3088	0.63	-1.6
3,664,442	+		Sama_3088	0.63	-1.0
3,664,443	-		Sama_3088	0.63	-1.6
3,664,465	-		Sama_3088	0.65	-1.2
3,664,465	-		Sama_3088	0.65	-0.7
3,664,465	-		Sama_3088	0.65	-1.7
3,664,465	-		Sama_3088	0.65	-1.7
3,664,545	-		Sama_3088	0.70	-1.1
3,664,597	+		Sama_3088	0.74	+0.6
3,664,597	+		Sama_3088	0.74	-1.2
3,664,598	-		Sama_3088	0.74	-1.2
3,664,680	-		Sama_3088	0.79	-0.6
3,664,722	+		Sama_3088	0.82	+1.2
3,664,722	+		Sama_3088	0.82	-0.2
3,664,722	+		Sama_3088	0.82	-1.2
3,664,723	-		Sama_3088	0.82	-0.7
3,664,730	+		Sama_3088	0.83	-1.2
3,664,730	+		Sama_3088	0.83	-1.0
3,664,742	+		Sama_3088	0.83	-0.7
3,664,742	+		Sama_3088	0.83	-2.0
3,664,808	+		Sama_3088	0.88	-1.9
3,664,808	+		Sama_3088	0.88	+1.6
3,664,808	+		Sama_3088	0.88	-1.0
3,664,808	+		Sama_3088	0.88	-0.7
3,664,809	-		Sama_3088	0.88	-1.2
3,664,809	-		Sama_3088	0.88	-1.0
3,664,827	-		Sama_3088	0.89	-1.5
3,664,827	-		Sama_3088	0.89	-0.4
3,664,919	+				-1.7
3,664,920	-				-1.4
3,664,938	+				-1.0
3,664,938	+				-0.4
3,664,939	-				-1.4
3,664,939	-				+0.0
3,664,976	+				-0.9
3,664,976	+				-0.1
3,664,976	+				-1.2
3,664,976	+				-1.0
3,664,977	-				-0.7
3,664,977	-				-0.7
3,664,977	-				-2.0
3,664,977	-				+1.1
3,664,984	+				-0.4
3,664,985	-				-1.5
3,664,985	-				-1.0
3,664,986	+				-0.4
3,664,987	-				-1.9
3,664,987	-				-0.1
3,665,019	-				-1.3
3,665,045	+				+0.0
3,665,069	+		Sama_3089	0.17	-0.6
3,665,070	-		Sama_3089	0.18	+1.6
3,665,070	-		Sama_3089	0.18	+0.8
3,665,070	-		Sama_3089	0.18	+1.0
3,665,073	+		Sama_3089	0.19	-1.2
3,665,073	+		Sama_3089	0.19	+0.3
3,665,073	+		Sama_3089	0.19	-2.0
3,665,073	+		Sama_3089	0.19	-1.1
3,665,073	+		Sama_3089	0.19	-0.0
3,665,073	+		Sama_3089	0.19	-0.6
3,665,073	+		Sama_3089	0.19	-2.4
3,665,073	+		Sama_3089	0.19	+0.3
3,665,074	-		Sama_3089	0.19	+0.6
3,665,074	-		Sama_3089	0.19	+0.5
3,665,074	-		Sama_3089	0.19	+0.4
3,665,074	-		Sama_3089	0.19	-2.5
3,665,074	-		Sama_3089	0.19	+0.7
3,665,077	+		Sama_3089	0.20	-0.4
3,665,077	+		Sama_3089	0.20	+0.4
3,665,077	+		Sama_3089	0.20	-1.6
3,665,077	+		Sama_3089	0.20	-0.6
3,665,077	+		Sama_3089	0.20	-1.2
3,665,078	-		Sama_3089	0.20	+0.6
3,665,078	-		Sama_3089	0.20	-2.9
3,665,123	+		Sama_3089	0.36	-0.1
3,665,123	+		Sama_3089	0.36	-0.7
3,665,123	+		Sama_3089	0.36	-1.0
3,665,124	-		Sama_3089	0.36	+0.0
3,665,200	+		Sama_3089	0.63	-1.3
3,665,201	-		Sama_3089	0.63	-1.4
3,665,229	+		Sama_3089	0.73	+1.4
3,665,229	+		Sama_3089	0.73	+1.2
3,665,229	+		Sama_3089	0.73	-1.1
3,665,229	+		Sama_3089	0.73	-0.3
3,665,229	+		Sama_3089	0.73	-1.1
3,665,229	+		Sama_3089	0.73	-0.6
3,665,229	+		Sama_3089	0.73	-0.7
3,665,229	+		Sama_3089	0.73	+1.6
3,665,229	+		Sama_3089	0.73	-0.4
3,665,230	-		Sama_3089	0.73	-1.0
3,665,230	-		Sama_3089	0.73	-1.0
3,665,230	-		Sama_3089	0.73	-1.6
3,665,256	-		Sama_3089	0.82	-1.2
3,665,273	+		Sama_3089	0.88	-0.2
3,665,316	+				-1.2
3,665,316	+				-1.4
3,665,317	-				-2.6
3,665,317	-				+0.0
3,665,320	+				-0.4
3,665,320	+				+0.0
3,665,320	+				-1.9
3,665,344	+				-1.0
3,665,345	-				-1.9
3,665,390	-		Sama_3090	0.18	+0.6
3,665,479	+		Sama_3090	0.38	-0.7
3,665,480	-		Sama_3090	0.39	-2.7
3,665,485	+		Sama_3090	0.40	-1.2
3,665,485	+		Sama_3090	0.40	-1.0
3,665,485	+		Sama_3090	0.40	+0.0
3,665,491	+		Sama_3090	0.41	-2.1
3,665,523	+		Sama_3090	0.48	-1.6
3,665,523	+		Sama_3090	0.48	+0.6
3,665,523	+		Sama_3090	0.48	-1.0
3,665,523	+		Sama_3090	0.48	-1.6
3,665,523	+		Sama_3090	0.48	-3.4
3,665,523	+		Sama_3090	0.48	+0.0
3,665,523	+		Sama_3090	0.48	-2.0
3,665,523	+		Sama_3090	0.48	+0.0
3,665,523	+		Sama_3090	0.48	-0.4
3,665,524	-		Sama_3090	0.48	-1.0
3,665,524	-		Sama_3090	0.48	-1.2
3,665,524	-		Sama_3090	0.48	-0.4
3,665,524	-		Sama_3090	0.48	-1.6
3,665,524	-		Sama_3090	0.48	-0.7
3,665,524	-		Sama_3090	0.48	-1.9
3,665,527	+		Sama_3090	0.49	-2.3
3,665,527	+		Sama_3090	0.49	-1.2
3,665,527	+		Sama_3090	0.49	-0.7
3,665,528	-		Sama_3090	0.49	-0.9
3,665,535	+		Sama_3090	0.51	-2.2
3,665,536	-		Sama_3090	0.51	-1.0
3,665,571	-		Sama_3090	0.59	-1.0
3,665,733	-				-1.2
3,665,739	+				+0.3
3,665,739	+				-2.3
3,665,760	+				+0.3
3,665,763	-				+1.6
3,665,807	+				+0.5
3,665,824	+				+0.1
3,665,827	+				-0.4
3,665,827	+				-0.7
3,665,827	+				-1.9
3,665,828	-				-0.7
3,665,828	-				-0.8
3,665,828	-				-2.8
3,665,880	+		Sama_3091	0.15	-0.9
3,665,881	-		Sama_3091	0.15	-1.0
3,665,886	+		Sama_3091	0.16	+0.0
3,665,887	-		Sama_3091	0.16	+0.0
3,665,890	-		Sama_3091	0.17	-1.0
3,666,035	-		Sama_3091	0.34	+0.6
3,666,093	+		Sama_3091	0.40	-0.7
3,666,093	+		Sama_3091	0.40	-0.1
3,666,094	-		Sama_3091	0.40	+0.2
3,666,094	-		Sama_3091	0.40	-0.7
3,666,132	+		Sama_3091	0.45	-0.1
3,666,133	-		Sama_3091	0.45	-2.3
3,666,133	-		Sama_3091	0.45	-0.1
3,666,133	-		Sama_3091	0.45	-3.2
3,666,154	-		Sama_3091	0.48	+0.5
3,666,154	-		Sama_3091	0.48	-0.4
3,666,172	+		Sama_3091	0.50	-0.6
3,666,172	+		Sama_3091	0.50	-0.5
3,666,172	+		Sama_3091	0.50	-1.7
3,666,172	+		Sama_3091	0.50	-1.1
3,666,173	-		Sama_3091	0.50	-2.1
3,666,200	+		Sama_3091	0.53	-1.6
3,666,200	+		Sama_3091	0.53	-1.9
3,666,200	+		Sama_3091	0.53	+0.3
3,666,200	+		Sama_3091	0.53	-1.0
3,666,200	+		Sama_3091	0.53	-1.0
3,666,200	+		Sama_3091	0.53	-0.1
3,666,201	-		Sama_3091	0.53	-1.5
3,666,201	-		Sama_3091	0.53	+1.2
3,666,203	+		Sama_3091	0.53	-0.7
3,666,203	+		Sama_3091	0.53	+0.2
3,666,203	+		Sama_3091	0.53	+1.2
3,666,203	+		Sama_3091	0.53	-0.1
3,666,203	+		Sama_3091	0.53	-2.3
3,666,204	-		Sama_3091	0.53	-2.2
3,666,204	-		Sama_3091	0.53	-1.0
3,666,204	-		Sama_3091	0.53	-2.2
3,666,204	-		Sama_3091	0.53	-1.9
3,666,204	-		Sama_3091	0.53	-1.3
3,666,204	-		Sama_3091	0.53	-0.9
3,666,204	-		Sama_3091	0.53	-1.4
3,666,204	-		Sama_3091	0.53	-0.7
3,666,204	-		Sama_3091	0.53	-1.1
3,666,363	+		Sama_3091	0.72	-1.0
3,666,400	+		Sama_3091	0.76	-1.4
3,666,400	+		Sama_3091	0.76	-1.4
3,666,400	+		Sama_3091	0.76	-0.4
3,666,400	+		Sama_3091	0.76	-0.7
3,666,400	+		Sama_3091	0.76	-0.6
3,666,400	+		Sama_3091	0.76	-0.4
3,666,400	+		Sama_3091	0.76	-3.8
3,666,401	-		Sama_3091	0.77	+0.3
3,666,401	-		Sama_3091	0.77	-0.1
3,666,401	-		Sama_3091	0.77	-1.7
3,666,401	-		Sama_3091	0.77	-0.4
3,666,401	-		Sama_3091	0.77	+0.0
3,666,453	+		Sama_3091	0.83	-0.3
3,666,453	+		Sama_3091	0.83	-1.2
3,666,453	+		Sama_3091	0.83	+0.8
3,666,454	-		Sama_3091	0.83	-1.0
3,666,454	-		Sama_3091	0.83	-1.6
3,666,466	+		Sama_3091	0.84	+1.1
3,666,466	+		Sama_3091	0.84	-1.0
3,666,466	+		Sama_3091	0.84	+0.4
3,666,466	+		Sama_3091	0.84	+0.6
3,666,467	-		Sama_3091	0.84	-0.6
3,666,467	-		Sama_3091	0.84	-0.1
3,666,467	-		Sama_3091	0.84	-1.8
3,666,514	+		Sama_3091	0.90	+0.0
3,666,514	+		Sama_3091	0.90	+0.3
3,666,515	-				-1.2
3,666,515	-				-1.7
3,666,515	-				+1.6
3,666,515	-				-4.1
3,666,615	+		Sama_3092	0.10	-3.1
3,666,615	+		Sama_3092	0.10	-1.5
3,666,616	-		Sama_3092	0.11	+0.6
3,666,622	+		Sama_3092	0.13	-0.5
3,666,623	-		Sama_3092	0.13	-1.8