Strain Fitness in Shewanella amazonensis SB2B around Sama_2546

Experiment: Lomefloxacin 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
3,054,411	-				-2.7
3,054,411	-				-0.5
3,054,434	-		Sama_2544	0.13	-1.2
3,054,443	-		Sama_2544	0.14	-0.9
3,054,476	+		Sama_2544	0.21	-0.9
3,054,477	-		Sama_2544	0.21	-1.0
3,054,539	+		Sama_2544	0.33	-1.7
3,054,551	+		Sama_2544	0.36	-0.8
3,054,552	-		Sama_2544	0.36	-1.0
3,054,560	-		Sama_2544	0.37	+0.4
3,054,560	-		Sama_2544	0.37	+0.5
3,054,560	-		Sama_2544	0.37	-0.8
3,054,560	-		Sama_2544	0.37	-0.5
3,054,607	+		Sama_2544	0.47	-0.9
3,054,608	-		Sama_2544	0.47	-1.4
3,054,641	+		Sama_2544	0.53	-0.7
3,054,699	+		Sama_2544	0.65	-1.2
3,054,699	+		Sama_2544	0.65	-1.3
3,054,765	-		Sama_2544	0.78	-2.0
3,054,776	-		Sama_2544	0.80	-2.6
3,054,810	+		Sama_2544	0.87	+0.1
3,054,810	+		Sama_2544	0.87	-0.1
3,054,844	+				-1.5
3,054,877	-				+1.3
3,054,880	+				-1.6
3,054,880	+				-2.8
3,054,880	+				-0.3
3,054,880	+				-1.5
3,054,881	-				+0.7
3,054,881	-				-0.3
3,054,881	-				+0.9
3,054,881	-				-0.4
3,054,881	-				+1.1
3,054,887	+				-1.7
3,054,887	+				-2.4
3,054,888	-				-1.5
3,054,888	-				+0.4
3,054,888	-				+0.9
3,054,891	+				+0.5
3,054,892	-				-1.1
3,054,899	+				-1.5
3,055,006	+				+0.3
3,055,006	+				-0.4
3,055,006	+				+0.9
3,055,006	+				-0.1
3,055,006	+				+0.1
3,055,007	-				-1.0
3,055,007	-				+0.9
3,055,007	-				+0.2
3,055,023	+				-0.7
3,055,023	+				-0.5
3,055,023	+				-0.8
3,055,023	+				+1.3
3,055,065	+		Sama_2545	0.13	+0.5
3,055,087	-		Sama_2545	0.20	-0.3
3,055,087	-		Sama_2545	0.20	+2.5
3,055,087	-		Sama_2545	0.20	-0.4
3,055,088	+		Sama_2545	0.20	+0.2
3,055,088	+		Sama_2545	0.20	-0.1
3,055,089	-		Sama_2545	0.21	-0.8
3,055,089	-		Sama_2545	0.21	-0.1
3,055,089	-		Sama_2545	0.21	-1.4
3,055,089	-		Sama_2545	0.21	+0.3
3,055,092	+		Sama_2545	0.22	-0.9
3,055,092	+		Sama_2545	0.22	-0.4
3,055,092	+		Sama_2545	0.22	+0.2
3,055,092	+		Sama_2545	0.22	+0.4
3,055,093	-		Sama_2545	0.22	+1.2
3,055,247	+		Sama_2545	0.73	-1.9
3,055,247	+		Sama_2545	0.73	-1.5
3,055,247	+		Sama_2545	0.73	+0.1
3,055,247	+		Sama_2545	0.73	+0.2
3,055,247	+		Sama_2545	0.73	-1.1
3,055,248	-		Sama_2545	0.74	-0.4
3,055,248	-		Sama_2545	0.74	-0.7
3,055,248	-		Sama_2545	0.74	-2.1
3,055,248	-		Sama_2545	0.74	+2.1
3,055,248	-		Sama_2545	0.74	-0.3
3,055,308	+				-2.4
3,055,308	+				+0.2
3,055,312	-				-0.3
3,055,326	+				-0.7
3,055,326	+				-1.2
3,055,326	+				+0.4
3,055,326	+				+0.1
3,055,326	+				-0.3
3,055,326	+				-0.7
3,055,327	-				-1.6
3,055,327	-				+0.7
3,055,327	-				+0.6
3,055,327	-				-0.1
3,055,327	-				-0.6
3,055,327	-				-0.7
3,055,327	-				-0.3
3,055,472	-		Sama_2546	0.17	-1.9
3,055,499	+		Sama_2546	0.22	-0.6
3,055,499	+		Sama_2546	0.22	-0.8
3,055,499	+		Sama_2546	0.22	+0.4
3,055,499	+		Sama_2546	0.22	+0.2
3,055,500	-		Sama_2546	0.22	-2.5
3,055,500	-		Sama_2546	0.22	+0.7
3,055,500	-		Sama_2546	0.22	+0.2
3,055,500	-		Sama_2546	0.22	+0.9
3,055,500	-		Sama_2546	0.22	-0.7
3,055,594	+		Sama_2546	0.40	-0.7
3,055,595	-		Sama_2546	0.40	-1.1
3,055,646	+		Sama_2546	0.50	-0.3
3,055,646	+		Sama_2546	0.50	-1.7
3,055,647	-		Sama_2546	0.50	-2.1
3,055,647	-		Sama_2546	0.50	+0.9
3,055,647	-		Sama_2546	0.50	+0.5
3,055,647	-		Sama_2546	0.50	-1.4
3,055,686	+		Sama_2546	0.58	-0.1
3,055,687	-		Sama_2546	0.58	-1.4
3,055,687	-		Sama_2546	0.58	-0.7
3,055,687	-		Sama_2546	0.58	+0.5
3,055,687	-		Sama_2546	0.58	+0.9
3,055,687	-		Sama_2546	0.58	-1.3
3,055,804	+		Sama_2546	0.80	-0.4
3,055,805	-		Sama_2546	0.80	-0.5
3,055,924	-				-0.5
3,055,950	+				+1.2
3,055,950	+				-0.3
3,055,951	-				-2.8
3,055,979	+				-1.8
3,055,979	+				-0.9
3,055,980	-				-0.3
3,055,980	-				+1.5
3,056,049	-				-0.3
3,056,106	-		Sama_2547	0.15	-1.4
3,056,106	-		Sama_2547	0.15	-0.7
3,056,149	-		Sama_2547	0.22	+0.5
3,056,279	+		Sama_2547	0.43	+0.3
3,056,279	+		Sama_2547	0.43	+0.3
3,056,279	+		Sama_2547	0.43	-1.6
3,056,280	-		Sama_2547	0.43	-2.0
3,056,280	-		Sama_2547	0.43	-0.7
3,056,280	-		Sama_2547	0.43	-0.1
3,056,280	-		Sama_2547	0.43	-0.4
3,056,303	+		Sama_2547	0.47	-1.1
3,056,304	-		Sama_2547	0.47	+0.2
3,056,319	-		Sama_2547	0.50	-0.3
3,056,319	-		Sama_2547	0.50	-1.9
3,056,354	+		Sama_2547	0.55	+1.9
3,056,354	+		Sama_2547	0.55	-0.7
3,056,365	-		Sama_2547	0.57	-1.7
3,056,368	+		Sama_2547	0.58	-1.6
3,056,368	+		Sama_2547	0.58	-1.2
3,056,368	+		Sama_2547	0.58	-1.4
3,056,368	+		Sama_2547	0.58	-0.3
3,056,369	-		Sama_2547	0.58	-0.9
3,056,369	-		Sama_2547	0.58	-0.8
3,056,369	-		Sama_2547	0.58	-2.7
3,056,395	+		Sama_2547	0.62	+0.9
3,056,398	-		Sama_2547	0.62	-1.2
3,056,413	+		Sama_2547	0.65	-0.4
3,056,473	+		Sama_2547	0.75	-1.8
3,056,474	-		Sama_2547	0.75	-1.1
3,056,480	+		Sama_2547	0.76	-0.3
3,056,560	-		Sama_2547	0.89	-0.9
3,056,560	-		Sama_2547	0.89	-0.4
3,056,560	-		Sama_2547	0.89	-0.7
3,056,640	+				-1.7
3,056,640	+				+0.3
3,056,640	+				-0.8
3,056,640	+				-1.9
3,056,640	+				-0.8
3,056,640	+				+0.5
3,056,641	-				+0.2
3,056,641	-				+0.1
3,056,641	-				-0.5
3,056,641	-				-0.4
3,056,641	-				-1.3
3,056,651	+				-1.1
3,056,711	+				-0.3
3,056,711	+				-0.3
3,056,721	+				+1.5
3,056,721	+				+2.5
3,056,721	+				-1.2
3,056,721	+				+0.1
3,056,721	+				-0.5
3,056,721	+				+0.9
3,056,722	-				+0.2