Strain Fitness in Shewanella amazonensis SB2B around Sama_1616

Experiment: Lomefloxacin 0.000390625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1615 and Sama_1616 overlap by 4 nucleotidesSama_1616 and Sama_1617 are separated by 193 nucleotides Sama_1615: Sama_1615 - hypothetical protein (RefSeq), at 1,973,505 to 1,977,398 _1615 Sama_1616: Sama_1616 - hypothetical protein (RefSeq), at 1,977,395 to 1,979,233 _1616 Sama_1617: Sama_1617 - asparaginase family protein (RefSeq), at 1,979,427 to 1,980,410 _1617 Position (kb) 1977 1978 1979 1980Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1976.429 kb on + strand, within Sama_1615at 1976.429 kb on + strand, within Sama_1615at 1976.430 kb on - strand, within Sama_1615at 1976.430 kb on - strand, within Sama_1615at 1976.465 kb on + strand, within Sama_1615at 1976.505 kb on - strand, within Sama_1615at 1976.520 kb on - strand, within Sama_1615at 1976.520 kb on - strand, within Sama_1615at 1976.562 kb on + strand, within Sama_1615at 1976.562 kb on + strand, within Sama_1615at 1976.563 kb on - strand, within Sama_1615at 1976.724 kb on - strand, within Sama_1615at 1976.776 kb on - strand, within Sama_1615at 1976.776 kb on - strand, within Sama_1615at 1976.791 kb on - strand, within Sama_1615at 1976.791 kb on - strand, within Sama_1615at 1976.875 kb on - strand, within Sama_1615at 1976.889 kb on + strand, within Sama_1615at 1976.890 kb on - strand, within Sama_1615at 1976.890 kb on - strand, within Sama_1615at 1976.912 kb on + strand, within Sama_1615at 1976.912 kb on + strand, within Sama_1615at 1976.912 kb on + strand, within Sama_1615at 1976.912 kb on + strand, within Sama_1615at 1976.913 kb on - strand, within Sama_1615at 1976.913 kb on - strand, within Sama_1615at 1976.985 kb on + strand, within Sama_1615at 1976.986 kb on - strand, within Sama_1615at 1976.986 kb on - strand, within Sama_1615at 1976.986 kb on - strand, within Sama_1615at 1977.111 kb on + strandat 1977.111 kb on + strandat 1977.111 kb on + strandat 1977.111 kb on + strandat 1977.111 kb on + strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.112 kb on - strandat 1977.113 kb on + strandat 1977.114 kb on - strandat 1977.114 kb on - strandat 1977.114 kb on - strandat 1977.140 kb on + strandat 1977.154 kb on + strandat 1977.154 kb on + strandat 1977.154 kb on + strandat 1977.155 kb on - strandat 1977.155 kb on - strandat 1977.155 kb on - strandat 1977.266 kb on - strandat 1977.266 kb on - strandat 1977.266 kb on - strandat 1977.266 kb on - strandat 1977.266 kb on - strandat 1977.387 kb on - strandat 1977.399 kb on - strandat 1977.399 kb on - strandat 1977.422 kb on + strandat 1977.422 kb on + strandat 1977.422 kb on + strandat 1977.422 kb on + strandat 1977.422 kb on + strandat 1977.422 kb on + strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.423 kb on - strandat 1977.425 kb on - strandat 1977.425 kb on - strandat 1977.445 kb on + strandat 1977.446 kb on - strandat 1977.446 kb on + strandat 1977.465 kb on - strandat 1977.465 kb on - strandat 1977.491 kb on + strandat 1977.510 kb on - strandat 1977.528 kb on - strandat 1977.551 kb on - strandat 1977.607 kb on - strand, within Sama_1616at 1977.607 kb on - strand, within Sama_1616at 1977.607 kb on - strand, within Sama_1616at 1977.609 kb on + strand, within Sama_1616at 1977.610 kb on - strand, within Sama_1616at 1977.610 kb on - strand, within Sama_1616at 1977.616 kb on - strand, within Sama_1616at 1977.650 kb on + strand, within Sama_1616at 1977.650 kb on + strand, within Sama_1616at 1977.650 kb on + strand, within Sama_1616at 1977.651 kb on - strand, within Sama_1616at 1977.651 kb on - strand, within Sama_1616at 1977.651 kb on - strand, within Sama_1616at 1977.651 kb on - strand, within Sama_1616at 1977.694 kb on + strand, within Sama_1616at 1977.696 kb on + strand, within Sama_1616at 1977.696 kb on + strand, within Sama_1616at 1977.697 kb on - strand, within Sama_1616at 1977.697 kb on - strand, within Sama_1616at 1977.697 kb on - strand, within Sama_1616at 1977.730 kb on + strand, within Sama_1616at 1977.731 kb on - strand, within Sama_1616at 1977.841 kb on + strand, within Sama_1616at 1977.884 kb on + strand, within Sama_1616at 1977.884 kb on + strand, within Sama_1616at 1977.885 kb on - strand, within Sama_1616at 1977.919 kb on - strand, within Sama_1616at 1977.931 kb on - strand, within Sama_1616at 1977.994 kb on + strand, within Sama_1616at 1977.995 kb on - strand, within Sama_1616at 1978.024 kb on - strand, within Sama_1616at 1978.024 kb on - strand, within Sama_1616at 1978.024 kb on - strand, within Sama_1616at 1978.044 kb on + strand, within Sama_1616at 1978.179 kb on + strand, within Sama_1616at 1978.179 kb on + strand, within Sama_1616at 1978.179 kb on + strand, within Sama_1616at 1978.179 kb on + strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.180 kb on - strand, within Sama_1616at 1978.181 kb on + strand, within Sama_1616at 1978.181 kb on + strand, within Sama_1616at 1978.181 kb on + strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.182 kb on - strand, within Sama_1616at 1978.197 kb on + strand, within Sama_1616at 1978.197 kb on + strand, within Sama_1616at 1978.201 kb on + strand, within Sama_1616at 1978.201 kb on + strand, within Sama_1616at 1978.264 kb on + strand, within Sama_1616at 1978.265 kb on - strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.266 kb on + strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.267 kb on - strand, within Sama_1616at 1978.306 kb on + strand, within Sama_1616at 1978.336 kb on + strand, within Sama_1616at 1978.381 kb on + strand, within Sama_1616at 1978.382 kb on - strand, within Sama_1616at 1978.382 kb on - strand, within Sama_1616at 1978.400 kb on + strand, within Sama_1616at 1978.400 kb on + strand, within Sama_1616at 1978.401 kb on - strand, within Sama_1616at 1978.401 kb on - strand, within Sama_1616at 1978.402 kb on + strand, within Sama_1616at 1978.403 kb on - strand, within Sama_1616at 1978.503 kb on - strand, within Sama_1616at 1978.503 kb on - strand, within Sama_1616at 1978.522 kb on - strand, within Sama_1616at 1978.572 kb on + strand, within Sama_1616at 1978.572 kb on + strand, within Sama_1616at 1978.572 kb on + strand, within Sama_1616at 1978.604 kb on - strand, within Sama_1616at 1978.738 kb on - strand, within Sama_1616at 1978.753 kb on - strand, within Sama_1616at 1978.790 kb on - strand, within Sama_1616at 1978.800 kb on + strand, within Sama_1616at 1978.963 kb on + strand, within Sama_1616at 1978.964 kb on - strand, within Sama_1616at 1979.002 kb on - strand, within Sama_1616at 1979.002 kb on - strand, within Sama_1616at 1979.004 kb on + strand, within Sama_1616at 1979.004 kb on + strand, within Sama_1616at 1979.047 kb on + strand, within Sama_1616at 1979.047 kb on + strand, within Sama_1616at 1979.048 kb on - strand, within Sama_1616at 1979.048 kb on - strand, within Sama_1616at 1979.048 kb on - strand, within Sama_1616at 1979.069 kb on + strandat 1979.069 kb on + strandat 1979.070 kb on - strandat 1979.130 kb on - strandat 1979.145 kb on - strandat 1979.145 kb on - strandat 1979.153 kb on + strandat 1979.154 kb on - strandat 1979.154 kb on - strandat 1979.262 kb on + strandat 1979.289 kb on - strandat 1979.363 kb on - strandat 1979.373 kb on - strandat 1979.385 kb on + strandat 1979.385 kb on + strandat 1979.385 kb on + strandat 1979.615 kb on + strand, within Sama_1617at 1979.616 kb on - strand, within Sama_1617at 1979.621 kb on + strand, within Sama_1617at 1979.621 kb on + strand, within Sama_1617at 1979.622 kb on - strand, within Sama_1617at 1979.646 kb on - strand, within Sama_1617at 1979.668 kb on - strand, within Sama_1617at 1979.668 kb on - strand, within Sama_1617at 1979.747 kb on + strand, within Sama_1617at 1979.747 kb on + strand, within Sama_1617at 1979.748 kb on - strand, within Sama_1617at 1979.748 kb on - strand, within Sama_1617at 1979.793 kb on - strand, within Sama_1617at 1979.989 kb on - strand, within Sama_1617at 1979.989 kb on - strand, within Sama_1617at 1980.086 kb on + strand, within Sama_1617at 1980.086 kb on + strand, within Sama_1617at 1980.120 kb on + strand, within Sama_1617at 1980.120 kb on + strand, within Sama_1617at 1980.168 kb on + strand, within Sama_1617at 1980.169 kb on - strand, within Sama_1617at 1980.169 kb on - strand, within Sama_1617at 1980.181 kb on - strand, within Sama_1617at 1980.216 kb on + strand, within Sama_1617at 1980.216 kb on + strand, within Sama_1617at 1980.216 kb on + strand, within Sama_1617at 1980.217 kb on - strand, within Sama_1617

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Per-strain Table

Position Strand Gene LocusTag Fraction Lomefloxacin 0.000390625 mM
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1,976,429 + Sama_1615 0.75 -0.5
1,976,429 + Sama_1615 0.75 -1.9
1,976,430 - Sama_1615 0.75 -0.3
1,976,430 - Sama_1615 0.75 -1.6
1,976,465 + Sama_1615 0.76 +1.6
1,976,505 - Sama_1615 0.77 -2.0
1,976,520 - Sama_1615 0.77 +0.3
1,976,520 - Sama_1615 0.77 +0.1
1,976,562 + Sama_1615 0.79 -0.9
1,976,562 + Sama_1615 0.79 -0.9
1,976,563 - Sama_1615 0.79 -1.4
1,976,724 - Sama_1615 0.83 -2.1
1,976,776 - Sama_1615 0.84 -1.3
1,976,776 - Sama_1615 0.84 -1.1
1,976,791 - Sama_1615 0.84 -1.8
1,976,791 - Sama_1615 0.84 +0.6
1,976,875 - Sama_1615 0.87 +1.2
1,976,889 + Sama_1615 0.87 +0.1
1,976,890 - Sama_1615 0.87 -0.8
1,976,890 - Sama_1615 0.87 +0.6
1,976,912 + Sama_1615 0.87 -0.4
1,976,912 + Sama_1615 0.87 -0.5
1,976,912 + Sama_1615 0.87 +0.1
1,976,912 + Sama_1615 0.87 +2.1
1,976,913 - Sama_1615 0.88 -0.7
1,976,913 - Sama_1615 0.88 -0.3
1,976,985 + Sama_1615 0.89 -1.3
1,976,986 - Sama_1615 0.89 -1.1
1,976,986 - Sama_1615 0.89 -0.9
1,976,986 - Sama_1615 0.89 -0.4
1,977,111 + -0.5
1,977,111 + -0.7
1,977,111 + -0.7
1,977,111 + -2.6
1,977,111 + -2.0
1,977,112 - -0.4
1,977,112 - -1.7
1,977,112 - -0.8
1,977,112 - -3.4
1,977,112 - -0.4
1,977,112 - -1.9
1,977,112 - -0.5
1,977,113 + +0.8
1,977,114 - +0.6
1,977,114 - -1.7
1,977,114 - -1.5
1,977,140 + +1.3
1,977,154 + -1.3
1,977,154 + -1.2
1,977,154 + -2.0
1,977,155 - -1.3
1,977,155 - -0.4
1,977,155 - +0.1
1,977,266 - +0.3
1,977,266 - -0.5
1,977,266 - +0.1
1,977,266 - -1.2
1,977,266 - -1.2
1,977,387 - +0.1
1,977,399 - -0.2
1,977,399 - +0.3
1,977,422 + -0.2
1,977,422 + -0.6
1,977,422 + -1.1
1,977,422 + +0.6
1,977,422 + -0.5
1,977,422 + -0.1
1,977,423 - -0.7
1,977,423 - +0.1
1,977,423 - -3.2
1,977,423 - +0.1
1,977,423 - +0.6
1,977,423 - +0.6
1,977,423 - +0.3
1,977,425 - +1.3
1,977,425 - +0.5
1,977,445 + -0.9
1,977,446 - -0.9
1,977,446 + +0.6
1,977,465 - -1.1
1,977,465 - -0.2
1,977,491 + -0.5
1,977,510 - -1.5
1,977,528 - +0.1
1,977,551 - -0.8
1,977,607 - Sama_1616 0.12 -1.2
1,977,607 - Sama_1616 0.12 +0.1
1,977,607 - Sama_1616 0.12 +1.9
1,977,609 + Sama_1616 0.12 -1.9
1,977,610 - Sama_1616 0.12 +0.3
1,977,610 - Sama_1616 0.12 -2.0
1,977,616 - Sama_1616 0.12 -0.4
1,977,650 + Sama_1616 0.14 -0.4
1,977,650 + Sama_1616 0.14 -0.9
1,977,650 + Sama_1616 0.14 +0.1
1,977,651 - Sama_1616 0.14 -0.5
1,977,651 - Sama_1616 0.14 -2.6
1,977,651 - Sama_1616 0.14 -0.2
1,977,651 - Sama_1616 0.14 -0.9
1,977,694 + Sama_1616 0.16 -2.2
1,977,696 + Sama_1616 0.16 -1.4
1,977,696 + Sama_1616 0.16 +0.1
1,977,697 - Sama_1616 0.16 -1.7
1,977,697 - Sama_1616 0.16 -0.5
1,977,697 - Sama_1616 0.16 -0.4
1,977,730 + Sama_1616 0.18 -0.5
1,977,731 - Sama_1616 0.18 +0.6
1,977,841 + Sama_1616 0.24 -2.1
1,977,884 + Sama_1616 0.27 +1.1
1,977,884 + Sama_1616 0.27 +0.3
1,977,885 - Sama_1616 0.27 +0.2
1,977,919 - Sama_1616 0.28 -1.7
1,977,931 - Sama_1616 0.29 -2.2
1,977,994 + Sama_1616 0.33 -1.6
1,977,995 - Sama_1616 0.33 -2.6
1,978,024 - Sama_1616 0.34 -0.2
1,978,024 - Sama_1616 0.34 -0.5
1,978,024 - Sama_1616 0.34 +0.8
1,978,044 + Sama_1616 0.35 -0.7
1,978,179 + Sama_1616 0.43 -0.5
1,978,179 + Sama_1616 0.43 -0.2
1,978,179 + Sama_1616 0.43 -0.2
1,978,179 + Sama_1616 0.43 +1.1
1,978,180 - Sama_1616 0.43 -2.1
1,978,180 - Sama_1616 0.43 -0.9
1,978,180 - Sama_1616 0.43 -1.9
1,978,180 - Sama_1616 0.43 +1.1
1,978,180 - Sama_1616 0.43 -0.5
1,978,180 - Sama_1616 0.43 -0.5
1,978,180 - Sama_1616 0.43 -0.4
1,978,180 - Sama_1616 0.43 +0.3
1,978,180 - Sama_1616 0.43 +0.1
1,978,181 + Sama_1616 0.43 -0.2
1,978,181 + Sama_1616 0.43 +1.1
1,978,181 + Sama_1616 0.43 -1.7
1,978,182 - Sama_1616 0.43 -2.9
1,978,182 - Sama_1616 0.43 -1.4
1,978,182 - Sama_1616 0.43 -0.2
1,978,182 - Sama_1616 0.43 -1.3
1,978,182 - Sama_1616 0.43 -0.5
1,978,182 - Sama_1616 0.43 -1.2
1,978,182 - Sama_1616 0.43 +2.5
1,978,197 + Sama_1616 0.44 -0.8
1,978,197 + Sama_1616 0.44 -1.9
1,978,201 + Sama_1616 0.44 -0.2
1,978,201 + Sama_1616 0.44 -1.1
1,978,264 + Sama_1616 0.47 +0.6
1,978,265 - Sama_1616 0.47 -1.9
1,978,266 + Sama_1616 0.47 +0.1
1,978,266 + Sama_1616 0.47 +0.6
1,978,266 + Sama_1616 0.47 -0.5
1,978,266 + Sama_1616 0.47 +0.8
1,978,266 + Sama_1616 0.47 -1.6
1,978,266 + Sama_1616 0.47 -0.4
1,978,266 + Sama_1616 0.47 +0.3
1,978,266 + Sama_1616 0.47 -1.9
1,978,267 - Sama_1616 0.47 +0.1
1,978,267 - Sama_1616 0.47 +0.5
1,978,267 - Sama_1616 0.47 +0.1
1,978,267 - Sama_1616 0.47 -0.8
1,978,267 - Sama_1616 0.47 +1.1
1,978,267 - Sama_1616 0.47 -1.4
1,978,267 - Sama_1616 0.47 -1.1
1,978,306 + Sama_1616 0.50 -1.3
1,978,336 + Sama_1616 0.51 -0.5
1,978,381 + Sama_1616 0.54 +0.3
1,978,382 - Sama_1616 0.54 +1.6
1,978,382 - Sama_1616 0.54 -1.3
1,978,400 + Sama_1616 0.55 -1.4
1,978,400 + Sama_1616 0.55 +1.1
1,978,401 - Sama_1616 0.55 -1.3
1,978,401 - Sama_1616 0.55 +0.6
1,978,402 + Sama_1616 0.55 -1.8
1,978,403 - Sama_1616 0.55 -1.7
1,978,503 - Sama_1616 0.60 +0.3
1,978,503 - Sama_1616 0.60 +0.3
1,978,522 - Sama_1616 0.61 -1.3
1,978,572 + Sama_1616 0.64 -2.5
1,978,572 + Sama_1616 0.64 +1.1
1,978,572 + Sama_1616 0.64 -0.4
1,978,604 - Sama_1616 0.66 +0.8
1,978,738 - Sama_1616 0.73 -1.4
1,978,753 - Sama_1616 0.74 -1.4
1,978,790 - Sama_1616 0.76 -0.1
1,978,800 + Sama_1616 0.76 -0.4
1,978,963 + Sama_1616 0.85 -0.7
1,978,964 - Sama_1616 0.85 -2.2
1,979,002 - Sama_1616 0.87 -1.2
1,979,002 - Sama_1616 0.87 -1.4
1,979,004 + Sama_1616 0.87 +0.1
1,979,004 + Sama_1616 0.87 -1.7
1,979,047 + Sama_1616 0.90 -1.9
1,979,047 + Sama_1616 0.90 -0.2
1,979,048 - Sama_1616 0.90 -0.8
1,979,048 - Sama_1616 0.90 +0.1
1,979,048 - Sama_1616 0.90 +0.1
1,979,069 + +0.6
1,979,069 + -0.2
1,979,070 - +0.3
1,979,130 - -0.2
1,979,145 - -0.4
1,979,145 - -0.2
1,979,153 + +0.6
1,979,154 - +0.3
1,979,154 - -1.1
1,979,262 + -1.9
1,979,289 - +0.3
1,979,363 - -0.4
1,979,373 - -0.5
1,979,385 + +0.6
1,979,385 + -0.9
1,979,385 + -1.3
1,979,615 + Sama_1617 0.19 +0.1
1,979,616 - Sama_1617 0.19 -0.7
1,979,621 + Sama_1617 0.20 +0.3
1,979,621 + Sama_1617 0.20 +1.1
1,979,622 - Sama_1617 0.20 +0.8
1,979,646 - Sama_1617 0.22 +0.1
1,979,668 - Sama_1617 0.24 +1.3
1,979,668 - Sama_1617 0.24 -0.4
1,979,747 + Sama_1617 0.33 -0.4
1,979,747 + Sama_1617 0.33 -0.9
1,979,748 - Sama_1617 0.33 +0.5
1,979,748 - Sama_1617 0.33 +1.1
1,979,793 - Sama_1617 0.37 -0.3
1,979,989 - Sama_1617 0.57 -0.9
1,979,989 - Sama_1617 0.57 +0.1
1,980,086 + Sama_1617 0.67 -0.9
1,980,086 + Sama_1617 0.67 -0.4
1,980,120 + Sama_1617 0.70 -1.7
1,980,120 + Sama_1617 0.70 +0.8
1,980,168 + Sama_1617 0.75 -0.4
1,980,169 - Sama_1617 0.75 -0.4
1,980,169 - Sama_1617 0.75 +1.1
1,980,181 - Sama_1617 0.77 -1.7
1,980,216 + Sama_1617 0.80 +0.1
1,980,216 + Sama_1617 0.80 +1.6
1,980,216 + Sama_1617 0.80 -1.7
1,980,217 - Sama_1617 0.80 -0.1

Or see this region's nucleotide sequence