Experiment: Lomefloxacin 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1615 and Sama_1616 overlap by 4 nucleotides Sama_1616 and Sama_1617 are separated by 193 nucleotides
Sama_1615: Sama_1615 - hypothetical protein (RefSeq), at 1,973,505 to 1,977,398
_1615
Sama_1616: Sama_1616 - hypothetical protein (RefSeq), at 1,977,395 to 1,979,233
_1616
Sama_1617: Sama_1617 - asparaginase family protein (RefSeq), at 1,979,427 to 1,980,410
_1617
Position (kb)
1977
1978
1979
1980 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1976.429 kb on + strand, within Sama_1615 at 1976.429 kb on + strand, within Sama_1615 at 1976.430 kb on - strand, within Sama_1615 at 1976.430 kb on - strand, within Sama_1615 at 1976.465 kb on + strand, within Sama_1615 at 1976.505 kb on - strand, within Sama_1615 at 1976.520 kb on - strand, within Sama_1615 at 1976.520 kb on - strand, within Sama_1615 at 1976.562 kb on + strand, within Sama_1615 at 1976.562 kb on + strand, within Sama_1615 at 1976.563 kb on - strand, within Sama_1615 at 1976.724 kb on - strand, within Sama_1615 at 1976.776 kb on - strand, within Sama_1615 at 1976.776 kb on - strand, within Sama_1615 at 1976.791 kb on - strand, within Sama_1615 at 1976.791 kb on - strand, within Sama_1615 at 1976.875 kb on - strand, within Sama_1615 at 1976.889 kb on + strand, within Sama_1615 at 1976.890 kb on - strand, within Sama_1615 at 1976.890 kb on - strand, within Sama_1615 at 1976.912 kb on + strand, within Sama_1615 at 1976.912 kb on + strand, within Sama_1615 at 1976.912 kb on + strand, within Sama_1615 at 1976.912 kb on + strand, within Sama_1615 at 1976.913 kb on - strand, within Sama_1615 at 1976.913 kb on - strand, within Sama_1615 at 1976.985 kb on + strand, within Sama_1615 at 1976.986 kb on - strand, within Sama_1615 at 1976.986 kb on - strand, within Sama_1615 at 1976.986 kb on - strand, within Sama_1615 at 1977.111 kb on + strand at 1977.111 kb on + strand at 1977.111 kb on + strand at 1977.111 kb on + strand at 1977.111 kb on + strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.112 kb on - strand at 1977.113 kb on + strand at 1977.114 kb on - strand at 1977.114 kb on - strand at 1977.114 kb on - strand at 1977.140 kb on + strand at 1977.154 kb on + strand at 1977.154 kb on + strand at 1977.154 kb on + strand at 1977.155 kb on - strand at 1977.155 kb on - strand at 1977.155 kb on - strand at 1977.266 kb on - strand at 1977.266 kb on - strand at 1977.266 kb on - strand at 1977.266 kb on - strand at 1977.266 kb on - strand at 1977.387 kb on - strand at 1977.399 kb on - strand at 1977.399 kb on - strand at 1977.422 kb on + strand at 1977.422 kb on + strand at 1977.422 kb on + strand at 1977.422 kb on + strand at 1977.422 kb on + strand at 1977.422 kb on + strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.423 kb on - strand at 1977.425 kb on - strand at 1977.425 kb on - strand at 1977.445 kb on + strand at 1977.446 kb on - strand at 1977.446 kb on + strand at 1977.465 kb on - strand at 1977.465 kb on - strand at 1977.491 kb on + strand at 1977.510 kb on - strand at 1977.528 kb on - strand at 1977.551 kb on - strand at 1977.607 kb on - strand, within Sama_1616 at 1977.607 kb on - strand, within Sama_1616 at 1977.607 kb on - strand, within Sama_1616 at 1977.609 kb on + strand, within Sama_1616 at 1977.610 kb on - strand, within Sama_1616 at 1977.610 kb on - strand, within Sama_1616 at 1977.616 kb on - strand, within Sama_1616 at 1977.650 kb on + strand, within Sama_1616 at 1977.650 kb on + strand, within Sama_1616 at 1977.650 kb on + strand, within Sama_1616 at 1977.651 kb on - strand, within Sama_1616 at 1977.651 kb on - strand, within Sama_1616 at 1977.651 kb on - strand, within Sama_1616 at 1977.651 kb on - strand, within Sama_1616 at 1977.694 kb on + strand, within Sama_1616 at 1977.696 kb on + strand, within Sama_1616 at 1977.696 kb on + strand, within Sama_1616 at 1977.697 kb on - strand, within Sama_1616 at 1977.697 kb on - strand, within Sama_1616 at 1977.697 kb on - strand, within Sama_1616 at 1977.730 kb on + strand, within Sama_1616 at 1977.731 kb on - strand, within Sama_1616 at 1977.841 kb on + strand, within Sama_1616 at 1977.884 kb on + strand, within Sama_1616 at 1977.884 kb on + strand, within Sama_1616 at 1977.885 kb on - strand, within Sama_1616 at 1977.919 kb on - strand, within Sama_1616 at 1977.931 kb on - strand, within Sama_1616 at 1977.994 kb on + strand, within Sama_1616 at 1977.995 kb on - strand, within Sama_1616 at 1978.024 kb on - strand, within Sama_1616 at 1978.024 kb on - strand, within Sama_1616 at 1978.024 kb on - strand, within Sama_1616 at 1978.044 kb on + strand, within Sama_1616 at 1978.179 kb on + strand, within Sama_1616 at 1978.179 kb on + strand, within Sama_1616 at 1978.179 kb on + strand, within Sama_1616 at 1978.179 kb on + strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.180 kb on - strand, within Sama_1616 at 1978.181 kb on + strand, within Sama_1616 at 1978.181 kb on + strand, within Sama_1616 at 1978.181 kb on + strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.182 kb on - strand, within Sama_1616 at 1978.197 kb on + strand, within Sama_1616 at 1978.197 kb on + strand, within Sama_1616 at 1978.201 kb on + strand, within Sama_1616 at 1978.201 kb on + strand, within Sama_1616 at 1978.264 kb on + strand, within Sama_1616 at 1978.265 kb on - strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.266 kb on + strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.267 kb on - strand, within Sama_1616 at 1978.306 kb on + strand, within Sama_1616 at 1978.336 kb on + strand, within Sama_1616 at 1978.381 kb on + strand, within Sama_1616 at 1978.382 kb on - strand, within Sama_1616 at 1978.382 kb on - strand, within Sama_1616 at 1978.400 kb on + strand, within Sama_1616 at 1978.400 kb on + strand, within Sama_1616 at 1978.401 kb on - strand, within Sama_1616 at 1978.401 kb on - strand, within Sama_1616 at 1978.402 kb on + strand, within Sama_1616 at 1978.403 kb on - strand, within Sama_1616 at 1978.503 kb on - strand, within Sama_1616 at 1978.503 kb on - strand, within Sama_1616 at 1978.522 kb on - strand, within Sama_1616 at 1978.572 kb on + strand, within Sama_1616 at 1978.572 kb on + strand, within Sama_1616 at 1978.572 kb on + strand, within Sama_1616 at 1978.604 kb on - strand, within Sama_1616 at 1978.738 kb on - strand, within Sama_1616 at 1978.753 kb on - strand, within Sama_1616 at 1978.790 kb on - strand, within Sama_1616 at 1978.800 kb on + strand, within Sama_1616 at 1978.963 kb on + strand, within Sama_1616 at 1978.964 kb on - strand, within Sama_1616 at 1979.002 kb on - strand, within Sama_1616 at 1979.002 kb on - strand, within Sama_1616 at 1979.004 kb on + strand, within Sama_1616 at 1979.004 kb on + strand, within Sama_1616 at 1979.047 kb on + strand, within Sama_1616 at 1979.047 kb on + strand, within Sama_1616 at 1979.048 kb on - strand, within Sama_1616 at 1979.048 kb on - strand, within Sama_1616 at 1979.048 kb on - strand, within Sama_1616 at 1979.069 kb on + strand at 1979.069 kb on + strand at 1979.070 kb on - strand at 1979.130 kb on - strand at 1979.145 kb on - strand at 1979.145 kb on - strand at 1979.153 kb on + strand at 1979.154 kb on - strand at 1979.154 kb on - strand at 1979.262 kb on + strand at 1979.289 kb on - strand at 1979.363 kb on - strand at 1979.373 kb on - strand at 1979.385 kb on + strand at 1979.385 kb on + strand at 1979.385 kb on + strand at 1979.615 kb on + strand, within Sama_1617 at 1979.616 kb on - strand, within Sama_1617 at 1979.621 kb on + strand, within Sama_1617 at 1979.621 kb on + strand, within Sama_1617 at 1979.622 kb on - strand, within Sama_1617 at 1979.646 kb on - strand, within Sama_1617 at 1979.668 kb on - strand, within Sama_1617 at 1979.668 kb on - strand, within Sama_1617 at 1979.747 kb on + strand, within Sama_1617 at 1979.747 kb on + strand, within Sama_1617 at 1979.748 kb on - strand, within Sama_1617 at 1979.748 kb on - strand, within Sama_1617 at 1979.793 kb on - strand, within Sama_1617 at 1979.989 kb on - strand, within Sama_1617 at 1979.989 kb on - strand, within Sama_1617 at 1980.086 kb on + strand, within Sama_1617 at 1980.086 kb on + strand, within Sama_1617 at 1980.120 kb on + strand, within Sama_1617 at 1980.120 kb on + strand, within Sama_1617 at 1980.168 kb on + strand, within Sama_1617 at 1980.169 kb on - strand, within Sama_1617 at 1980.169 kb on - strand, within Sama_1617 at 1980.181 kb on - strand, within Sama_1617 at 1980.216 kb on + strand, within Sama_1617 at 1980.216 kb on + strand, within Sama_1617 at 1980.216 kb on + strand, within Sama_1617 at 1980.217 kb on - strand, within Sama_1617
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.000390625 mM remove 1,976,429 + Sama_1615 0.75 -0.5 1,976,429 + Sama_1615 0.75 -1.9 1,976,430 - Sama_1615 0.75 -0.3 1,976,430 - Sama_1615 0.75 -1.6 1,976,465 + Sama_1615 0.76 +1.6 1,976,505 - Sama_1615 0.77 -2.0 1,976,520 - Sama_1615 0.77 +0.3 1,976,520 - Sama_1615 0.77 +0.1 1,976,562 + Sama_1615 0.79 -0.9 1,976,562 + Sama_1615 0.79 -0.9 1,976,563 - Sama_1615 0.79 -1.4 1,976,724 - Sama_1615 0.83 -2.1 1,976,776 - Sama_1615 0.84 -1.3 1,976,776 - Sama_1615 0.84 -1.1 1,976,791 - Sama_1615 0.84 -1.8 1,976,791 - Sama_1615 0.84 +0.6 1,976,875 - Sama_1615 0.87 +1.2 1,976,889 + Sama_1615 0.87 +0.1 1,976,890 - Sama_1615 0.87 -0.8 1,976,890 - Sama_1615 0.87 +0.6 1,976,912 + Sama_1615 0.87 -0.4 1,976,912 + Sama_1615 0.87 -0.5 1,976,912 + Sama_1615 0.87 +0.1 1,976,912 + Sama_1615 0.87 +2.1 1,976,913 - Sama_1615 0.88 -0.7 1,976,913 - Sama_1615 0.88 -0.3 1,976,985 + Sama_1615 0.89 -1.3 1,976,986 - Sama_1615 0.89 -1.1 1,976,986 - Sama_1615 0.89 -0.9 1,976,986 - Sama_1615 0.89 -0.4 1,977,111 + -0.5 1,977,111 + -0.7 1,977,111 + -0.7 1,977,111 + -2.6 1,977,111 + -2.0 1,977,112 - -0.4 1,977,112 - -1.7 1,977,112 - -0.8 1,977,112 - -3.4 1,977,112 - -0.4 1,977,112 - -1.9 1,977,112 - -0.5 1,977,113 + +0.8 1,977,114 - +0.6 1,977,114 - -1.7 1,977,114 - -1.5 1,977,140 + +1.3 1,977,154 + -1.3 1,977,154 + -1.2 1,977,154 + -2.0 1,977,155 - -1.3 1,977,155 - -0.4 1,977,155 - +0.1 1,977,266 - +0.3 1,977,266 - -0.5 1,977,266 - +0.1 1,977,266 - -1.2 1,977,266 - -1.2 1,977,387 - +0.1 1,977,399 - -0.2 1,977,399 - +0.3 1,977,422 + -0.2 1,977,422 + -0.6 1,977,422 + -1.1 1,977,422 + +0.6 1,977,422 + -0.5 1,977,422 + -0.1 1,977,423 - -0.7 1,977,423 - +0.1 1,977,423 - -3.2 1,977,423 - +0.1 1,977,423 - +0.6 1,977,423 - +0.6 1,977,423 - +0.3 1,977,425 - +1.3 1,977,425 - +0.5 1,977,445 + -0.9 1,977,446 - -0.9 1,977,446 + +0.6 1,977,465 - -1.1 1,977,465 - -0.2 1,977,491 + -0.5 1,977,510 - -1.5 1,977,528 - +0.1 1,977,551 - -0.8 1,977,607 - Sama_1616 0.12 -1.2 1,977,607 - Sama_1616 0.12 +0.1 1,977,607 - Sama_1616 0.12 +1.9 1,977,609 + Sama_1616 0.12 -1.9 1,977,610 - Sama_1616 0.12 +0.3 1,977,610 - Sama_1616 0.12 -2.0 1,977,616 - Sama_1616 0.12 -0.4 1,977,650 + Sama_1616 0.14 -0.4 1,977,650 + Sama_1616 0.14 -0.9 1,977,650 + Sama_1616 0.14 +0.1 1,977,651 - Sama_1616 0.14 -0.5 1,977,651 - Sama_1616 0.14 -2.6 1,977,651 - Sama_1616 0.14 -0.2 1,977,651 - Sama_1616 0.14 -0.9 1,977,694 + Sama_1616 0.16 -2.2 1,977,696 + Sama_1616 0.16 -1.4 1,977,696 + Sama_1616 0.16 +0.1 1,977,697 - Sama_1616 0.16 -1.7 1,977,697 - Sama_1616 0.16 -0.5 1,977,697 - Sama_1616 0.16 -0.4 1,977,730 + Sama_1616 0.18 -0.5 1,977,731 - Sama_1616 0.18 +0.6 1,977,841 + Sama_1616 0.24 -2.1 1,977,884 + Sama_1616 0.27 +1.1 1,977,884 + Sama_1616 0.27 +0.3 1,977,885 - Sama_1616 0.27 +0.2 1,977,919 - Sama_1616 0.28 -1.7 1,977,931 - Sama_1616 0.29 -2.2 1,977,994 + Sama_1616 0.33 -1.6 1,977,995 - Sama_1616 0.33 -2.6 1,978,024 - Sama_1616 0.34 -0.2 1,978,024 - Sama_1616 0.34 -0.5 1,978,024 - Sama_1616 0.34 +0.8 1,978,044 + Sama_1616 0.35 -0.7 1,978,179 + Sama_1616 0.43 -0.5 1,978,179 + Sama_1616 0.43 -0.2 1,978,179 + Sama_1616 0.43 -0.2 1,978,179 + Sama_1616 0.43 +1.1 1,978,180 - Sama_1616 0.43 -2.1 1,978,180 - Sama_1616 0.43 -0.9 1,978,180 - Sama_1616 0.43 -1.9 1,978,180 - Sama_1616 0.43 +1.1 1,978,180 - Sama_1616 0.43 -0.5 1,978,180 - Sama_1616 0.43 -0.5 1,978,180 - Sama_1616 0.43 -0.4 1,978,180 - Sama_1616 0.43 +0.3 1,978,180 - Sama_1616 0.43 +0.1 1,978,181 + Sama_1616 0.43 -0.2 1,978,181 + Sama_1616 0.43 +1.1 1,978,181 + Sama_1616 0.43 -1.7 1,978,182 - Sama_1616 0.43 -2.9 1,978,182 - Sama_1616 0.43 -1.4 1,978,182 - Sama_1616 0.43 -0.2 1,978,182 - Sama_1616 0.43 -1.3 1,978,182 - Sama_1616 0.43 -0.5 1,978,182 - Sama_1616 0.43 -1.2 1,978,182 - Sama_1616 0.43 +2.5 1,978,197 + Sama_1616 0.44 -0.8 1,978,197 + Sama_1616 0.44 -1.9 1,978,201 + Sama_1616 0.44 -0.2 1,978,201 + Sama_1616 0.44 -1.1 1,978,264 + Sama_1616 0.47 +0.6 1,978,265 - Sama_1616 0.47 -1.9 1,978,266 + Sama_1616 0.47 +0.1 1,978,266 + Sama_1616 0.47 +0.6 1,978,266 + Sama_1616 0.47 -0.5 1,978,266 + Sama_1616 0.47 +0.8 1,978,266 + Sama_1616 0.47 -1.6 1,978,266 + Sama_1616 0.47 -0.4 1,978,266 + Sama_1616 0.47 +0.3 1,978,266 + Sama_1616 0.47 -1.9 1,978,267 - Sama_1616 0.47 +0.1 1,978,267 - Sama_1616 0.47 +0.5 1,978,267 - Sama_1616 0.47 +0.1 1,978,267 - Sama_1616 0.47 -0.8 1,978,267 - Sama_1616 0.47 +1.1 1,978,267 - Sama_1616 0.47 -1.4 1,978,267 - Sama_1616 0.47 -1.1 1,978,306 + Sama_1616 0.50 -1.3 1,978,336 + Sama_1616 0.51 -0.5 1,978,381 + Sama_1616 0.54 +0.3 1,978,382 - Sama_1616 0.54 +1.6 1,978,382 - Sama_1616 0.54 -1.3 1,978,400 + Sama_1616 0.55 -1.4 1,978,400 + Sama_1616 0.55 +1.1 1,978,401 - Sama_1616 0.55 -1.3 1,978,401 - Sama_1616 0.55 +0.6 1,978,402 + Sama_1616 0.55 -1.8 1,978,403 - Sama_1616 0.55 -1.7 1,978,503 - Sama_1616 0.60 +0.3 1,978,503 - Sama_1616 0.60 +0.3 1,978,522 - Sama_1616 0.61 -1.3 1,978,572 + Sama_1616 0.64 -2.5 1,978,572 + Sama_1616 0.64 +1.1 1,978,572 + Sama_1616 0.64 -0.4 1,978,604 - Sama_1616 0.66 +0.8 1,978,738 - Sama_1616 0.73 -1.4 1,978,753 - Sama_1616 0.74 -1.4 1,978,790 - Sama_1616 0.76 -0.1 1,978,800 + Sama_1616 0.76 -0.4 1,978,963 + Sama_1616 0.85 -0.7 1,978,964 - Sama_1616 0.85 -2.2 1,979,002 - Sama_1616 0.87 -1.2 1,979,002 - Sama_1616 0.87 -1.4 1,979,004 + Sama_1616 0.87 +0.1 1,979,004 + Sama_1616 0.87 -1.7 1,979,047 + Sama_1616 0.90 -1.9 1,979,047 + Sama_1616 0.90 -0.2 1,979,048 - Sama_1616 0.90 -0.8 1,979,048 - Sama_1616 0.90 +0.1 1,979,048 - Sama_1616 0.90 +0.1 1,979,069 + +0.6 1,979,069 + -0.2 1,979,070 - +0.3 1,979,130 - -0.2 1,979,145 - -0.4 1,979,145 - -0.2 1,979,153 + +0.6 1,979,154 - +0.3 1,979,154 - -1.1 1,979,262 + -1.9 1,979,289 - +0.3 1,979,363 - -0.4 1,979,373 - -0.5 1,979,385 + +0.6 1,979,385 + -0.9 1,979,385 + -1.3 1,979,615 + Sama_1617 0.19 +0.1 1,979,616 - Sama_1617 0.19 -0.7 1,979,621 + Sama_1617 0.20 +0.3 1,979,621 + Sama_1617 0.20 +1.1 1,979,622 - Sama_1617 0.20 +0.8 1,979,646 - Sama_1617 0.22 +0.1 1,979,668 - Sama_1617 0.24 +1.3 1,979,668 - Sama_1617 0.24 -0.4 1,979,747 + Sama_1617 0.33 -0.4 1,979,747 + Sama_1617 0.33 -0.9 1,979,748 - Sama_1617 0.33 +0.5 1,979,748 - Sama_1617 0.33 +1.1 1,979,793 - Sama_1617 0.37 -0.3 1,979,989 - Sama_1617 0.57 -0.9 1,979,989 - Sama_1617 0.57 +0.1 1,980,086 + Sama_1617 0.67 -0.9 1,980,086 + Sama_1617 0.67 -0.4 1,980,120 + Sama_1617 0.70 -1.7 1,980,120 + Sama_1617 0.70 +0.8 1,980,168 + Sama_1617 0.75 -0.4 1,980,169 - Sama_1617 0.75 -0.4 1,980,169 - Sama_1617 0.75 +1.1 1,980,181 - Sama_1617 0.77 -1.7 1,980,216 + Sama_1617 0.80 +0.1 1,980,216 + Sama_1617 0.80 +1.6 1,980,216 + Sama_1617 0.80 -1.7 1,980,217 - Sama_1617 0.80 -0.1
Or see this region's nucleotide sequence