Strain Fitness in Shewanella amazonensis SB2B

Strain Fitness in Shewanella amazonensis SB2B around Sama_1056

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
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1,277,007	-	Sama_1055	0.42	-0.5
1,277,038	-	Sama_1055	0.45	-1.7
1,277,049	-	Sama_1055	0.46	+0.2
1,277,049	-	Sama_1055	0.46	-0.0
1,277,049	-	Sama_1055	0.46	-0.9
1,277,049	-	Sama_1055	0.46	-0.8
1,277,049	-	Sama_1055	0.46	-1.3
1,277,071	-	Sama_1055	0.48	+0.7
1,277,071	-	Sama_1055	0.48	-0.8
1,277,150	+	Sama_1055	0.54	+0.9
1,277,151	-	Sama_1055	0.54	-0.6
1,277,180	-	Sama_1055	0.56	-2.5
1,277,220	-	Sama_1055	0.59	-0.1
1,277,220	-	Sama_1055	0.59	+0.3
1,277,286	-	Sama_1055	0.65	-0.4
1,277,345	-	Sama_1055	0.69	+1.4
1,277,373	-	Sama_1055	0.72	-2.8
1,277,512	+	Sama_1055	0.83	+2.7
1,277,513	-	Sama_1055	0.83	-1.2
1,277,513	-	Sama_1055	0.83	-1.5
1,277,542	+	Sama_1055	0.85	-1.1
1,277,543	-	Sama_1055	0.85	-0.0
1,277,543	-	Sama_1055	0.85	+1.2
1,277,599	+	Sama_1055	0.90	-0.8
1,277,600	-	Sama_1055	0.90	-1.0
1,277,600	-	Sama_1055	0.90	-2.2
1,277,660	+			-2.1
1,277,770	+			+1.1
1,277,857	+			-0.3
1,277,857	+			-0.4
1,277,857	+			-2.4
1,277,857	+			-0.1
1,277,857	+			+1.7
1,277,857	+			-0.1
1,277,857	+			-0.7
1,277,857	+			+0.1
1,277,858	-			+0.3
1,277,858	-			-1.4
1,277,858	-			-0.3
1,277,858	-			+0.9
1,277,858	-			-0.9
1,277,858	-			+0.3
1,277,858	-			-1.9
1,277,858	-			-0.8
1,277,858	-			+1.3
1,277,858	-			-1.2
1,277,858	-			-0.3
1,277,858	-			+0.4
1,277,860	-			+1.3
1,277,860	-			-0.3
1,277,860	-			-0.1
1,277,895	-			-1.0
1,277,896	+			-0.3
1,277,902	-			-1.9
1,277,916	-			+0.5
1,277,939	+			-0.9
1,277,943	+			-1.4
1,277,944	-			-0.3
1,277,944	-			-0.9
1,277,949	+			-0.8
1,277,949	+			-0.8
1,278,048	-	Sama_1056	0.17	-0.1
1,278,121	-	Sama_1056	0.35	-1.7
1,278,121	-	Sama_1056	0.35	-1.3
1,278,121	-	Sama_1056	0.35	-2.5
1,278,229	+	Sama_1056	0.60	-0.8
1,278,229	+	Sama_1056	0.60	-0.1
1,278,230	-	Sama_1056	0.61	-1.9
1,278,230	-	Sama_1056	0.61	-0.8
1,278,230	-	Sama_1056	0.61	+0.1
1,278,324	+	Sama_1056	0.83	-1.4
1,278,324	+	Sama_1056	0.83	-0.7
1,278,325	-	Sama_1056	0.83	-0.4
1,278,325	-	Sama_1056	0.83	-0.5
1,278,358	+			+1.1
1,278,371	+			-0.1
1,278,371	+			+0.5
1,278,371	+			-0.2
1,278,371	+			+0.7
1,278,404	+			-2.4
1,278,404	+			-0.1
1,278,404	+			+1.7
1,278,405	-			-0.9
1,278,439	+			+0.7
1,278,440	-			+0.2
1,278,452	+			+1.9
1,278,452	+			-1.4
1,278,466	+			-0.5
1,278,473	+			-0.5
1,278,477	+			-2.1
1,278,477	+			-1.1
1,278,477	+			-0.9
1,278,478	-			+0.4
1,278,478	-			-0.8
1,278,481	+			-1.2
1,278,481	+			-1.0
1,278,482	-			+0.4
1,278,482	-			+0.3
1,278,482	-			-0.8
1,278,487	+			+0.5
1,278,487	+			-0.6
1,278,487	+			+0.2
1,278,488	-			-1.4
1,278,499	+			-0.9
1,278,499	+			-1.8
1,278,500	-			-0.2
1,278,504	-			-2.8
1,278,504	-			-0.1
1,278,639	+			-1.3
1,278,640	-			-0.3
1,278,646	+			-0.8
1,278,646	+			+0.1
1,278,646	+			-0.5
1,278,646	+			-1.1
1,278,646	+			-0.8
1,278,647	-			-0.8
1,278,647	-			+0.9
1,278,684	-			-1.7
1,278,684	-			-0.8
1,278,684	-			+0.7
1,278,731	-			+0.2
1,278,731	-			+1.5
1,278,731	-			-1.6
1,278,792	+	Sama_1057	0.10	+1.2
1,278,792	+	Sama_1057	0.10	-0.7
1,278,792	+	Sama_1057	0.10	-1.1
1,278,792	+	Sama_1057	0.10	+0.3
1,278,792	+	Sama_1057	0.10	-0.7
1,278,792	+	Sama_1057	0.10	+0.5
1,278,792	+	Sama_1057	0.10	-1.4
1,278,792	+	Sama_1057	0.10	-0.1
1,278,792	+	Sama_1057	0.10	+0.2
1,278,792	+	Sama_1057	0.10	+0.1
1,278,792	+	Sama_1057	0.10	-0.9
1,278,792	+	Sama_1057	0.10	-0.1
1,278,792	+	Sama_1057	0.10	+0.1
1,278,792	+	Sama_1057	0.10	-0.8
1,278,792	+	Sama_1057	0.10	+0.4
1,278,793	-	Sama_1057	0.10	+0.3
1,278,793	-	Sama_1057	0.10	-0.7
1,278,793	-	Sama_1057	0.10	+1.1
1,278,793	-	Sama_1057	0.10	-0.8
1,278,793	-	Sama_1057	0.10	-0.8
1,278,793	-	Sama_1057	0.10	-1.4
1,278,793	-	Sama_1057	0.10	+0.3
1,278,793	-	Sama_1057	0.10	-0.3
1,278,793	-	Sama_1057	0.10	+0.1
1,278,793	-	Sama_1057	0.10	-1.7
1,278,793	-	Sama_1057	0.10	+0.9
1,278,793	-	Sama_1057	0.10	-2.3
1,278,793	-	Sama_1057	0.10	-0.5
1,278,838	-	Sama_1057	0.12	-0.7
1,278,838	-	Sama_1057	0.12	-0.5
1,278,838	-	Sama_1057	0.12	-1.0
1,278,898	+	Sama_1057	0.14	-0.1
1,278,899	-	Sama_1057	0.14	-1.9
1,278,919	-	Sama_1057	0.15	-0.3
1,278,919	-	Sama_1057	0.15	+0.1
1,279,062	+	Sama_1057	0.20	-0.5
1,279,062	+	Sama_1057	0.20	+2.0
1,279,062	+	Sama_1057	0.20	-1.1
1,279,062	+	Sama_1057	0.20	-1.2
1,279,062	+	Sama_1057	0.20	-2.6
1,279,063	-	Sama_1057	0.20	-0.2
1,279,066	+	Sama_1057	0.20	-0.8
1,279,066	+	Sama_1057	0.20	-0.8
1,279,066	+	Sama_1057	0.20	-0.4
1,279,066	+	Sama_1057	0.20	-1.1
1,279,067	-	Sama_1057	0.20	+0.1
1,279,067	-	Sama_1057	0.20	+0.8
1,279,067	-	Sama_1057	0.20	-1.2
1,279,067	-	Sama_1057	0.20	-0.4
1,279,090	+	Sama_1057	0.21	+1.1
1,279,091	-	Sama_1057	0.21	+0.3
1,279,108	+	Sama_1057	0.21	+0.2
1,279,108	+	Sama_1057	0.21	-1.1
1,279,109	-	Sama_1057	0.21	-0.4
1,279,189	+	Sama_1057	0.24	+0.5
1,279,190	-	Sama_1057	0.24	+0.3
1,279,190	-	Sama_1057	0.24	-1.2
1,279,265	-	Sama_1057	0.27	-0.5
1,279,276	-	Sama_1057	0.27	+1.1
1,279,276	-	Sama_1057	0.27	+3.1
1,279,276	-	Sama_1057	0.27	-0.8
1,279,276	-	Sama_1057	0.27	+0.8
1,279,320	-	Sama_1057	0.29	-0.7
1,279,339	+	Sama_1057	0.29	-1.6
1,279,339	+	Sama_1057	0.29	-1.2
1,279,339	+	Sama_1057	0.29	-1.1
1,279,339	+	Sama_1057	0.29	+0.5
1,279,339	+	Sama_1057	0.29	+0.2
1,279,339	+	Sama_1057	0.29	+1.7
1,279,339	+	Sama_1057	0.29	+0.7
1,279,339	+	Sama_1057	0.29	-2.1
1,279,340	-	Sama_1057	0.29	-0.3
1,279,340	-	Sama_1057	0.29	-1.6
1,279,361	+	Sama_1057	0.30	+0.3
1,279,361	+	Sama_1057	0.30	+0.5
1,279,361	+	Sama_1057	0.30	-0.0
1,279,361	+	Sama_1057	0.30	+0.2
1,279,361	+	Sama_1057	0.30	-1.7
1,279,362	-	Sama_1057	0.30	+0.4
1,279,362	-	Sama_1057	0.30	+0.1
1,279,381	-	Sama_1057	0.31	+0.7

Or see this region's nucleotide sequence