Strain Fitness in Shewanella amazonensis SB2B around Sama_0999

Experiment: Lomefloxacin 0.000390625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Lomefloxacin 0.000390625 mM
1,210,328	+		Sama_0998	0.16	-0.5
1,210,328	+		Sama_0998	0.16	-0.1
1,210,328	+		Sama_0998	0.16	+0.0
1,210,328	+		Sama_0998	0.16	+0.1
1,210,328	+		Sama_0998	0.16	-0.9
1,210,328	+		Sama_0998	0.16	-0.2
1,210,329	-		Sama_0998	0.16	+0.1
1,210,436	+		Sama_0998	0.26	-0.8
1,210,436	+		Sama_0998	0.26	-1.5
1,210,437	-		Sama_0998	0.27	+0.2
1,210,437	-		Sama_0998	0.27	-0.8
1,210,437	-		Sama_0998	0.27	+0.6
1,210,476	+		Sama_0998	0.30	-1.1
1,210,476	+		Sama_0998	0.30	-0.2
1,210,476	+		Sama_0998	0.30	-1.7
1,210,476	+		Sama_0998	0.30	+0.3
1,210,476	+		Sama_0998	0.30	-1.9
1,210,476	+		Sama_0998	0.30	+0.9
1,210,476	+		Sama_0998	0.30	-0.7
1,210,477	-		Sama_0998	0.31	-0.8
1,210,477	-		Sama_0998	0.31	-0.4
1,210,477	-		Sama_0998	0.31	+1.9
1,210,477	-		Sama_0998	0.31	-1.8
1,210,477	-		Sama_0998	0.31	-0.1
1,210,477	-		Sama_0998	0.31	-0.4
1,210,477	-		Sama_0998	0.31	-0.2
1,210,477	-		Sama_0998	0.31	-0.8
1,210,480	+		Sama_0998	0.31	-1.7
1,210,480	+		Sama_0998	0.31	+0.2
1,210,480	+		Sama_0998	0.31	-0.5
1,210,481	-		Sama_0998	0.31	-0.2
1,210,481	-		Sama_0998	0.31	-1.8
1,210,519	-		Sama_0998	0.35	-0.7
1,210,526	-		Sama_0998	0.35	-0.4
1,210,631	+		Sama_0998	0.46	-0.7
1,210,631	+		Sama_0998	0.46	-1.7
1,210,631	+		Sama_0998	0.46	+1.1
1,210,631	+		Sama_0998	0.46	-0.4
1,210,632	-		Sama_0998	0.46	+1.1
1,210,632	-		Sama_0998	0.46	-1.5
1,210,632	-		Sama_0998	0.46	+0.6
1,210,675	-		Sama_0998	0.50	-0.2
1,210,675	-		Sama_0998	0.50	-0.5
1,210,768	+		Sama_0998	0.60	-1.7
1,210,768	+		Sama_0998	0.60	-1.3
1,210,769	-		Sama_0998	0.60	-0.4
1,210,769	-		Sama_0998	0.60	-0.3
1,210,769	-		Sama_0998	0.60	-0.2
1,210,770	+		Sama_0998	0.60	-0.4
1,210,787	+		Sama_0998	0.61	-0.9
1,210,787	+		Sama_0998	0.61	+0.2
1,210,788	-		Sama_0998	0.62	-0.4
1,210,788	-		Sama_0998	0.62	-2.5
1,210,868	+		Sama_0998	0.70	+0.2
1,210,868	+		Sama_0998	0.70	-0.5
1,210,869	-		Sama_0998	0.70	-0.2
1,210,885	-		Sama_0998	0.71	-1.2
1,210,885	-		Sama_0998	0.71	+3.6
1,210,912	+		Sama_0998	0.74	+0.8
1,210,913	-		Sama_0998	0.74	-0.4
1,210,941	-		Sama_0998	0.77	-2.2
1,210,974	+		Sama_0998	0.80	+0.6
1,210,974	+		Sama_0998	0.80	-0.4
1,210,975	-		Sama_0998	0.80	-0.8
1,210,975	-		Sama_0998	0.80	-0.7
1,210,975	-		Sama_0998	0.80	-0.8
1,210,975	-		Sama_0998	0.80	+0.3
1,211,079	+				-0.2
1,211,079	+				+0.6
1,211,191	+				-2.2
1,211,212	+				+0.6
1,211,213	-				+1.1
1,211,213	-				+1.3
1,211,242	+				-0.0
1,211,242	+				+1.1
1,211,242	+				+0.1
1,211,243	-				-1.9
1,211,243	-				-0.2
1,211,261	+				+2.1
1,211,262	-				-1.5
1,211,273	-				-1.1
1,211,304	-				-0.1
1,211,426	+		Sama_0999	0.21	-1.1
1,211,427	-		Sama_0999	0.22	-1.8
1,211,427	-		Sama_0999	0.22	-1.6
1,211,427	-		Sama_0999	0.22	-0.7
1,211,427	-		Sama_0999	0.22	-0.5
1,211,427	-		Sama_0999	0.22	-0.2
1,211,563	+		Sama_0999	0.48	-1.5
1,211,563	+		Sama_0999	0.48	-1.0
1,211,563	+		Sama_0999	0.48	-0.5
1,211,564	-		Sama_0999	0.48	+0.5
1,211,621	+		Sama_0999	0.59	-0.2
1,211,622	-		Sama_0999	0.60	-0.0
1,211,648	+		Sama_0999	0.65	-0.9
1,211,648	+		Sama_0999	0.65	-1.5
1,211,675	+		Sama_0999	0.70	-2.9
1,211,687	+		Sama_0999	0.72	-1.3
1,211,687	+		Sama_0999	0.72	-1.7
1,211,688	-		Sama_0999	0.73	-0.3
1,211,838	+				-0.9
1,211,839	-				+0.3
1,211,860	+				-1.5
1,211,860	+				+0.2
1,211,886	+				+0.7
1,211,887	-				+1.1
1,211,887	-				-0.2
1,211,887	-				-0.7
1,211,887	-				-1.3
1,211,887	-				-0.7
1,211,888	+				+0.4
1,211,889	-				-0.3
1,211,890	+				-0.2
1,211,937	-				-1.6
1,211,941	+				-1.3
1,211,941	+				+0.1
1,211,942	-				+1.2
1,211,942	-				-2.1
1,211,969	+				-1.4
1,211,970	-				+0.1
1,212,006	-				-0.7
1,212,009	+				+0.7
1,212,009	+				+1.4
1,212,009	+				+0.7
1,212,009	+				-1.0
1,212,009	+				-2.3
1,212,009	+				-0.9
1,212,010	-				-2.0
1,212,010	-				-0.5
1,212,010	-				+1.1
1,212,042	+				-0.3
1,212,043	-				-0.6
1,212,099	+		Sama_1000	0.12	-1.4
1,212,099	+		Sama_1000	0.12	-1.5
1,212,099	+		Sama_1000	0.12	-0.3
1,212,100	-		Sama_1000	0.12	+2.1
1,212,100	-		Sama_1000	0.12	-1.2
1,212,110	+		Sama_1000	0.13	-0.8
1,212,110	+		Sama_1000	0.13	+0.2
1,212,110	+		Sama_1000	0.13	-0.7
1,212,111	-		Sama_1000	0.13	+0.1
1,212,111	-		Sama_1000	0.13	-0.4
1,212,111	-		Sama_1000	0.13	-1.8
1,212,111	-		Sama_1000	0.13	-0.7
1,212,111	-		Sama_1000	0.13	-0.4
1,212,111	-		Sama_1000	0.13	+1.2
1,212,113	+		Sama_1000	0.13	-1.3
1,212,113	+		Sama_1000	0.13	+1.1
1,212,114	-		Sama_1000	0.14	-0.6
1,212,114	-		Sama_1000	0.14	-0.7
1,212,136	+		Sama_1000	0.16	-0.3
1,212,137	-		Sama_1000	0.16	-0.0
1,212,137	-		Sama_1000	0.16	+1.4
1,212,196	+		Sama_1000	0.21	-1.7
1,212,197	-		Sama_1000	0.21	+0.8
1,212,211	-		Sama_1000	0.23	-1.0
1,212,463	+		Sama_1000	0.46	-0.3
1,212,463	+		Sama_1000	0.46	-1.3
1,212,463	+		Sama_1000	0.46	-1.7
1,212,464	-		Sama_1000	0.46	-0.8
1,212,464	-		Sama_1000	0.46	-1.3
1,212,466	+		Sama_1000	0.47	+0.7
1,212,503	+		Sama_1000	0.50	-1.0
1,212,557	+		Sama_1000	0.55	-0.2
1,212,558	-		Sama_1000	0.55	+0.3
1,212,624	+		Sama_1000	0.61	-0.4
1,212,624	+		Sama_1000	0.61	+0.5
1,212,624	+		Sama_1000	0.61	-0.3
1,212,624	+		Sama_1000	0.61	-1.2
1,212,624	+		Sama_1000	0.61	+1.7
1,212,624	+		Sama_1000	0.61	-1.8
1,212,624	+		Sama_1000	0.61	-1.0
1,212,624	+		Sama_1000	0.61	-0.7
1,212,624	+		Sama_1000	0.61	+0.7
1,212,624	+		Sama_1000	0.61	+1.3
1,212,624	+		Sama_1000	0.61	-2.4
1,212,625	-		Sama_1000	0.62	+0.2
1,212,625	-		Sama_1000	0.62	-0.2
1,212,625	-		Sama_1000	0.62	-0.4
1,212,625	-		Sama_1000	0.62	+0.3
1,212,625	-		Sama_1000	0.62	-1.2
1,212,625	-		Sama_1000	0.62	-0.5
1,212,625	-		Sama_1000	0.62	+0.1
1,212,625	-		Sama_1000	0.62	-1.8
1,212,625	-		Sama_1000	0.62	+0.7
1,212,625	-		Sama_1000	0.62	-0.5
1,212,625	-		Sama_1000	0.62	+1.9
1,212,625	-		Sama_1000	0.62	-0.5
1,212,656	+		Sama_1000	0.64	-0.3
1,212,657	-		Sama_1000	0.65	+1.9
1,212,767	-		Sama_1000	0.75	-1.6