Experiment: Lomefloxacin 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0410 and Sama_0411 are separated by 85 nucleotides Sama_0411 and Sama_0412 are separated by 437 nucleotides
Sama_0410: Sama_0410 - ornithine decarboxylase (RefSeq), at 506,845 to 508,020
_0410
Sama_0411: Sama_0411 - hypothetical protein (RefSeq), at 508,106 to 508,321
_0411
Sama_0412: Sama_0412 - Uridine phosphorylase (EC 2.4.2.3) <small>(from data)</small>, at 508,759 to 509,517
_0412
Position (kb) 508
509 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 507.109 kb on - strand, within Sama_0410 at 507.190 kb on + strand, within Sama_0410 at 507.190 kb on + strand, within Sama_0410 at 507.191 kb on - strand, within Sama_0410 at 507.267 kb on + strand, within Sama_0410 at 507.267 kb on + strand, within Sama_0410 at 507.268 kb on - strand, within Sama_0410 at 507.268 kb on - strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.274 kb on + strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.275 kb on - strand, within Sama_0410 at 507.282 kb on + strand, within Sama_0410 at 507.355 kb on + strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.356 kb on - strand, within Sama_0410 at 507.397 kb on + strand, within Sama_0410 at 507.398 kb on - strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.404 kb on + strand, within Sama_0410 at 507.405 kb on - strand, within Sama_0410 at 507.405 kb on - strand, within Sama_0410 at 507.462 kb on + strand, within Sama_0410 at 507.473 kb on + strand, within Sama_0410 at 507.474 kb on - strand, within Sama_0410 at 507.505 kb on - strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.522 kb on + strand, within Sama_0410 at 507.523 kb on - strand, within Sama_0410 at 507.523 kb on - strand, within Sama_0410 at 507.550 kb on + strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.551 kb on - strand, within Sama_0410 at 507.555 kb on - strand, within Sama_0410 at 507.580 kb on + strand, within Sama_0410 at 507.580 kb on + strand, within Sama_0410 at 507.699 kb on - strand, within Sama_0410 at 507.699 kb on - strand, within Sama_0410 at 507.702 kb on + strand, within Sama_0410 at 507.702 kb on + strand, within Sama_0410 at 507.703 kb on - strand, within Sama_0410 at 507.703 kb on - strand, within Sama_0410 at 507.711 kb on + strand, within Sama_0410 at 507.712 kb on - strand, within Sama_0410 at 507.740 kb on + strand, within Sama_0410 at 507.740 kb on + strand, within Sama_0410 at 507.742 kb on + strand, within Sama_0410 at 507.742 kb on + strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.743 kb on - strand, within Sama_0410 at 507.799 kb on + strand, within Sama_0410 at 507.799 kb on + strand, within Sama_0410 at 507.800 kb on - strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.880 kb on + strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.881 kb on - strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.889 kb on + strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.890 kb on - strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.895 kb on + strand, within Sama_0410 at 507.956 kb on - strand at 507.967 kb on + strand at 507.968 kb on - strand at 508.009 kb on + strand at 508.009 kb on + strand at 508.009 kb on + strand at 508.010 kb on - strand at 508.010 kb on - strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.012 kb on + strand at 508.013 kb on - strand at 508.018 kb on + strand at 508.042 kb on + strand at 508.042 kb on + strand at 508.042 kb on + strand at 508.043 kb on - strand at 508.043 kb on - strand at 508.045 kb on + strand at 508.116 kb on + strand at 508.116 kb on + strand at 508.117 kb on - strand at 508.178 kb on + strand, within Sama_0411 at 508.224 kb on - strand, within Sama_0411 at 508.224 kb on - strand, within Sama_0411 at 508.262 kb on + strand, within Sama_0411 at 508.286 kb on + strand, within Sama_0411 at 508.294 kb on + strand, within Sama_0411 at 508.323 kb on + strand at 508.323 kb on + strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.324 kb on - strand at 508.369 kb on + strand at 508.370 kb on - strand at 508.407 kb on + strand at 508.450 kb on - strand at 508.452 kb on + strand at 508.453 kb on - strand at 508.468 kb on + strand at 508.474 kb on - strand at 508.474 kb on - strand at 508.520 kb on + strand at 508.537 kb on + strand at 508.537 kb on + strand at 508.537 kb on + strand at 508.538 kb on - strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.542 kb on + strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.543 kb on - strand at 508.545 kb on + strand at 508.553 kb on - strand at 508.553 kb on - strand at 508.553 kb on - strand at 508.577 kb on + strand at 508.577 kb on + strand at 508.593 kb on + strand at 508.593 kb on + strand at 508.593 kb on + strand at 508.594 kb on - strand at 508.594 kb on - strand at 508.610 kb on + strand at 508.616 kb on + strand at 508.616 kb on + strand at 508.617 kb on - strand at 508.622 kb on + strand at 508.622 kb on + strand at 508.622 kb on + strand at 508.623 kb on - strand at 508.623 kb on - strand at 508.623 kb on - strand at 508.638 kb on - strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.699 kb on + strand at 508.700 kb on - strand at 508.700 kb on - strand at 508.702 kb on + strand at 508.703 kb on - strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.707 kb on + strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.708 kb on - strand at 508.723 kb on - strand at 508.734 kb on - strand at 508.769 kb on + strand at 508.769 kb on + strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.770 kb on - strand at 508.851 kb on + strand, within Sama_0412 at 508.851 kb on + strand, within Sama_0412 at 508.852 kb on - strand, within Sama_0412 at 508.869 kb on + strand, within Sama_0412 at 508.870 kb on - strand, within Sama_0412 at 508.903 kb on - strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.909 kb on + strand, within Sama_0412 at 508.910 kb on - strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.918 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.977 kb on + strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 508.978 kb on - strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.063 kb on + strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.064 kb on - strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.160 kb on + strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.161 kb on - strand, within Sama_0412 at 509.232 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.239 kb on + strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.240 kb on - strand, within Sama_0412 at 509.267 kb on + strand, within Sama_0412 at 509.267 kb on + strand, within Sama_0412 at 509.268 kb on - strand, within Sama_0412 at 509.268 kb on - strand, within Sama_0412
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.000390625 mM remove 507,109 - Sama_0410 0.22 -1.7 507,190 + Sama_0410 0.29 -0.7 507,190 + Sama_0410 0.29 -2.3 507,191 - Sama_0410 0.29 -0.9 507,267 + Sama_0410 0.36 -2.7 507,267 + Sama_0410 0.36 +0.7 507,268 - Sama_0410 0.36 -0.9 507,268 - Sama_0410 0.36 -0.4 507,274 + Sama_0410 0.36 +0.3 507,274 + Sama_0410 0.36 -1.7 507,274 + Sama_0410 0.36 -1.5 507,275 - Sama_0410 0.37 -0.9 507,275 - Sama_0410 0.37 +0.1 507,275 - Sama_0410 0.37 -1.3 507,275 - Sama_0410 0.37 -0.3 507,275 - Sama_0410 0.37 -0.2 507,275 - Sama_0410 0.37 -0.5 507,275 - Sama_0410 0.37 -0.3 507,275 - Sama_0410 0.37 +0.3 507,275 - Sama_0410 0.37 -2.6 507,275 - Sama_0410 0.37 +0.5 507,275 - Sama_0410 0.37 -1.4 507,275 - Sama_0410 0.37 -0.9 507,275 - Sama_0410 0.37 -1.1 507,282 + Sama_0410 0.37 -0.8 507,355 + Sama_0410 0.43 -1.1 507,356 - Sama_0410 0.43 -1.3 507,356 - Sama_0410 0.43 -1.1 507,356 - Sama_0410 0.43 -1.2 507,397 + Sama_0410 0.47 -0.8 507,398 - Sama_0410 0.47 +1.1 507,404 + Sama_0410 0.48 -2.3 507,404 + Sama_0410 0.48 +1.7 507,404 + Sama_0410 0.48 -1.3 507,404 + Sama_0410 0.48 -0.0 507,405 - Sama_0410 0.48 -1.5 507,405 - Sama_0410 0.48 -0.8 507,462 + Sama_0410 0.52 -0.9 507,473 + Sama_0410 0.53 -1.4 507,474 - Sama_0410 0.53 -1.3 507,505 - Sama_0410 0.56 -0.6 507,522 + Sama_0410 0.58 -1.1 507,522 + Sama_0410 0.58 -0.5 507,522 + Sama_0410 0.58 -3.0 507,523 - Sama_0410 0.58 -0.9 507,523 - Sama_0410 0.58 -0.7 507,550 + Sama_0410 0.60 -0.1 507,551 - Sama_0410 0.60 -1.1 507,551 - Sama_0410 0.60 -0.6 507,551 - Sama_0410 0.60 -2.2 507,551 - Sama_0410 0.60 -1.3 507,551 - Sama_0410 0.60 -1.5 507,551 - Sama_0410 0.60 -0.2 507,555 - Sama_0410 0.60 -0.8 507,580 + Sama_0410 0.62 -0.6 507,580 + Sama_0410 0.62 -0.7 507,699 - Sama_0410 0.73 -1.1 507,699 - Sama_0410 0.73 -1.0 507,702 + Sama_0410 0.73 -1.7 507,702 + Sama_0410 0.73 -1.9 507,703 - Sama_0410 0.73 -0.3 507,703 - Sama_0410 0.73 -1.9 507,711 + Sama_0410 0.74 -0.4 507,712 - Sama_0410 0.74 -2.0 507,740 + Sama_0410 0.76 -0.5 507,740 + Sama_0410 0.76 +0.7 507,742 + Sama_0410 0.76 -1.2 507,742 + Sama_0410 0.76 -0.6 507,743 - Sama_0410 0.76 -0.1 507,743 - Sama_0410 0.76 +0.1 507,743 - Sama_0410 0.76 -0.1 507,743 - Sama_0410 0.76 -2.2 507,743 - Sama_0410 0.76 -0.6 507,799 + Sama_0410 0.81 -0.3 507,799 + Sama_0410 0.81 -0.6 507,800 - Sama_0410 0.81 -2.2 507,880 + Sama_0410 0.88 +0.4 507,880 + Sama_0410 0.88 -0.1 507,880 + Sama_0410 0.88 -2.2 507,880 + Sama_0410 0.88 -1.4 507,880 + Sama_0410 0.88 -1.3 507,880 + Sama_0410 0.88 -1.3 507,880 + Sama_0410 0.88 -1.1 507,880 + Sama_0410 0.88 -1.4 507,880 + Sama_0410 0.88 -0.6 507,880 + Sama_0410 0.88 -1.6 507,880 + Sama_0410 0.88 +0.0 507,881 - Sama_0410 0.88 -0.6 507,881 - Sama_0410 0.88 -2.7 507,881 - Sama_0410 0.88 +0.0 507,881 - Sama_0410 0.88 +1.4 507,881 - Sama_0410 0.88 -1.6 507,881 - Sama_0410 0.88 +1.0 507,881 - Sama_0410 0.88 -1.2 507,881 - Sama_0410 0.88 +0.3 507,881 - Sama_0410 0.88 -1.2 507,889 + Sama_0410 0.89 -1.5 507,889 + Sama_0410 0.89 +0.5 507,889 + Sama_0410 0.89 -0.6 507,889 + Sama_0410 0.89 -1.0 507,889 + Sama_0410 0.89 -0.2 507,890 - Sama_0410 0.89 +0.3 507,890 - Sama_0410 0.89 -1.9 507,890 - Sama_0410 0.89 -0.5 507,890 - Sama_0410 0.89 -1.3 507,890 - Sama_0410 0.89 +0.2 507,890 - Sama_0410 0.89 -1.1 507,890 - Sama_0410 0.89 -2.2 507,890 - Sama_0410 0.89 -0.1 507,895 + Sama_0410 0.89 -1.1 507,895 + Sama_0410 0.89 -1.7 507,895 + Sama_0410 0.89 -0.4 507,895 + Sama_0410 0.89 -2.1 507,956 - +0.7 507,967 + -0.2 507,968 - +0.4 508,009 + -0.3 508,009 + -0.6 508,009 + -1.4 508,010 - -0.5 508,010 - -1.6 508,012 + -0.6 508,012 + +0.1 508,012 + -1.6 508,012 + -0.4 508,013 - -1.5 508,018 + -1.5 508,042 + -2.7 508,042 + -0.2 508,042 + -1.6 508,043 - -0.2 508,043 - -2.5 508,045 + -2.3 508,116 + -0.7 508,116 + -0.8 508,117 - +0.7 508,178 + Sama_0411 0.33 -1.8 508,224 - Sama_0411 0.55 -1.0 508,224 - Sama_0411 0.55 -1.2 508,262 + Sama_0411 0.72 -1.6 508,286 + Sama_0411 0.83 -1.5 508,294 + Sama_0411 0.87 -2.1 508,323 + +0.3 508,323 + -0.8 508,324 - -2.6 508,324 - -0.2 508,324 - +1.2 508,324 - -0.9 508,324 - +0.7 508,324 - -1.2 508,369 + -1.0 508,370 - -1.6 508,407 + -1.4 508,450 - -0.9 508,452 + -2.6 508,453 - -0.2 508,468 + -1.3 508,474 - -0.6 508,474 - -0.7 508,520 + -2.1 508,537 + -0.3 508,537 + +1.7 508,537 + -1.6 508,538 - -0.5 508,542 + -0.6 508,542 + -1.2 508,542 + -0.9 508,542 + -1.4 508,542 + -1.2 508,542 + -1.0 508,542 + -3.0 508,543 - -1.6 508,543 - +0.7 508,543 - -0.6 508,543 - -0.4 508,543 - +0.1 508,543 - -0.7 508,545 + +0.1 508,553 - -2.0 508,553 - -0.6 508,553 - -1.1 508,577 + -0.1 508,577 + -0.9 508,593 + +0.5 508,593 + -0.5 508,593 + -0.3 508,594 - +1.1 508,594 - -1.2 508,610 + +0.2 508,616 + -1.5 508,616 + -1.0 508,617 - -2.6 508,622 + -1.8 508,622 + -1.7 508,622 + -0.4 508,623 - -1.7 508,623 - -0.5 508,623 - -2.3 508,638 - +0.3 508,699 + -0.9 508,699 + -1.3 508,699 + +0.4 508,699 + -2.2 508,700 - -1.1 508,700 - -0.7 508,702 + +0.0 508,703 - -0.7 508,707 + -0.2 508,707 + -2.3 508,707 + -0.1 508,707 + -1.7 508,708 - -2.4 508,708 - -0.3 508,708 - -2.4 508,708 - +0.7 508,723 - -0.3 508,734 - -1.5 508,769 + -1.4 508,769 + -1.0 508,770 - -0.4 508,770 - -0.4 508,770 - +0.1 508,770 - -0.1 508,851 + Sama_0412 0.12 -0.1 508,851 + Sama_0412 0.12 -3.0 508,852 - Sama_0412 0.12 -1.1 508,869 + Sama_0412 0.14 -1.1 508,870 - Sama_0412 0.15 -0.9 508,903 - Sama_0412 0.19 +0.3 508,909 + Sama_0412 0.20 -1.3 508,909 + Sama_0412 0.20 -0.2 508,909 + Sama_0412 0.20 -0.1 508,909 + Sama_0412 0.20 -1.9 508,910 - Sama_0412 0.20 -0.4 508,918 + Sama_0412 0.21 -1.9 508,918 + Sama_0412 0.21 +0.4 508,918 + Sama_0412 0.21 +0.9 508,977 + Sama_0412 0.29 -1.4 508,977 + Sama_0412 0.29 +1.3 508,977 + Sama_0412 0.29 -0.4 508,978 - Sama_0412 0.29 -1.1 508,978 - Sama_0412 0.29 -2.7 508,978 - Sama_0412 0.29 -1.3 508,978 - Sama_0412 0.29 -0.7 508,978 - Sama_0412 0.29 -0.6 509,063 + Sama_0412 0.40 +0.4 509,063 + Sama_0412 0.40 -1.2 509,063 + Sama_0412 0.40 -0.4 509,064 - Sama_0412 0.40 -0.3 509,064 - Sama_0412 0.40 +0.7 509,064 - Sama_0412 0.40 -0.3 509,064 - Sama_0412 0.40 +1.6 509,064 - Sama_0412 0.40 -0.0 509,064 - Sama_0412 0.40 +1.7 509,064 - Sama_0412 0.40 -0.4 509,160 + Sama_0412 0.53 -1.1 509,160 + Sama_0412 0.53 -1.4 509,160 + Sama_0412 0.53 -2.9 509,160 + Sama_0412 0.53 -0.4 509,161 - Sama_0412 0.53 -0.1 509,161 - Sama_0412 0.53 -1.0 509,161 - Sama_0412 0.53 -0.9 509,232 + Sama_0412 0.62 -2.6 509,239 + Sama_0412 0.63 -0.5 509,239 + Sama_0412 0.63 -1.0 509,239 + Sama_0412 0.63 +0.2 509,240 - Sama_0412 0.63 -2.0 509,240 - Sama_0412 0.63 -0.3 509,240 - Sama_0412 0.63 -0.4 509,240 - Sama_0412 0.63 -2.0 509,267 + Sama_0412 0.67 -0.4 509,267 + Sama_0412 0.67 -0.3 509,268 - Sama_0412 0.67 -0.2 509,268 - Sama_0412 0.67 -0.6
Or see this region's nucleotide sequence