Experiment: Lomefloxacin 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0177 and Sama_0178 are separated by 1 nucleotides Sama_0178 and Sama_0179 are separated by 19 nucleotides Sama_0179 and Sama_0180 are separated by 41 nucleotides Sama_0180 and Sama_0181 are separated by 61 nucleotides
Sama_0177: Sama_0177 - general secretion pathway protein L (RefSeq), at 206,384 to 207,580
_0177
Sama_0178: Sama_0178 - general secretion pathway protein M (RefSeq), at 207,582 to 208,058
_0178
Sama_0179: Sama_0179 - general secretion pathway protein N (RefSeq), at 208,078 to 208,833
_0179
Sama_0180: Sama_0180 - hypothetical protein (RefSeq), at 208,875 to 209,603
_0180
Sama_0181: Sama_0181 - hypothetical protein (RefSeq), at 209,665 to 210,438
_0181
Position (kb) 208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 207.087 kb on - strand, within Sama_0177 at 207.309 kb on + strand, within Sama_0177 at 207.588 kb on - strand at 207.588 kb on - strand at 207.653 kb on + strand, within Sama_0178 at 207.911 kb on - strand, within Sama_0178 at 208.040 kb on + strand at 208.041 kb on - strand at 208.072 kb on + strand at 208.112 kb on + strand at 208.119 kb on - strand at 208.196 kb on + strand, within Sama_0179 at 208.203 kb on + strand, within Sama_0179 at 208.203 kb on + strand, within Sama_0179 at 208.263 kb on + strand, within Sama_0179 at 208.263 kb on + strand, within Sama_0179 at 208.273 kb on - strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.274 kb on + strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.275 kb on - strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.284 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.398 kb on + strand, within Sama_0179 at 208.399 kb on - strand, within Sama_0179 at 208.399 kb on - strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.403 kb on + strand, within Sama_0179 at 208.404 kb on - strand, within Sama_0179 at 208.404 kb on - strand, within Sama_0179 at 208.485 kb on - strand, within Sama_0179 at 208.492 kb on + strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.493 kb on - strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.511 kb on + strand, within Sama_0179 at 208.512 kb on - strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.535 kb on + strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.536 kb on - strand, within Sama_0179 at 208.539 kb on + strand, within Sama_0179 at 208.558 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.577 kb on - strand, within Sama_0179 at 208.647 kb on + strand, within Sama_0179 at 208.648 kb on - strand, within Sama_0179 at 208.713 kb on + strand, within Sama_0179 at 208.746 kb on + strand, within Sama_0179 at 208.746 kb on + strand, within Sama_0179 at 208.792 kb on + strand at 208.792 kb on + strand at 208.792 kb on + strand at 208.792 kb on + strand at 208.795 kb on + strand at 208.795 kb on + strand at 208.874 kb on - strand at 208.874 kb on - strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.886 kb on + strand at 208.887 kb on - strand at 208.887 kb on - strand at 208.887 kb on - strand at 208.919 kb on + strand at 208.919 kb on + strand at 208.920 kb on - strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.926 kb on + strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.927 kb on - strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.930 kb on + strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.931 kb on - strand at 208.993 kb on - strand, within Sama_0180 at 208.993 kb on - strand, within Sama_0180 at 208.993 kb on - strand, within Sama_0180 at 209.032 kb on + strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.033 kb on - strand, within Sama_0180 at 209.052 kb on + strand, within Sama_0180 at 209.087 kb on + strand, within Sama_0180 at 209.087 kb on + strand, within Sama_0180 at 209.088 kb on - strand, within Sama_0180 at 209.104 kb on + strand, within Sama_0180 at 209.104 kb on + strand, within Sama_0180 at 209.105 kb on - strand, within Sama_0180 at 209.162 kb on + strand, within Sama_0180 at 209.172 kb on - strand, within Sama_0180 at 209.183 kb on + strand, within Sama_0180 at 209.183 kb on + strand, within Sama_0180 at 209.184 kb on - strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.234 kb on + strand, within Sama_0180 at 209.235 kb on - strand, within Sama_0180 at 209.235 kb on - strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.236 kb on + strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.237 kb on - strand, within Sama_0180 at 209.311 kb on + strand, within Sama_0180 at 209.325 kb on + strand, within Sama_0180 at 209.325 kb on + strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.326 kb on - strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.390 kb on + strand, within Sama_0180 at 209.391 kb on - strand, within Sama_0180 at 209.469 kb on + strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.470 kb on - strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.508 kb on + strand, within Sama_0180 at 209.509 kb on - strand, within Sama_0180 at 209.509 kb on - strand, within Sama_0180 at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.583 kb on + strand at 209.604 kb on - strand at 209.616 kb on + strand at 209.616 kb on + strand at 209.616 kb on + strand at 209.617 kb on - strand at 209.617 kb on - strand at 209.617 kb on - strand at 209.630 kb on + strand at 209.631 kb on - strand at 209.631 kb on - strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.632 kb on + strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.633 kb on - strand at 209.680 kb on + strand at 209.680 kb on + strand at 209.680 kb on + strand at 209.681 kb on - strand at 209.681 kb on - strand at 209.681 kb on - strand at 209.701 kb on + strand at 209.701 kb on + strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.702 kb on - strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.729 kb on + strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.730 kb on - strand at 209.746 kb on + strand, within Sama_0181 at 209.746 kb on + strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.747 kb on - strand, within Sama_0181 at 209.831 kb on + strand, within Sama_0181
Per-strain Table
Position Strand Gene LocusTag Fraction Lomefloxacin 0.000390625 mM remove 207,087 - Sama_0177 0.59 -0.6 207,309 + Sama_0177 0.77 -1.0 207,588 - -3.3 207,588 - -1.0 207,653 + Sama_0178 0.15 -1.4 207,911 - Sama_0178 0.69 -0.0 208,040 + -0.0 208,041 - -1.0 208,072 + -0.9 208,112 + -1.6 208,119 - -1.0 208,196 + Sama_0179 0.16 -1.0 208,203 + Sama_0179 0.17 -2.6 208,203 + Sama_0179 0.17 +1.0 208,263 + Sama_0179 0.24 -0.3 208,263 + Sama_0179 0.24 -1.4 208,273 - Sama_0179 0.26 -1.6 208,274 + Sama_0179 0.26 -1.5 208,274 + Sama_0179 0.26 -1.6 208,274 + Sama_0179 0.26 +1.0 208,274 + Sama_0179 0.26 -1.0 208,274 + Sama_0179 0.26 -1.0 208,274 + Sama_0179 0.26 -1.6 208,274 + Sama_0179 0.26 +0.4 208,274 + Sama_0179 0.26 -1.9 208,274 + Sama_0179 0.26 +1.0 208,274 + Sama_0179 0.26 -1.0 208,274 + Sama_0179 0.26 +1.0 208,274 + Sama_0179 0.26 -1.6 208,275 - Sama_0179 0.26 -1.4 208,275 - Sama_0179 0.26 -0.6 208,275 - Sama_0179 0.26 -1.4 208,275 - Sama_0179 0.26 -0.6 208,275 - Sama_0179 0.26 -1.6 208,275 - Sama_0179 0.26 -0.0 208,275 - Sama_0179 0.26 -1.6 208,275 - Sama_0179 0.26 -0.6 208,275 - Sama_0179 0.26 -1.0 208,275 - Sama_0179 0.26 -1.4 208,275 - Sama_0179 0.26 -1.4 208,275 - Sama_0179 0.26 -1.0 208,284 + Sama_0179 0.27 -1.4 208,284 + Sama_0179 0.27 -1.6 208,284 + Sama_0179 0.27 -0.6 208,284 + Sama_0179 0.27 +2.0 208,284 + Sama_0179 0.27 -0.6 208,398 + Sama_0179 0.42 -1.5 208,398 + Sama_0179 0.42 -1.6 208,398 + Sama_0179 0.42 -2.0 208,399 - Sama_0179 0.42 -1.8 208,399 - Sama_0179 0.42 -0.6 208,403 + Sama_0179 0.43 -0.9 208,403 + Sama_0179 0.43 -0.2 208,403 + Sama_0179 0.43 -1.5 208,404 - Sama_0179 0.43 -0.6 208,404 - Sama_0179 0.43 -0.5 208,485 - Sama_0179 0.54 -1.7 208,492 + Sama_0179 0.55 -0.8 208,493 - Sama_0179 0.55 -1.6 208,493 - Sama_0179 0.55 +0.1 208,493 - Sama_0179 0.55 -2.6 208,511 + Sama_0179 0.57 -0.3 208,511 + Sama_0179 0.57 -0.2 208,511 + Sama_0179 0.57 -1.7 208,512 - Sama_0179 0.57 -0.9 208,535 + Sama_0179 0.60 -1.6 208,535 + Sama_0179 0.60 -0.3 208,535 + Sama_0179 0.60 +2.0 208,535 + Sama_0179 0.60 -0.6 208,536 - Sama_0179 0.61 -1.6 208,536 - Sama_0179 0.61 -0.9 208,536 - Sama_0179 0.61 -2.2 208,539 + Sama_0179 0.61 +0.1 208,558 - Sama_0179 0.63 -0.8 208,577 - Sama_0179 0.66 -0.7 208,577 - Sama_0179 0.66 -1.6 208,577 - Sama_0179 0.66 -2.2 208,577 - Sama_0179 0.66 +0.4 208,647 + Sama_0179 0.75 -1.5 208,648 - Sama_0179 0.75 -1.9 208,713 + Sama_0179 0.84 -1.6 208,746 + Sama_0179 0.88 -2.4 208,746 + Sama_0179 0.88 -0.1 208,792 + -1.6 208,792 + +0.3 208,792 + -2.0 208,792 + -0.9 208,795 + -1.0 208,795 + +1.0 208,874 - -2.7 208,874 - -1.0 208,886 + -3.0 208,886 + -1.2 208,886 + -0.2 208,886 + -1.5 208,886 + -0.0 208,886 + -2.4 208,886 + -1.2 208,886 + -0.9 208,886 + -0.3 208,886 + -0.6 208,886 + -1.9 208,886 + -1.9 208,886 + -1.7 208,887 - -2.9 208,887 - -1.9 208,887 - +0.3 208,919 + -0.5 208,919 + -0.5 208,920 - -1.7 208,926 + +0.2 208,926 + +0.5 208,926 + -0.9 208,926 + -1.0 208,926 + -2.3 208,926 + -2.4 208,927 - -0.3 208,927 - -0.6 208,927 - -1.6 208,927 - -3.4 208,927 - -0.8 208,927 - -0.2 208,927 - +0.3 208,927 - -0.4 208,927 - -2.1 208,927 - -2.0 208,927 - -1.4 208,927 - +0.6 208,927 - -0.9 208,927 - -1.2 208,930 + -1.5 208,930 + -2.2 208,930 + -0.0 208,930 + -0.5 208,930 + +0.0 208,930 + -2.2 208,930 + -0.9 208,930 + -1.9 208,930 + -1.9 208,930 + -2.4 208,930 + -2.2 208,931 - -1.5 208,931 - -1.4 208,931 - -0.6 208,931 - -2.2 208,993 - Sama_0180 0.16 -1.2 208,993 - Sama_0180 0.16 -0.5 208,993 - Sama_0180 0.16 -0.0 209,032 + Sama_0180 0.22 -1.7 209,033 - Sama_0180 0.22 +0.4 209,033 - Sama_0180 0.22 +0.4 209,033 - Sama_0180 0.22 -0.7 209,052 + Sama_0180 0.24 -1.2 209,087 + Sama_0180 0.29 -0.5 209,087 + Sama_0180 0.29 +0.4 209,088 - Sama_0180 0.29 -1.0 209,104 + Sama_0180 0.31 -2.0 209,104 + Sama_0180 0.31 -1.0 209,105 - Sama_0180 0.32 -1.0 209,162 + Sama_0180 0.39 -0.0 209,172 - Sama_0180 0.41 -3.0 209,183 + Sama_0180 0.42 -0.3 209,183 + Sama_0180 0.42 -1.2 209,184 - Sama_0180 0.42 -2.8 209,234 + Sama_0180 0.49 -1.0 209,234 + Sama_0180 0.49 -1.3 209,234 + Sama_0180 0.49 +0.5 209,234 + Sama_0180 0.49 -1.4 209,234 + Sama_0180 0.49 -1.1 209,234 + Sama_0180 0.49 -2.0 209,234 + Sama_0180 0.49 -2.5 209,234 + Sama_0180 0.49 +1.4 209,235 - Sama_0180 0.49 -0.4 209,235 - Sama_0180 0.49 -0.9 209,236 + Sama_0180 0.50 -0.4 209,236 + Sama_0180 0.50 -1.9 209,236 + Sama_0180 0.50 -0.8 209,236 + Sama_0180 0.50 -0.3 209,236 + Sama_0180 0.50 -1.6 209,236 + Sama_0180 0.50 -2.0 209,236 + Sama_0180 0.50 -2.7 209,236 + Sama_0180 0.50 -0.8 209,236 + Sama_0180 0.50 +0.5 209,237 - Sama_0180 0.50 -1.0 209,237 - Sama_0180 0.50 -1.6 209,237 - Sama_0180 0.50 -0.8 209,237 - Sama_0180 0.50 -0.5 209,237 - Sama_0180 0.50 -1.4 209,237 - Sama_0180 0.50 -1.7 209,237 - Sama_0180 0.50 -1.2 209,237 - Sama_0180 0.50 -0.5 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 -2.6 209,237 - Sama_0180 0.50 -0.4 209,237 - Sama_0180 0.50 -0.9 209,237 - Sama_0180 0.50 -1.9 209,237 - Sama_0180 0.50 -0.5 209,237 - Sama_0180 0.50 -1.2 209,237 - Sama_0180 0.50 -1.5 209,237 - Sama_0180 0.50 -1.0 209,237 - Sama_0180 0.50 +1.0 209,237 - Sama_0180 0.50 +0.0 209,237 - Sama_0180 0.50 -1.0 209,237 - Sama_0180 0.50 -0.6 209,311 + Sama_0180 0.60 -1.3 209,325 + Sama_0180 0.62 -1.5 209,325 + Sama_0180 0.62 -0.8 209,326 - Sama_0180 0.62 -0.7 209,326 - Sama_0180 0.62 -2.5 209,326 - Sama_0180 0.62 -1.4 209,390 + Sama_0180 0.71 -0.9 209,390 + Sama_0180 0.71 -1.6 209,390 + Sama_0180 0.71 -0.4 209,391 - Sama_0180 0.71 -1.5 209,469 + Sama_0180 0.81 +0.3 209,470 - Sama_0180 0.82 +1.0 209,470 - Sama_0180 0.82 -1.1 209,470 - Sama_0180 0.82 -2.2 209,508 + Sama_0180 0.87 -1.2 209,508 + Sama_0180 0.87 -0.7 209,508 + Sama_0180 0.87 +0.4 209,508 + Sama_0180 0.87 -2.2 209,508 + Sama_0180 0.87 -3.6 209,509 - Sama_0180 0.87 -0.5 209,509 - Sama_0180 0.87 -0.4 209,583 + -0.7 209,583 + -0.5 209,583 + -1.3 209,583 + -2.0 209,583 + -0.3 209,604 - +0.2 209,616 + -0.0 209,616 + -0.9 209,616 + -2.5 209,617 - -0.7 209,617 - -0.9 209,617 - +0.4 209,630 + -1.6 209,631 - -0.3 209,631 - -0.9 209,632 + -1.3 209,632 + -0.7 209,632 + -2.0 209,632 + -0.6 209,632 + -1.4 209,633 - -1.2 209,633 - -0.5 209,633 - +0.5 209,633 - -0.9 209,633 - -3.4 209,633 - -1.0 209,633 - -2.0 209,633 - -1.9 209,633 - -0.8 209,680 + -1.3 209,680 + -0.2 209,680 + -1.9 209,681 - -0.5 209,681 - -1.2 209,681 - -1.3 209,701 + -0.9 209,701 + -0.9 209,702 - -1.3 209,702 - -0.4 209,702 - -0.0 209,702 - -0.6 209,702 - -1.1 209,729 + -2.9 209,729 + -1.1 209,729 + -1.3 209,729 + -0.7 209,729 + -1.0 209,729 + -0.3 209,730 - +1.0 209,730 - -0.6 209,730 - -1.4 209,730 - -0.3 209,746 + Sama_0181 0.10 -1.8 209,746 + Sama_0181 0.10 -0.0 209,747 - Sama_0181 0.11 -0.4 209,747 - Sama_0181 0.11 -1.2 209,747 - Sama_0181 0.11 -2.5 209,747 - Sama_0181 0.11 -2.2 209,831 + Sama_0181 0.21 -0.4
Or see this region's nucleotide sequence