Strain Fitness in Shewanella oneidensis MR-1 around SOA0085

Experiment: A22 0.003 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO_A0084 and SO_A0180 are separated by 81 nucleotidesSO_A0180 and SOA0085 are separated by 336 nucleotidesSOA0085 and SOA0086 are separated by 83 nucleotidesSOA0086 and SOA0087 are separated by 169 nucleotides SO_A0084: SO_A0084 - no description, at 62,973 to 64,960 _A0084 SO_A0180: SO_A0180 - hypothetical protein (NCBI), at 65,042 to 65,569 _A0180 SOA0085: SOA0085 - ISSod8, transposase (NCBI ptt file), at 65,906 to 66,451 SOA0085 SOA0086: SOA0086 - site-specific recombinase, resolvase family (NCBI ptt file), at 66,535 to 67,125 SOA0086 SOA0087: SOA0087 - conserved hypothetical protein (NCBI ptt file), at 67,295 to 67,555 SOA0087 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.912 kb on - strandat 64.939 kb on + strandat 64.955 kb on - strandat 64.963 kb on - strandat 65.011 kb on + strandat 65.011 kb on + strandat 65.019 kb on - strandat 65.019 kb on - strandat 65.064 kb on + strandat 65.065 kb on - strandat 65.065 kb on - strandat 65.096 kb on - strand, within SO_A0180at 65.125 kb on + strand, within SO_A0180at 65.125 kb on + strand, within SO_A0180at 65.125 kb on + strand, within SO_A0180at 65.132 kb on - strand, within SO_A0180at 65.133 kb on - strand, within SO_A0180at 65.133 kb on - strand, within SO_A0180at 65.133 kb on - strand, within SO_A0180at 65.138 kb on - strand, within SO_A0180at 65.178 kb on + strand, within SO_A0180at 65.179 kb on + strand, within SO_A0180at 65.186 kb on - strand, within SO_A0180at 65.190 kb on + strand, within SO_A0180at 65.204 kb on - strand, within SO_A0180at 65.209 kb on - strand, within SO_A0180at 65.209 kb on - strand, within SO_A0180at 65.221 kb on + strand, within SO_A0180at 65.229 kb on - strand, within SO_A0180at 65.231 kb on + strand, within SO_A0180at 65.257 kb on + strand, within SO_A0180at 65.264 kb on + strand, within SO_A0180at 65.294 kb on + strand, within SO_A0180at 65.294 kb on + strand, within SO_A0180at 65.302 kb on - strand, within SO_A0180at 65.302 kb on - strand, within SO_A0180at 65.309 kb on + strand, within SO_A0180at 65.357 kb on + strand, within SO_A0180at 65.367 kb on + strand, within SO_A0180at 65.375 kb on + strand, within SO_A0180at 65.407 kb on - strand, within SO_A0180at 65.421 kb on + strand, within SO_A0180at 65.421 kb on + strand, within SO_A0180at 65.421 kb on + strand, within SO_A0180at 65.429 kb on - strand, within SO_A0180at 65.451 kb on - strand, within SO_A0180at 65.451 kb on - strand, within SO_A0180at 65.461 kb on - strand, within SO_A0180at 65.461 kb on - strand, within SO_A0180at 65.521 kb on + strandat 65.521 kb on + strandat 65.524 kb on - strandat 65.526 kb on + strandat 65.526 kb on - strandat 65.529 kb on - strandat 65.529 kb on - strandat 65.531 kb on - strandat 65.532 kb on - strandat 65.537 kb on - strandat 65.537 kb on - strandat 65.595 kb on + strandat 65.608 kb on - strandat 65.614 kb on + strandat 65.614 kb on + strandat 65.622 kb on + strandat 65.622 kb on - strandat 65.622 kb on - strandat 65.622 kb on - strandat 65.624 kb on + strandat 65.624 kb on + strandat 65.631 kb on - strandat 65.632 kb on - strandat 65.632 kb on - strandat 65.676 kb on + strandat 65.676 kb on + strandat 65.685 kb on + strandat 65.690 kb on + strandat 66.278 kb on - strand, within SOA0085at 66.511 kb on + strandat 66.542 kb on + strandat 66.564 kb on + strandat 66.605 kb on - strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.608 kb on + strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.616 kb on - strand, within SOA0086at 66.624 kb on - strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.636 kb on + strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.644 kb on - strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.678 kb on + strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.686 kb on - strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.746 kb on + strand, within SOA0086at 66.753 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.754 kb on - strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.756 kb on + strand, within SOA0086at 66.764 kb on - strand, within SOA0086at 66.816 kb on - strand, within SOA0086at 66.822 kb on + strand, within SOA0086at 66.824 kb on + strand, within SOA0086at 66.832 kb on - strand, within SOA0086at 66.847 kb on - strand, within SOA0086at 66.886 kb on + strand, within SOA0086at 66.895 kb on + strand, within SOA0086at 66.895 kb on + strand, within SOA0086at 66.903 kb on - strand, within SOA0086at 66.907 kb on + strand, within SOA0086at 66.907 kb on + strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.915 kb on - strand, within SOA0086at 66.948 kb on - strand, within SOA0086at 66.949 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.960 kb on - strand, within SOA0086at 66.997 kb on + strand, within SOA0086at 66.999 kb on + strand, within SOA0086at 67.074 kb on - strandat 67.076 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.081 kb on + strandat 67.082 kb on - strandat 67.089 kb on - strandat 67.089 kb on - strandat 67.089 kb on - strandat 67.091 kb on + strandat 67.091 kb on + strandat 67.099 kb on + strandat 67.102 kb on - strandat 67.105 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction A22 0.003 mg/ml
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64,912 - +0.2
64,939 + -0.1
64,955 - -0.5
64,963 - -0.2
65,011 + +0.7
65,011 + -0.6
65,019 - +0.8
65,019 - +1.2
65,064 + +0.0
65,065 - +0.2
65,065 - -0.3
65,096 - SO_A0180 0.10 -0.9
65,125 + SO_A0180 0.16 +0.0
65,125 + SO_A0180 0.16 -0.5
65,125 + SO_A0180 0.16 +0.5
65,132 - SO_A0180 0.17 -0.2
65,133 - SO_A0180 0.17 -1.2
65,133 - SO_A0180 0.17 -0.4
65,133 - SO_A0180 0.17 +0.6
65,138 - SO_A0180 0.18 +0.4
65,178 + SO_A0180 0.26 -0.1
65,179 + SO_A0180 0.26 +0.4
65,186 - SO_A0180 0.27 -0.5
65,190 + SO_A0180 0.28 -0.2
65,204 - SO_A0180 0.31 -0.1
65,209 - SO_A0180 0.32 -0.9
65,209 - SO_A0180 0.32 +0.1
65,221 + SO_A0180 0.34 +0.1
65,229 - SO_A0180 0.35 +0.4
65,231 + SO_A0180 0.36 +0.0
65,257 + SO_A0180 0.41 +0.3
65,264 + SO_A0180 0.42 +0.1
65,294 + SO_A0180 0.48 -0.1
65,294 + SO_A0180 0.48 -1.0
65,302 - SO_A0180 0.49 -1.4
65,302 - SO_A0180 0.49 -1.3
65,309 + SO_A0180 0.51 +0.5
65,357 + SO_A0180 0.60 +0.6
65,367 + SO_A0180 0.62 +0.2
65,375 + SO_A0180 0.63 +1.4
65,407 - SO_A0180 0.69 -0.6
65,421 + SO_A0180 0.72 -0.2
65,421 + SO_A0180 0.72 -0.2
65,421 + SO_A0180 0.72 -0.3
65,429 - SO_A0180 0.73 -0.2
65,451 - SO_A0180 0.77 +0.6
65,451 - SO_A0180 0.77 +0.4
65,461 - SO_A0180 0.79 +1.1
65,461 - SO_A0180 0.79 -0.2
65,521 + +0.1
65,521 + +0.4
65,524 - +0.2
65,526 + +0.4
65,526 - +0.4
65,529 - -0.7
65,529 - +0.8
65,531 - -0.2
65,532 - -0.2
65,537 - -0.0
65,537 - -0.9
65,595 + -0.2
65,608 - +0.0
65,614 + -0.2
65,614 + -0.8
65,622 + -0.2
65,622 - -0.2
65,622 - -0.0
65,622 - +0.1
65,624 + +0.3
65,624 + +0.4
65,631 - -0.3
65,632 - -0.1
65,632 - -0.3
65,676 + -0.5
65,676 + +0.4
65,685 + -0.1
65,690 + -0.2
66,278 - SOA0085 0.68 -0.8
66,511 + -0.9
66,542 + -0.2
66,564 + -0.1
66,605 - SOA0086 0.12 +0.3
66,608 + SOA0086 0.12 -0.1
66,608 + SOA0086 0.12 +1.2
66,608 + SOA0086 0.12 -0.4
66,608 + SOA0086 0.12 -0.9
66,608 + SOA0086 0.12 -0.7
66,616 - SOA0086 0.14 +1.1
66,616 - SOA0086 0.14 +1.0
66,616 - SOA0086 0.14 +0.3
66,616 - SOA0086 0.14 -1.3
66,624 - SOA0086 0.15 -0.3
66,636 + SOA0086 0.17 +0.8
66,636 + SOA0086 0.17 -0.5
66,636 + SOA0086 0.17 +0.6
66,636 + SOA0086 0.17 +0.8
66,636 + SOA0086 0.17 -0.5
66,644 - SOA0086 0.18 -0.2
66,644 - SOA0086 0.18 -0.2
66,644 - SOA0086 0.18 +0.1
66,644 - SOA0086 0.18 -0.2
66,644 - SOA0086 0.18 +0.6
66,644 - SOA0086 0.18 -0.8
66,644 - SOA0086 0.18 -0.1
66,644 - SOA0086 0.18 -1.7
66,678 + SOA0086 0.24 -0.7
66,678 + SOA0086 0.24 +0.8
66,678 + SOA0086 0.24 +0.8
66,678 + SOA0086 0.24 -1.2
66,678 + SOA0086 0.24 -0.9
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 +0.4
66,678 + SOA0086 0.24 +1.1
66,678 + SOA0086 0.24 +0.3
66,678 + SOA0086 0.24 -0.2
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 -0.4
66,678 + SOA0086 0.24 -0.8
66,678 + SOA0086 0.24 +0.9
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 -0.6
66,678 + SOA0086 0.24 -0.7
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 -0.4
66,678 + SOA0086 0.24 -0.2
66,678 + SOA0086 0.24 -0.2
66,678 + SOA0086 0.24 +0.2
66,678 + SOA0086 0.24 +0.4
66,678 + SOA0086 0.24 -0.3
66,678 + SOA0086 0.24 +0.0
66,678 + SOA0086 0.24 -0.4
66,678 + SOA0086 0.24 +0.6
66,678 + SOA0086 0.24 -0.1
66,686 - SOA0086 0.26 +0.5
66,686 - SOA0086 0.26 +0.4
66,686 - SOA0086 0.26 -0.2
66,686 - SOA0086 0.26 -0.2
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 +0.3
66,686 - SOA0086 0.26 +0.2
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 -0.4
66,686 - SOA0086 0.26 -0.5
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 -0.2
66,686 - SOA0086 0.26 +0.3
66,686 - SOA0086 0.26 +0.2
66,686 - SOA0086 0.26 +0.2
66,686 - SOA0086 0.26 +1.2
66,686 - SOA0086 0.26 +0.6
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 -0.1
66,686 - SOA0086 0.26 -0.0
66,686 - SOA0086 0.26 +0.2
66,686 - SOA0086 0.26 -0.2
66,746 + SOA0086 0.36 -0.3
66,746 + SOA0086 0.36 +0.9
66,746 + SOA0086 0.36 +0.3
66,753 - SOA0086 0.37 -0.5
66,754 - SOA0086 0.37 -0.6
66,754 - SOA0086 0.37 -0.3
66,754 - SOA0086 0.37 +0.2
66,754 - SOA0086 0.37 +0.2
66,756 + SOA0086 0.37 -0.5
66,756 + SOA0086 0.37 -0.5
66,756 + SOA0086 0.37 -0.2
66,764 - SOA0086 0.39 +0.1
66,816 - SOA0086 0.48 -0.1
66,822 + SOA0086 0.49 -0.7
66,824 + SOA0086 0.49 +0.1
66,832 - SOA0086 0.50 -0.5
66,847 - SOA0086 0.53 -0.1
66,886 + SOA0086 0.59 -0.4
66,895 + SOA0086 0.61 +0.3
66,895 + SOA0086 0.61 -1.0
66,903 - SOA0086 0.62 -0.8
66,907 + SOA0086 0.63 +0.1
66,907 + SOA0086 0.63 -0.9
66,915 - SOA0086 0.64 +0.4
66,915 - SOA0086 0.64 +0.6
66,915 - SOA0086 0.64 -0.2
66,948 - SOA0086 0.70 +2.0
66,949 - SOA0086 0.70 +0.9
66,960 - SOA0086 0.72 +0.1
66,960 - SOA0086 0.72 -0.2
66,960 - SOA0086 0.72 +0.6
66,997 + SOA0086 0.78 -0.6
66,999 + SOA0086 0.79 -0.1
67,074 - +0.2
67,076 + -0.3
67,081 + -2.6
67,081 + +0.4
67,081 + -0.8
67,081 + +0.2
67,081 + -0.6
67,081 + +0.2
67,082 - +0.3
67,089 - -0.1
67,089 - -0.4
67,089 - -0.7
67,091 + -0.6
67,091 + -0.4
67,099 + +0.1
67,102 - +0.1
67,105 + +0.1

Or see this region's nucleotide sequence