Strain Fitness in Shewanella oneidensis MR-1 around SOA0078

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
60,184	-				-1.0
60,185	-				+0.1
60,185	-				+0.3
60,185	-				-0.1
60,185	-				-1.2
60,288	+				+0.1
60,293	+				-0.7
60,293	+				+0.3
60,301	-				+1.9
60,301	-				+0.2
60,306	-				-0.0
60,334	+				+1.0
60,345	-				+0.0
60,353	+				+1.4
60,359	-				+0.4
60,359	-				-0.6
60,359	-				+0.0
60,361	+				+0.7
60,365	+				+0.7
60,365	+				-1.1
60,369	-				+0.1
60,373	+				-0.6
60,373	+				-0.5
60,373	+				-0.2
60,373	+				-0.1
60,373	+				-0.2
60,373	+				-0.4
60,373	+				+0.1
60,373	+				+0.2
60,373	-				-0.3
60,381	-				-0.1
60,381	-				+0.1
60,400	+				+0.0
60,410	+		SOA0077	0.10	+0.4
60,417	+		SOA0077	0.11	+0.3
60,429	+		SOA0077	0.13	+1.4
60,430	+		SOA0077	0.13	-0.7
60,437	-		SOA0077	0.14	+0.2
60,439	-		SOA0077	0.15	-0.1
60,453	+		SOA0077	0.17	+0.2
60,489	-		SOA0077	0.22	+0.5
60,489	-		SOA0077	0.22	+0.1
60,491	+		SOA0077	0.23	-0.6
60,500	+		SOA0077	0.24	-0.1
60,508	-		SOA0077	0.25	-0.1
60,513	-		SOA0077	0.26	-0.1
60,544	-		SOA0077	0.31	+1.4
60,651	+		SOA0077	0.48	+0.0
60,657	-		SOA0077	0.49	-0.2
60,659	-		SOA0077	0.49	-0.7
60,692	-		SOA0077	0.54	-1.1
60,693	-		SOA0077	0.55	-0.3
60,713	-		SOA0077	0.58	-0.1
60,713	-		SOA0077	0.58	+0.4
60,744	-		SOA0077	0.63	-0.1
60,769	+		SOA0077	0.67	-0.2
60,769	+		SOA0077	0.67	-0.0
60,777	+		SOA0077	0.68	+1.2
60,777	+		SOA0077	0.68	-1.3
60,777	+		SOA0077	0.68	-0.2
60,785	-		SOA0077	0.69	+0.0
60,828	+		SOA0077	0.76	-1.6
60,871	+		SOA0077	0.83	+0.8
60,876	-		SOA0077	0.83	-1.2
60,876	-		SOA0077	0.83	-0.1
60,876	-		SOA0077	0.83	+0.4
60,890	+		SOA0077	0.86	-0.4
60,903	-		SOA0077	0.88	+0.1
60,957	+				-0.6
60,982	+				-1.4
61,027	+				+0.5
61,080	+				+0.3
61,088	-				-0.1
61,088	-				-0.6
61,114	+				-0.1
61,365	-		SOA0078	0.76	-0.4
61,379	+		SOA0078	0.81	-1.4
61,387	-		SOA0078	0.85	+0.0
61,399	+				-0.7
61,433	-				+0.1
61,440	+				+0.1
61,448	-		SOA0079	0.11	-0.2
61,448	-		SOA0079	0.11	-0.1
61,448	-		SOA0079	0.11	-1.1
61,502	+		SOA0079	0.29	+0.2
61,504	+		SOA0079	0.29	-0.2
61,504	+		SOA0079	0.29	-0.2
61,512	-		SOA0079	0.32	-0.3
61,528	-		SOA0079	0.37	+0.1
61,528	-		SOA0079	0.37	+0.6
61,540	+		SOA0079	0.41	+0.5
61,540	+		SOA0079	0.41	-0.4
61,550	+		SOA0079	0.45	-0.6
61,550	+		SOA0079	0.45	+0.5
61,550	+		SOA0079	0.45	+0.6
61,550	+		SOA0079	0.45	-0.4
61,550	+		SOA0079	0.45	-0.1
61,550	+		SOA0079	0.45	+0.8
61,558	-		SOA0079	0.47	-0.5
61,558	-		SOA0079	0.47	-0.3
61,558	-		SOA0079	0.47	+0.1
61,560	+		SOA0079	0.48	-0.3
61,568	-		SOA0079	0.51	-0.0
61,710	+				-0.5
61,712	+				+0.1
61,717	+				-0.4
61,753	+				-0.5
61,755	+				-0.5
61,755	+				-0.0
61,755	+				+1.0
61,755	+				+0.7
61,755	+				-0.7
61,755	+				+0.6
61,755	+				-2.6
61,755	+				-0.1
61,755	+				-0.2
61,761	-				-0.3
61,763	-				-0.5
61,763	-				-0.2
61,763	-				-0.5
61,763	-				+0.5
61,763	-				+0.6
61,763	-				+0.1
61,763	-				-0.0
61,779	+				-0.3
61,787	-				+1.6
61,787	-				+0.4
61,789	+				-0.3
61,797	-				+0.2
61,797	-				+0.0
61,797	-				-0.6
61,797	-				-0.1
61,827	+				+0.2
61,895	+				+0.1
61,937	+				-0.6
61,937	+				+0.3
61,939	+				+2.1
61,939	+				+0.1
61,945	-				-1.6
61,947	+				-0.3
61,947	-				+0.0
61,956	+				-0.0
61,956	+				-0.3
61,961	+				-0.2
62,004	+				+0.2
62,004	+				+0.1
62,004	+				+0.1
62,009	+				-0.0
62,017	-				+0.0
62,017	-				-0.2
62,029	+				+0.4
62,039	+				-0.1
62,039	+				-0.1
62,047	-				-0.5
62,047	-				+0.5
62,048	+				+0.0
62,058	+				+0.4
62,060	+				-0.4
62,079	+				+0.1
62,087	+				+0.8
62,088	-				+0.1
62,095	-				-1.6
62,095	-				+0.6
62,095	-				-0.3
62,095	-				-0.4
62,095	-				+0.6
62,095	-				+0.3
62,097	-				-0.3
62,097	-				+0.5
62,097	-				-1.6
62,163	-		SO_A0080	0.11	-0.7
62,184	+		SO_A0080	0.15	-0.0
62,209	+		SO_A0080	0.20	-0.3
62,216	-		SO_A0080	0.22	-0.0
62,217	-		SO_A0080	0.22	+1.4
62,219	+		SO_A0080	0.22	+0.0
62,221	-		SO_A0080	0.23	-0.0
62,226	-		SO_A0080	0.24	+0.4
62,295	-		SO_A0080	0.38	-0.4
62,322	+		SO_A0080	0.44	-0.4
62,328	+		SO_A0080	0.45	+0.0
62,336	-		SO_A0080	0.47	-0.3
62,375	-		SO_A0080	0.55	+0.6
62,380	-		SO_A0080	0.56	-0.4
62,385	-		SO_A0080	0.57	-0.5
62,390	+		SO_A0080	0.58	-0.1
62,398	-		SO_A0080	0.59	+0.1
62,398	-		SO_A0080	0.59	-0.2
62,410	+		SO_A0080	0.62	+0.3
62,410	+		SO_A0080	0.62	-1.1
62,415	+		SO_A0080	0.63	-1.1
62,418	-		SO_A0080	0.63	+0.3