Strain Fitness in Shewanella oneidensis MR-1 around SO4427

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
4,616,832	+		SO4425	0.79	+0.8
4,616,834	+		SO4425	0.79	-1.4
4,617,088	-				-0.2
4,617,098	-				+2.0
4,617,098	-				-0.6
4,617,126	+				+0.2
4,617,126	+				+0.7
4,617,134	-				-0.3
4,617,179	+				-0.5
4,617,196	-		SO_4426	0.12	+0.1
4,617,241	-		SO_4426	0.19	-0.2
4,617,333	+		SO_4426	0.32	-0.9
4,617,333	+		SO_4426	0.32	+1.1
4,617,333	+		SO_4426	0.32	+0.5
4,617,376	-		SO_4426	0.38	-0.4
4,617,411	+		SO_4426	0.44	+1.0
4,617,508	+		SO_4426	0.58	-0.2
4,617,558	+		SO_4426	0.65	+0.4
4,617,829	+				-0.8
4,617,830	-				+1.4
4,617,862	-				-0.8
4,617,932	-				+0.2
4,617,932	-				-0.5
4,617,958	-		SO4427	0.10	-1.3
4,618,006	-		SO4427	0.14	-0.9
4,618,049	+		SO4427	0.17	-0.9
4,618,184	+		SO4427	0.28	-0.7
4,618,230	+		SO4427	0.32	-0.2
4,618,256	+		SO4427	0.34	-0.9
4,618,413	+		SO4427	0.46	-0.6
4,618,413	+		SO4427	0.46	-0.5
4,618,413	+		SO4427	0.46	-2.9
4,618,604	+		SO4427	0.61	-0.3
4,618,612	-		SO4427	0.62	-0.8
4,618,684	-		SO4427	0.68	-1.3
4,618,758	-		SO4427	0.74	-0.9
4,618,866	+		SO4427	0.82	-0.8
4,618,866	+		SO4427	0.82	-0.3
4,618,874	-		SO4427	0.83	-1.0
4,618,874	-		SO4427	0.83	-0.5
4,618,891	-		SO4427	0.84	-0.6
4,618,943	-		SO4427	0.88	-0.8
4,619,025	-				-0.5
4,619,025	-				-1.2
4,619,134	+				-0.8
4,619,197	+				-0.4
4,619,379	+		SO4428	0.36	-0.6
4,619,427	+		SO4428	0.43	+0.2
4,619,457	+		SO4428	0.47	-0.7
4,619,461	-		SO4428	0.48	-0.7
4,619,539	-		SO4428	0.59	-1.3
4,619,546	+		SO4428	0.60	-1.9
4,619,546	+		SO4428	0.60	-0.7
4,619,546	+		SO4428	0.60	+1.2
4,619,554	-		SO4428	0.62	-0.2
4,619,554	-		SO4428	0.62	-0.4
4,619,555	-		SO4428	0.62	+0.6
4,619,584	+		SO4428	0.66	-0.7
4,619,709	-		SO4428	0.84	-0.5
4,619,780	-				-0.5
4,619,829	+				-1.2
4,619,829	+				-0.9
4,619,829	+				-0.5
4,619,837	-				-0.4
4,619,837	-				-1.0
4,619,837	-				+0.1
4,619,864	+				-0.6
4,619,872	-				-0.7
4,620,046	+		SO4429	0.34	-0.7
4,620,069	+		SO4429	0.39	-1.0
4,620,070	-		SO4429	0.39	+0.3
4,620,070	-		SO4429	0.39	+0.5