Strain Fitness in Shewanella oneidensis MR-1 around SO4088

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
4,240,982	-		SO4087	0.16	-1.8
4,241,174	+		SO4087	0.33	+0.7
4,241,182	-		SO4087	0.34	-0.2
4,241,182	-		SO4087	0.34	-0.1
4,241,209	-		SO4087	0.36	-0.2
4,241,276	+		SO4087	0.42	-0.8
4,241,380	-		SO4087	0.51	-0.2
4,241,543	+		SO4087	0.66	-0.4
4,241,847	-				-0.3
4,241,864	+				-0.8
4,241,864	+				-0.9
4,241,864	+				-0.5
4,241,872	-				-0.9
4,241,990	+				-0.6
4,242,086	-		SO4088	0.12	-0.4
4,242,222	-		SO4088	0.22	-0.6
4,242,350	-		SO4088	0.32	-0.2
4,242,350	-		SO4088	0.32	-0.8
4,242,350	-		SO4088	0.32	-0.8
4,242,350	-		SO4088	0.32	-0.9
4,242,350	-		SO4088	0.32	-0.4
4,242,350	-		SO4088	0.32	-0.2
4,242,366	+		SO4088	0.33	-1.0
4,242,448	+		SO4088	0.39	+0.0
4,242,458	-		SO4088	0.40	-0.4
4,242,458	-		SO4088	0.40	-0.3
4,242,506	+		SO4088	0.44	-0.3
4,242,514	-		SO4088	0.44	-1.3
4,242,514	-		SO4088	0.44	-1.1
4,242,560	+		SO4088	0.48	-0.9
4,242,627	+		SO4088	0.53	-1.0
4,242,648	-		SO4088	0.55	-0.9
4,242,863	+		SO4088	0.71	-0.6
4,242,863	+		SO4088	0.71	+0.3
4,242,864	+		SO4088	0.71	-1.2
4,242,871	-		SO4088	0.72	-1.5
4,242,871	-		SO4088	0.72	-0.6
4,242,871	-		SO4088	0.72	+0.2
4,242,876	-		SO4088	0.72	-0.5
4,242,929	+		SO4088	0.76	-0.8
4,242,990	-		SO4088	0.81	-0.2
4,243,052	+		SO4088	0.85	-0.0
4,243,052	-		SO4088	0.85	-0.6
4,243,128	+				-1.9
4,243,263	-				+0.6
4,243,319	+				-0.2
4,243,577	-		SO4089	0.34	-0.6
4,243,577	-		SO4089	0.34	-0.5
4,243,625	+		SO4089	0.39	-0.6
4,243,715	-		SO4089	0.48	-0.4
4,243,742	+		SO4089	0.51	-0.6
4,243,833	+		SO4089	0.60	-0.1
4,243,942	+		SO4089	0.71	+0.2
4,243,971	-		SO4089	0.74	-0.7
4,243,971	-		SO4089	0.74	-2.0
4,243,971	-		SO4089	0.74	+0.4
4,243,991	+		SO4089	0.76	+0.4
4,244,086	-		SO4089	0.86	-0.3
4,244,140	-				-0.7
4,244,140	-				-1.1
4,244,140	-				+0.5
4,244,140	-				-0.6
4,244,163	+				-1.1
4,244,174	+				-0.3