Strain Fitness in Shewanella oneidensis MR-1 around SO3814

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
3,964,579	-	ppiA	SO3812	0.28	+0.5
3,964,594	+	ppiA	SO3812	0.31	-0.5
3,964,594	+	ppiA	SO3812	0.31	-1.3
3,964,602	-	ppiA	SO3812	0.32	-0.4
3,964,602	-	ppiA	SO3812	0.32	+0.7
3,964,699	+	ppiA	SO3812	0.49	-2.3
3,964,729	+	ppiA	SO3812	0.54	+0.0
3,964,815	+	ppiA	SO3812	0.69	-0.5
3,964,815	+	ppiA	SO3812	0.69	+1.3
3,964,820	+	ppiA	SO3812	0.69	-0.8
3,964,823	-	ppiA	SO3812	0.70	-0.1
3,964,824	-	ppiA	SO3812	0.70	+0.6
3,964,918	-	ppiA	SO3812	0.86	+0.2
3,964,933	+	ppiA	SO3812	0.89	+0.2
3,965,156	+		SO3813	0.28	-0.4
3,965,178	+		SO3813	0.35	+0.4
3,965,178	+		SO3813	0.35	-0.6
3,965,178	+		SO3813	0.35	+0.2
3,965,180	+		SO3813	0.36	+0.0
3,965,186	-		SO3813	0.37	-0.4
3,965,188	-		SO3813	0.38	+0.1
3,965,373	+				-0.5
3,965,388	-				-0.3
3,965,468	+				+0.2
3,965,474	+				+0.3
3,965,482	-				-0.4
3,965,482	-				+0.3
3,965,512	-				-0.6
3,965,571	+				-0.3
3,965,578	-				-1.0
3,965,579	-				-0.9
3,965,580	+				-1.1
3,965,588	+				-0.9
3,965,588	-				-0.9
3,965,732	+		SO3814	0.14	-1.1
3,965,740	-		SO3814	0.14	-2.8
3,965,754	-		SO3814	0.15	-1.0
3,965,803	+		SO3814	0.19	-1.1
3,965,848	-		SO3814	0.22	-1.1
3,966,029	+		SO3814	0.35	-0.6
3,966,029	+		SO3814	0.35	+0.0
3,966,037	-		SO3814	0.36	-1.0
3,966,137	-		SO3814	0.43	+0.1
3,966,217	+		SO3814	0.49	-1.0
3,966,420	-		SO3814	0.63	-1.6
3,966,484	+		SO3814	0.68	-0.8
3,966,506	+		SO3814	0.69	-0.8
3,966,506	+		SO3814	0.69	-0.8
3,966,514	-		SO3814	0.70	-1.3
3,966,514	-		SO3814	0.70	-1.2
3,966,514	-		SO3814	0.70	-0.6
3,966,514	-		SO3814	0.70	-1.4
3,966,514	-		SO3814	0.70	-0.6
3,966,524	-		SO3814	0.71	-1.3
3,966,538	-		SO3814	0.72	-0.5
3,966,575	+		SO3814	0.74	-1.0
3,966,576	-		SO3814	0.75	-1.1
3,966,608	+		SO3814	0.77	-0.7
3,966,728	-		SO3814	0.85	-1.5
3,966,843	+				-0.9
3,966,845	+				-0.9
3,966,904	-				-1.4
3,966,906	+				-0.5
3,966,959	+				+0.8
3,967,119	+		SO3815	0.17	+0.2
3,967,127	-		SO3815	0.19	+0.1
3,967,147	+		SO3815	0.23	+0.6
3,967,155	-		SO3815	0.25	+0.1
3,967,166	+		SO3815	0.27	-0.6
3,967,315	-		SO3815	0.58	+0.4
3,967,317	+		SO3815	0.58	+1.0
3,967,437	+		SO3815	0.83	-0.3
3,967,557	-				-0.2
3,967,592	-				+0.0
3,967,592	-				-0.5
3,967,659	+				-0.0
3,967,700	-				-0.3
3,967,720	-		SO3816	0.10	-0.2
3,967,720	-		SO3816	0.10	+0.1
3,967,928	-		SO3816	0.67	+0.2