Strain Fitness in Shewanella oneidensis MR-1 around SO3745

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
3,889,018	-				-0.4
3,889,216	+				+0.1
3,889,216	+				-0.5
3,889,248	+				+0.5
3,889,346	+		SO3744	0.18	-0.5
3,889,487	+		SO3744	0.35	+0.2
3,889,491	+		SO3744	0.36	-0.4
3,889,495	-		SO3744	0.36	+1.2
3,889,516	+		SO3744	0.39	+0.4
3,889,532	+		SO3744	0.41	+0.1
3,889,540	-		SO3744	0.42	-0.5
3,889,602	+		SO3744	0.49	+0.4
3,889,685	+		SO3744	0.59	-0.0
3,889,861	+		SO3744	0.81	-0.1
3,889,866	+		SO3744	0.81	+0.1
3,889,869	-		SO3744	0.82	-1.3
3,889,869	-		SO3744	0.82	-0.4
3,889,908	+		SO3744	0.86	-0.1
3,889,911	-		SO3744	0.87	+0.0
3,889,916	-		SO3744	0.87	-0.3
3,890,081	+				-0.6
3,890,081	+				-0.9
3,890,196	+	rfaE	SO3745	0.12	-0.1
3,890,196	+	rfaE	SO3745	0.12	-0.3
3,890,196	+	rfaE	SO3745	0.12	-1.7
3,890,196	+	rfaE	SO3745	0.12	-0.9
3,890,196	+	rfaE	SO3745	0.12	-2.5
3,890,234	+	rfaE	SO3745	0.15	-2.0
3,890,509	+	rfaE	SO3745	0.34	-0.9
3,890,517	+	rfaE	SO3745	0.35	-1.3
3,890,527	+	rfaE	SO3745	0.36	+0.3
3,890,558	-	rfaE	SO3745	0.38	-0.5
3,890,566	+	rfaE	SO3745	0.38	-0.6
3,890,608	-	rfaE	SO3745	0.41	-1.0
3,890,665	-	rfaE	SO3745	0.45	-0.4
3,890,743	-	rfaE	SO3745	0.51	+0.3
3,890,759	+	rfaE	SO3745	0.52	-1.6
3,890,759	+	rfaE	SO3745	0.52	+0.1
3,890,794	-	rfaE	SO3745	0.54	-0.5
3,890,910	+	rfaE	SO3745	0.62	+0.0
3,891,033	+	rfaE	SO3745	0.71	-0.7
3,891,041	-	rfaE	SO3745	0.71	+0.5
3,891,043	+	rfaE	SO3745	0.72	-0.3
3,891,051	-	rfaE	SO3745	0.72	-1.1
3,891,065	-	rfaE	SO3745	0.73	-1.9
3,891,082	+	rfaE	SO3745	0.74	+0.7
3,891,124	+	rfaE	SO3745	0.77	-0.5
3,891,126	-	rfaE	SO3745	0.77	-0.7
3,891,132	-	rfaE	SO3745	0.78	-0.8
3,891,186	-	rfaE	SO3745	0.82	-0.2
3,891,199	+	rfaE	SO3745	0.83	-0.6
3,891,199	+	rfaE	SO3745	0.83	-0.3
3,891,305	+	rfaE	SO3745	0.90	-0.9
3,891,305	+	rfaE	SO3745	0.90	-1.2
3,891,305	+	rfaE	SO3745	0.90	-0.5
3,891,331	-				+0.2
3,891,366	+				-0.7
3,891,442	+				-0.9
3,891,452	+				-0.7
3,891,455	+				+0.1