Strain Fitness in Shewanella oneidensis MR-1 around SO3511

Experiment: A22 0.003 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	A22 0.003 mg/ml
3,663,410	+		SO3510	0.81	-0.7
3,663,433	+		SO3510	0.83	-0.1
3,663,664	-				+0.3
3,663,676	+				-0.3
3,663,684	-				-0.7
3,663,734	+				-0.5
3,663,795	-				+0.2
3,663,843	-				-0.1
3,664,037	-				+0.2
3,664,065	+				+1.5
3,664,104	-				-0.6
3,664,169	+				+0.9
3,664,277	-				+0.6
3,664,352	-				+0.2
3,664,425	-		SO3511	0.26	+0.1
3,664,431	+		SO3511	0.29	-0.9
3,664,453	+		SO3511	0.39	+0.5
3,664,453	+		SO3511	0.39	-0.2
3,664,453	+		SO3511	0.39	-0.1
3,664,453	+		SO3511	0.39	-0.9
3,664,475	-		SO3511	0.48	-0.9
3,664,475	-		SO3511	0.48	-0.8
3,664,486	+		SO3511	0.53	-0.1
3,664,491	+		SO3511	0.56	-0.4
3,664,494	-		SO3511	0.57	+0.6
3,664,505	-		SO3511	0.62	-0.0
3,664,525	+		SO3511	0.71	-0.2
3,664,541	+		SO3511	0.78	-0.3
3,664,541	+		SO3511	0.78	+0.1
3,664,541	+		SO3511	0.78	-0.2
3,664,541	+		SO3511	0.78	+0.0
3,664,541	+		SO3511	0.78	-0.5
3,664,544	-		SO3511	0.79	-0.0
3,664,549	-		SO3511	0.81	+0.6
3,664,549	-		SO3511	0.81	-0.3
3,664,549	-		SO3511	0.81	-1.9
3,664,549	-		SO3511	0.81	-0.1
3,664,549	-		SO3511	0.81	-0.5
3,664,549	-		SO3511	0.81	-0.5
3,664,551	+		SO3511	0.82	+0.3
3,664,551	+		SO3511	0.82	-0.5
3,664,551	+		SO3511	0.82	-0.5
3,664,551	+		SO3511	0.82	-1.2
3,664,556	+		SO3511	0.84	-0.3
3,664,559	-		SO3511	0.86	-0.0
3,664,559	-		SO3511	0.86	-2.0
3,664,597	-				+1.0
3,664,629	-				-0.1
3,664,636	-				+0.4
3,664,660	-				-0.1
3,664,668	+				-1.0
3,664,670	+				-0.5
3,664,678	-				+0.0
3,664,678	-				-0.0
3,664,688	+				-0.1
3,664,706	-				+0.1
3,664,770	+				-0.1
3,664,784	+				-0.1
3,664,784	+				+0.0
3,664,784	+				-0.3
3,664,784	-				+0.4
3,664,795	+				-0.3
3,664,837	-		SO3512	0.13	+0.0
3,664,847	+		SO3512	0.14	+0.1
3,664,847	-		SO3512	0.14	-0.2
3,664,851	-		SO3512	0.15	+0.2
3,664,853	+		SO3512	0.15	+0.6
3,664,855	+		SO3512	0.15	+0.2
3,664,855	+		SO3512	0.15	-0.1
3,664,863	+		SO3512	0.16	+0.7
3,664,867	+		SO3512	0.17	-0.4
3,664,871	-		SO3512	0.18	+0.3
3,664,872	+		SO3512	0.18	-0.1
3,664,875	-		SO3512	0.18	+0.4
3,664,877	+		SO3512	0.18	+0.2
3,664,877	+		SO3512	0.18	+0.4
3,664,885	-		SO3512	0.20	-1.3
3,664,895	+		SO3512	0.21	+0.0
3,664,909	-		SO3512	0.23	-0.4
3,664,911	+		SO3512	0.23	-0.3
3,664,912	+		SO3512	0.23	-0.6
3,664,917	+		SO3512	0.24	-0.5
3,664,922	-		SO3512	0.25	+0.4
3,664,926	+		SO3512	0.26	+0.0
3,664,926	+		SO3512	0.26	+0.5
3,664,926	+		SO3512	0.26	-0.3
3,664,926	+		SO3512	0.26	-0.1
3,664,926	+		SO3512	0.26	+0.4
3,664,926	+		SO3512	0.26	-0.4
3,664,926	+		SO3512	0.26	+0.6
3,664,926	+		SO3512	0.26	-0.9
3,664,926	+		SO3512	0.26	+1.3
3,664,926	+		SO3512	0.26	+0.3
3,664,926	+		SO3512	0.26	+0.0
3,664,926	+		SO3512	0.26	+0.4
3,664,926	+		SO3512	0.26	+2.2
3,664,926	+		SO3512	0.26	+0.2
3,664,926	+		SO3512	0.26	-1.4
3,664,926	+		SO3512	0.26	+0.2
3,664,926	+		SO3512	0.26	+0.1
3,664,926	+		SO3512	0.26	-0.4
3,664,926	+		SO3512	0.26	-0.7
3,664,926	+		SO3512	0.26	-0.1
3,664,926	+		SO3512	0.26	-0.1
3,664,926	+		SO3512	0.26	-0.2
3,664,926	+		SO3512	0.26	-0.3
3,664,926	+		SO3512	0.26	+0.2
3,664,934	-		SO3512	0.27	-0.7
3,664,934	-		SO3512	0.27	-1.1
3,664,934	-		SO3512	0.27	+0.2
3,664,934	-		SO3512	0.27	-0.2
3,664,934	-		SO3512	0.27	+0.6
3,664,934	-		SO3512	0.27	+0.1
3,664,934	-		SO3512	0.27	+0.3
3,664,934	-		SO3512	0.27	-0.1
3,664,934	-		SO3512	0.27	-0.2
3,664,934	-		SO3512	0.27	+0.7
3,664,934	-		SO3512	0.27	+0.4
3,664,934	-		SO3512	0.27	+0.6
3,664,934	-		SO3512	0.27	-0.4
3,664,934	-		SO3512	0.27	+0.3
3,664,934	-		SO3512	0.27	+0.1
3,664,934	-		SO3512	0.27	-0.4
3,664,934	-		SO3512	0.27	-0.0
3,664,934	-		SO3512	0.27	+0.1
3,664,942	+		SO3512	0.28	+0.1
3,664,950	+		SO3512	0.29	-0.8
3,664,950	+		SO3512	0.29	+0.5
3,664,950	+		SO3512	0.29	-0.3
3,664,950	+		SO3512	0.29	-0.3
3,664,950	-		SO3512	0.29	-0.3
3,664,958	-		SO3512	0.30	+0.2
3,664,958	-		SO3512	0.30	-0.4
3,664,958	-		SO3512	0.30	-0.8
3,664,958	-		SO3512	0.30	-0.8
3,664,958	-		SO3512	0.30	+0.9
3,664,958	-		SO3512	0.30	-0.3
3,664,958	-		SO3512	0.30	+0.4
3,664,958	-		SO3512	0.30	-0.8
3,664,958	-		SO3512	0.30	-0.1
3,664,958	-		SO3512	0.30	-0.3
3,664,958	-		SO3512	0.30	+0.3
3,664,958	-		SO3512	0.30	-0.2
3,664,958	-		SO3512	0.30	-0.9
3,664,968	-		SO3512	0.32	+0.2
3,664,986	-		SO3512	0.34	+0.6
3,664,992	+		SO3512	0.35	+0.4
3,665,005	-		SO3512	0.37	+0.4
3,665,045	-		SO3512	0.43	-0.5
3,665,077	+		SO3512	0.47	-0.3
3,665,079	+		SO3512	0.48	-0.2
3,665,085	-		SO3512	0.49	-0.6
3,665,085	-		SO3512	0.49	-0.6
3,665,126	+		SO3512	0.54	-0.1
3,665,126	+		SO3512	0.54	+0.4
3,665,127	+		SO3512	0.55	+0.0
3,665,134	-		SO3512	0.56	-0.1
3,665,134	-		SO3512	0.56	-0.4
3,665,134	-		SO3512	0.56	-0.1
3,665,134	-		SO3512	0.56	+0.2
3,665,141	+		SO3512	0.57	+0.1
3,665,141	+		SO3512	0.57	-0.3
3,665,144	-		SO3512	0.57	-0.2
3,665,146	+		SO3512	0.57	+0.4
3,665,149	-		SO3512	0.58	+0.5
3,665,149	-		SO3512	0.58	+0.1
3,665,154	-		SO3512	0.59	+0.9
3,665,167	-		SO3512	0.60	-0.3
3,665,170	+		SO3512	0.61	-0.2
3,665,173	-		SO3512	0.61	+0.2
3,665,180	+		SO3512	0.62	-0.5
3,665,180	+		SO3512	0.62	+0.4
3,665,180	+		SO3512	0.62	-0.0
3,665,185	+		SO3512	0.63	-0.1
3,665,185	+		SO3512	0.63	+0.2
3,665,185	+		SO3512	0.63	-0.4
3,665,185	+		SO3512	0.63	-0.7
3,665,185	+		SO3512	0.63	-0.1
3,665,188	-		SO3512	0.63	-0.9
3,665,188	-		SO3512	0.63	+0.2
3,665,193	-		SO3512	0.64	-0.2
3,665,207	+		SO3512	0.66	+0.2
3,665,217	+		SO3512	0.68	-0.0
3,665,217	+		SO3512	0.68	-0.2
3,665,233	-		SO3512	0.70	+0.1
3,665,237	+		SO3512	0.71	-0.1
3,665,240	-		SO3512	0.71	-0.8
3,665,240	-		SO3512	0.71	-0.2
3,665,241	+		SO3512	0.71	-0.1
3,665,246	-		SO3512	0.72	-0.3
3,665,248	-		SO3512	0.72	+0.5
3,665,253	-		SO3512	0.73	-0.3
3,665,255	+		SO3512	0.73	-0.5
3,665,260	+		SO3512	0.74	-1.8
3,665,260	+		SO3512	0.74	-0.2
3,665,260	+		SO3512	0.74	-0.2
3,665,305	+		SO3512	0.80	-0.4
3,665,310	+		SO3512	0.81	-0.6
3,665,315	+		SO3512	0.82	+0.0
3,665,315	+		SO3512	0.82	+0.3
3,665,317	+		SO3512	0.82	-0.0
3,665,317	+		SO3512	0.82	+0.3
3,665,323	+		SO3512	0.83	-0.5
3,665,323	+		SO3512	0.83	-0.1
3,665,323	+		SO3512	0.83	+0.5
3,665,323	+		SO3512	0.83	+0.3
3,665,323	+		SO3512	0.83	-0.1
3,665,323	+		SO3512	0.83	-0.1
3,665,323	+		SO3512	0.83	-0.1
3,665,323	+		SO3512	0.83	+0.1
3,665,323	-		SO3512	0.83	+0.6
3,665,323	-		SO3512	0.83	-0.3
3,665,323	-		SO3512	0.83	+0.2
3,665,325	-		SO3512	0.83	+1.5
3,665,328	-		SO3512	0.84	-0.2
3,665,331	+		SO3512	0.84	-0.3
3,665,331	-		SO3512	0.84	+0.2
3,665,331	-		SO3512	0.84	-0.5
3,665,331	-		SO3512	0.84	-0.4
3,665,332	+		SO3512	0.84	-0.8
3,665,337	-		SO3512	0.85	+0.0
3,665,339	+		SO3512	0.85	-0.4
3,665,342	+		SO3512	0.86	-0.6
3,665,344	+		SO3512	0.86	+0.1
3,665,344	+		SO3512	0.86	-0.4
3,665,344	+		SO3512	0.86	+0.8
3,665,344	+		SO3512	0.86	+0.1
3,665,344	+		SO3512	0.86	+0.2
3,665,344	+		SO3512	0.86	-1.4
3,665,344	+		SO3512	0.86	-0.6
3,665,344	+		SO3512	0.86	-0.5
3,665,345	-		SO3512	0.86	-0.1
3,665,345	-		SO3512	0.86	-1.1
3,665,352	-		SO3512	0.87	+0.2
3,665,352	-		SO3512	0.87	-0.1
3,665,352	-		SO3512	0.87	+2.5
3,665,352	-		SO3512	0.87	-0.2
3,665,352	-		SO3512	0.87	-0.5
3,665,352	-		SO3512	0.87	+0.2
3,665,352	-		SO3512	0.87	-0.4
3,665,352	-		SO3512	0.87	+0.2
3,665,352	-		SO3512	0.87	-0.8
3,665,352	-		SO3512	0.87	+0.0
3,665,352	-		SO3512	0.87	-0.7
3,665,352	-		SO3512	0.87	+0.8
3,665,352	-		SO3512	0.87	-0.4
3,665,355	-		SO3512	0.88	+0.5
3,665,364	+		SO3512	0.89	+0.3
3,665,374	+				+0.1
3,665,413	+				+1.0
3,665,459	+				+0.0
3,665,459	+				-0.4
3,665,459	+				+0.4
3,665,459	+				+0.6
3,665,466	+				-0.3
3,665,467	-				+0.2
3,665,467	-				+0.5
3,665,467	-				-0.1
3,665,491	-				+0.2
3,665,497	+				+0.4
3,665,523	+				+0.2
3,665,525	+				+0.3
3,665,529	+				-0.7
3,665,530	+				+1.6
3,665,531	-				-0.0
3,665,536	+				-0.6
3,665,537	-				+0.3
3,665,537	-				-0.6
3,665,538	-				+0.3
3,665,544	+				-0.8
3,665,544	+				-0.6
3,665,544	+				+0.9
3,665,552	-				-0.2
3,665,552	-				+0.3
3,665,552	-				-0.3
3,665,553	+				+0.9
3,665,553	+				-0.6
3,665,553	-				-0.3
3,665,561	-				-0.4
3,665,566	-				-0.3
3,665,568	-				+0.4
3,665,574	+				+0.2